Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009870

Physical Location & Seq

Genomic Coordinates Reverse (-)

13472269 .. 13476146

Gene Structure 3878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G146900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATGATGACTCGGCGAGTCGGTGTGGTCGTTACGTCGTCTTTACTCGTCTTCTTCGCAGTAGTGGCTGCAGTGCTGCTGTTCGCGCCTGCGTTTGACCATGCTGTATTCATGAGCATCCGCCATGGTTCCATGGGTTCAAGCTCGTCTGGTGCAGGAAACAACACTCTCACTGCAACCCACCGCAAGCTTCTTCTTCGTGCGACAGAAATGGACGAACCAAACAGAATTCCAGGAGAAAAGTGTAGCAAGGCAGACATAGTGATAAACCAGGGTCCCACGGGCCCACTGCCAAGTGGTATTCCCACCTACACCGTTGAGATCATGAACGTGTGTGCCAGCGGCTGTGATATCTCTCGCATCCACCTCACCTGTGGTTGGTTCAGCTCGGCTCGGCTTGTGAACCCTAGGATCTTCAAGCGCCTTCACTACAACGACTGCCTTGTGAACGATGGCAAGCCTCTGGTCAATGGCGGTACACTGTCCTTTCAATACGCCAATACTTTTCTCTACCACCTCTCAGTTTCCTCCGTTTCATGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0001709 GO:0003006 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009653 GO:0009791 GO:0009908 GO:0009987 GO:0010234 GO:0019953 GO:0022402 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0034293 GO:0043934 GO:0044703 GO:0045165 GO:0048229 GO:0048236 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:0061458 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1903046 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.53

Weight (kDa)

9.04

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24972
fragaria_vesca	FvH4_5g08940 FvH4_5g08940
malus_domestica	MD06G1137000.v1.1 MD14G1151800.v1.1
prunus_persica	Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1 Prupe.5G146900_v2.0.a1
pyrus_communis	pycom06g12830
rosa_chinensis	RchiOBHm_Chr7g0189441
rosa_laevigata	RLG00000004611
rosa_roxburghii	Rroxscaffold_3G00265440
rosa_rugosa	Rorug06G0497800 Rorug06G0497900 Rorug06G0498000 Rorug06G0498000
rosa_samantha	Rh7AG102700 Rh7DG104800
rosa_wichuraiana	Rw7G008880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	86
AciI	CCGC	4 cut(s)	121, 184, 342, 474
AclWI	GGATC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	1 cut(s)	478
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	3 cut(s)	141, 418, 491
AjnI	CCWGG	2 cut(s)	232, 270
AluBI	AGCT	3 cut(s)	144, 190, 387
AluI	AGCT	3 cut(s)	144, 190, 387
AlwI	GGATC	1 cut(s)	419
AlwNI	CAGNNNCTG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	283
ApaI	GGGCCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	68, 76
ApoI	RAATTY	1 cut(s)	228
AspA2I	CCTAGG	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	88, 423
AspS9I	GGNCC	3 cut(s)	275, 283, 284
AsuHPI	GGTGA	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	275
AvrII	CCTAGG	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	55, 63
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	2 cut(s)	234, 272
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	424
BisI	GCNGC	3 cut(s)	69, 77, 343
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	3 cut(s)	70, 78, 344
Bme1390I	CCNGG	2 cut(s)	234, 272
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	275, 283, 284
BmiI	GGNNCC	4 cut(s)	130, 276, 277, 285
BmrFI	CCNGG	2 cut(s)	234, 272
BmsI	GCATC	2 cut(s)	126, 369
BpiI	GAAGAC	1 cut(s)	43
BsaJI	CCNNGG	5 cut(s)	124, 132, 271, 279, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	234, 272
BseDI	CCNNGG	5 cut(s)	124, 132, 271, 279, 407
BseGI	GGATG	2 cut(s)	117, 360
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	534
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	55, 63
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	285
Bsp120I	GGGCCC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	321, 411
Bsp19I	CCATGG	2 cut(s)	124, 132
BspACI	CCGC	4 cut(s)	121, 184, 342, 474
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	533
BspFNI	CGCG	1 cut(s)	86
BspHI	TCATGA	2 cut(s)	111, 324
BspLI	GGNNCC	4 cut(s)	130, 276, 277, 285
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	1 cut(s)	419
BssECI	CCNNGG	5 cut(s)	124, 132, 271, 279, 407
BssMI	GATC	2 cut(s)	321, 411
BssT1I	CCWWGG	3 cut(s)	124, 132, 407
Bst2UI	CCWGG	2 cut(s)	234, 272
Bst4CI	ACNGT	2 cut(s)	316, 483
BstC8I	GCNNGC	4 cut(s)	90, 188, 340, 458
BstDEI	CTNAG	1 cut(s)	520
BstDSI	CCRYGG	3 cut(s)	124, 132, 279
BstF5I	GGATG	2 cut(s)	117, 360
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	424
BstHHI	GCGC	2 cut(s)	88, 423
BstKTI	GATC	2 cut(s)	324, 414
BstMBI	GATC	2 cut(s)	321, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 85
BstNI	CCWGG	2 cut(s)	234, 272
BstSCI	CCNGG	2 cut(s)	232, 270
BstSFI	CTRYAG	1 cut(s)	69
BstSLI	GKGCMC	1 cut(s)	287
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	2 cut(s)	55, 63
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	3 cut(s)	124, 132, 279
BtsCI	GGATG	2 cut(s)	117, 360
BtsI	GCAGTG	3 cut(s)	78, 171, 287
BtsIMutI	CAGTG	4 cut(s)	78, 171, 287, 479
Cac8I	GCNNGC	4 cut(s)	90, 188, 340, 458
CaiI	CAGNNNCTG	1 cut(s)	345
CciI	TCATGA	2 cut(s)	111, 324
CfoI	GCGC	2 cut(s)	88, 423
Cfr13I	GGNCC	3 cut(s)	275, 283, 284
Csp6I	GTAC	1 cut(s)	477
CviAII	CATG	6 cut(s)	101, 112, 125, 133, 325, 537
CviJI	RGCY	9 cut(s)	68, 144, 190, 285, 345, 387, 392, 397, 460
CviKI_1	RGCY	9 cut(s)	68, 144, 190, 285, 345, 387, 392, 397, 460
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	2 cut(s)	323, 413
DpnII	GATC	2 cut(s)	321, 411
EciI	GGCGGA	1 cut(s)	110
Eco130I	CCWWGG	3 cut(s)	124, 132, 407
Eco24I	GRGCYC	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	232, 270
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	3 cut(s)	124, 132, 407
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	3 cut(s)	124, 132, 407
FaeI	CATG	6 cut(s)	104, 115, 128, 136, 328, 540
FaiI	YATR	7 cut(s)	102, 113, 126, 134, 260, 326, 538
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	6 cut(s)	100, 111, 124, 132, 324, 536
Fnu4HI	GCNGC	3 cut(s)	69, 77, 343
FokI	GGATG	2 cut(s)	104, 347
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	69, 77, 343
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	2 cut(s)	87, 422
GluI	GCNGC	3 cut(s)	69, 77, 343
HaeII	RGCGCY	1 cut(s)	424
HaeIII	GGCC	1 cut(s)	285
HhaI	GCGC	2 cut(s)	88, 423
Hin1II	CATG	6 cut(s)	104, 115, 128, 136, 328, 540
Hin6I	GCGC	2 cut(s)	86, 421
HinP1I	GCGC	2 cut(s)	86, 421
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	2 cut(s)	10, 18
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	3 cut(s)	403, 448, 479
Hpy188III	TCNNGA	2 cut(s)	112, 325
Hpy8I	GTNNAC	3 cut(s)	403, 448, 479
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	434
HpyCH4III	ACNGT	2 cut(s)	316, 483
HpyCH4IV	ACGT	2 cut(s)	35, 330
HpyCH4V	TGCA	3 cut(s)	71, 155, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 85
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	2 cut(s)	35, 330
Hsp92II	CATG	6 cut(s)	104, 115, 128, 136, 328, 540
HspAI	GCGC	2 cut(s)	86, 421
KflI	GGGWCCC	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	321, 411
Lsp1109I	GCAGC	2 cut(s)	55, 63
LweI	GCATC	2 cut(s)	126, 369
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	2 cut(s)	35, 330
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	323, 413
MboI	GATC	2 cut(s)	321, 411
MboII	GAAGA	5 cut(s)	43, 46, 185, 188, 406
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	4, 27
MnlI	CCTC	4 cut(s)	377, 471, 527, 538
MseI	TTAA	1 cut(s)	544
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	234, 272
MvaI	CCWGG	2 cut(s)	234, 272
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	65, 85
NcoI	CCATGG	2 cut(s)	124, 132
NdeII	GATC	2 cut(s)	321, 411
NlaIII	CATG	6 cut(s)	104, 115, 128, 136, 328, 540
NlaIV	GGNNCC	4 cut(s)	130, 276, 277, 285
NmeAIII	GCCGAG	2 cut(s)	368, 373
PagI	TCATGA	2 cut(s)	111, 324
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	70, 78, 344
PleI	GAGTC	2 cut(s)	4, 26
PpsI	GAGTC	2 cut(s)	4, 26
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	232, 270
PspGI	CCWGG	2 cut(s)	232, 270
PspN4I	GGNNCC	4 cut(s)	130, 276, 277, 285
PspOMI	GGGCCC	1 cut(s)	283
PspPI	GGNCC	3 cut(s)	275, 283, 284
PspPPI	RGGWCCY	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	345
PsuI	RGATCY	1 cut(s)	411
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	544
SatI	GCNGC	3 cut(s)	69, 77, 343
Sau3AI	GATC	2 cut(s)	321, 411
Sau96I	GGNCC	3 cut(s)	275, 283, 284
SchI	GAGTC	2 cut(s)	4, 27
ScrFI	CCNGG	2 cut(s)	234, 272
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	9 cut(s)	38, 146, 192, 311, 333, 369, 374, 389, 519
SfaNI	GCATC	2 cut(s)	126, 369
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	4 cut(s)	121, 184, 342, 474
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	232, 270
StyI	CCWWGG	3 cut(s)	124, 132, 407
TaaI	ACNGT	2 cut(s)	316, 483
TaiI	ACGT	2 cut(s)	38, 333
TasI	AATT	1 cut(s)	228
TauI	GCSGC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	544
Tru9I	TTAA	1 cut(s)	544
TscAI	CASTG	4 cut(s)	78, 178, 294, 486
TseI	GCWGC	2 cut(s)	68, 76
TspDTI	ATGAA	3 cut(s)	100, 341, 525
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	4 cut(s)	78, 178, 294, 486
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmaJI	CCTAGG	1 cut(s)	407
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.