Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Reverse (-)

61390928 .. 61391704

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0497900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCAGGGCCTACGTCGTTGCTCCAACGACGTCGTCCACCTCGGCCTCTCCACCTCCCCTCCTACCCCAAACCCTTCCTCCCTCTCCATCGACGTCGCCGAGTCCGCCGAGACCCGCATCCGCCGCCTCATCTCCGAGCACCCCGTCATCATCTTCAGCCGAACTTCCTGCTGCATGTGCCACGTCATGAAGAAGCTCCTCGCTACTATTGGGGTCCACCCTACCGTCATCGAGTTGGACGACGACGAAATCGCCGCTCTCCCTTGTCCCCCTCCCTCCTCCTTCTCCGCCGTCGACGACGACAAGCCCCGGAATAACATCCCGCCCTCCGTCTTCATCGGCGGCACCTGCGTCGGCGGCCTCGAATCCCTGGTGGCCCTCCACCTCACTGGCCACCTCGTCCCCAAGCTCGTCGAAGTTGGTGCCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.2

Weight (kDa)

5.8

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	49 - 84	9.8e-07	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
AatII	GACGTC	2 cut(s)	33, 96
Acc36I	ACCTGC	1 cut(s)	356
AccB1I	GGYRCC	2 cut(s)	344, 422
AccBSI	CCGCTC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	9 cut(s)	105, 115, 121, 124, 255, 288, 323, 342, 357
AcoI	YGGCCR	1 cut(s)	391
AcuI	CTGAAG	1 cut(s)	139
AcyI	GRCGYC	2 cut(s)	30, 93
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	2 cut(s)	196, 409
AluI	AGCT	2 cut(s)	196, 409
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	104
AoxI	GGCC	5 cut(s)	7, 43, 358, 375, 391
ApeKI	GCWGC	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	7, 214, 376
AsuC2I	CCSGG	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	214
BaeGI	GKGCMC	1 cut(s)	427
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	2 cut(s)	344, 422
BbsI	GAAGAC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	5 cut(s)	150, 184, 334, 368, 404
BciT130I	CCWGG	1 cut(s)	371
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	5 cut(s)	124, 172, 255, 343, 358
BlsI	GCNGC	5 cut(s)	125, 173, 256, 344, 359
Bme1390I	CCNGG	2 cut(s)	310, 371
Bme18I	GGWCC	1 cut(s)	214
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	7, 214, 376
BmiI	GGNNCC	3 cut(s)	215, 346, 424
BmrFI	CCNGG	2 cut(s)	310, 371
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	325
BpuMI	CCSGG	1 cut(s)	310
BsaHI	GRCGYC	2 cut(s)	30, 93
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	40, 308, 369
BsaXI	ACNNNNNCTCC	4 cut(s)	43, 62, 73, 92
Bse1I	ACTGG	1 cut(s)	394
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	40, 308, 369
BseGI	GGATG	2 cut(s)	117, 318
BseNI	ACTGG	1 cut(s)	394
BseRI	GAGGAG	2 cut(s)	188, 268
BseSI	GKGCMC	1 cut(s)	427
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	5 cut(s)	9, 45, 360, 377, 393
BshNI	GGYRCC	2 cut(s)	344, 422
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	310
BslFI	GGGAC	2 cut(s)	252, 386
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	252, 386
BsnI	GGCC	5 cut(s)	9, 45, 360, 377, 393
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	141, 427
BspACI	CCGC	9 cut(s)	105, 115, 121, 124, 255, 288, 323, 342, 357
BspANI	GGCC	5 cut(s)	9, 45, 360, 377, 393
BspHI	TCATGA	1 cut(s)	186
BspLI	GGNNCC	3 cut(s)	215, 346, 424
BspMI	ACCTGC	1 cut(s)	356
BspT107I	GGYRCC	2 cut(s)	344, 422
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	394
BssECI	CCNNGG	3 cut(s)	40, 308, 369
BssNI	GRCGYC	2 cut(s)	30, 93
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	226
BstACI	GRCGYC	2 cut(s)	30, 93
BstF5I	GGATG	2 cut(s)	117, 318
BstMAI	GTCTC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 123, 177, 348, 357
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	2 cut(s)	308, 369
BstSLI	GKGCMC	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	389
BsuRI	GGCC	5 cut(s)	9, 45, 360, 377, 393
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	117, 318
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	356
CciI	TCATGA	1 cut(s)	186
Cfr13I	GGNCC	3 cut(s)	7, 214, 376
CseI	GACGC	1 cut(s)	340
CviAII	CATG	2 cut(s)	175, 187
CviJI	RGCY	9 cut(s)	9, 45, 159, 196, 307, 360, 377, 393, 409
CviKI_1	RGCY	9 cut(s)	9, 45, 159, 196, 307, 360, 377, 393, 409
EaeI	YGGCCR	1 cut(s)	391
EciI	GGCGGA	3 cut(s)	94, 110, 277
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	369
FaeI	CATG	2 cut(s)	178, 190
FaiI	YATR	2 cut(s)	176, 188
FaqI	GGGAC	2 cut(s)	252, 386
FatI	CATG	2 cut(s)	174, 186
FauI	CCCGC	2 cut(s)	122, 330
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	5 cut(s)	124, 172, 255, 343, 358
FokI	GGATG	2 cut(s)	104, 305
Fsp4HI	GCNGC	5 cut(s)	124, 172, 255, 343, 358
FspBI	CTAG	1 cut(s)	430
GluI	GCNGC	5 cut(s)	124, 172, 255, 343, 358
HaeIII	GGCC	5 cut(s)	9, 45, 360, 377, 393
HapII	CCGG	1 cut(s)	310
HgaI	GACGC	1 cut(s)	340
Hin1I	GRCGYC	2 cut(s)	30, 93
Hin1II	CATG	2 cut(s)	178, 190
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	101, 365
HpaII	CCGG	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	37, 217, 295
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	3 cut(s)	37, 217, 295
HpyAV	CCTTC	2 cut(s)	84, 292
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	4 cut(s)	13, 30, 93, 183
HpyCH4V	TGCA	2 cut(s)	4, 174
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 123, 177, 348, 357
HpySE526I	ACGT	4 cut(s)	13, 30, 93, 183
Hsp92I	GRCGYC	2 cut(s)	30, 93
Hsp92II	CATG	2 cut(s)	178, 190
LmnI	GCTCC	2 cut(s)	26, 201
LpnPI	CCDG	6 cut(s)	181, 323, 356, 361, 375, 383
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	430
MaeII	ACGT	4 cut(s)	13, 30, 93, 183
MbiI	CCGCTC	1 cut(s)	257
MboII	GAAGA	3 cut(s)	145, 202, 325
MhlI	GDGCHC	2 cut(s)	141, 427
MlsI	TGGCCA	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	48, 216
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	310, 371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	5 cut(s)	104, 123, 177, 348, 357
NciI	CCSGG	1 cut(s)	310
NlaIII	CATG	2 cut(s)	178, 190
NlaIV	GGNNCC	3 cut(s)	215, 346, 424
NmeAIII	GCCGAG	3 cut(s)	21, 124, 133
NspI	RCATGY	1 cut(s)	178
PagI	TCATGA	1 cut(s)	186
PaqCI	CACCTGC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 237, 360
PfeI	GAWTC	1 cut(s)	365
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	125, 173, 256, 344, 359
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	215, 346, 424
PspPI	GGNCC	3 cut(s)	7, 214, 376
PsyI	GACNNNGTC	1 cut(s)	32
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	5 cut(s)	124, 172, 255, 343, 358
Sau96I	GGNCC	3 cut(s)	7, 214, 376
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	310, 371
SduI	GDGCHC	2 cut(s)	141, 427
SfaNI	GCATC	1 cut(s)	126
SgrDI	CGTCGACG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	214
SsiI	CCGC	9 cut(s)	105, 115, 121, 124, 255, 288, 323, 342, 357
SspMI	CTAG	1 cut(s)	430
StyD4I	CCNGG	2 cut(s)	308, 369
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	4 cut(s)	16, 33, 96, 186
TaqI	TCGA	5 cut(s)	90, 231, 294, 363, 414
TauI	GCSGC	4 cut(s)	126, 257, 345, 360
TfiI	GAWTC	1 cut(s)	365
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	203, 325
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	214
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	430
ZraI	GACGTC	2 cut(s)	31, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.