Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010798

Physical Location & Seq

Genomic Coordinates Reverse (-)

12898514 .. 12900090

Gene Structure 1577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCAGGTCCTCGTCGTCTCTCCTCCGCTCATCGCCGCCGCATCTCTCTCTAAACCTCTCAATTCTCTCTCTAAAGCCGCACTCTCTTTCTCCAGAGCCAAACCCATTTGTCCTTTCCCTCAAACCTCTCGACGACCAATCTCCGTATACAAATCCCCAATGAACAACCTTTTCAACAGACTCGGATTCGGGTCTCGTCCTCAAGCCCAAGCTGACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGATGATGTTCCGTCTTCAGGTCAGCAATTCGCGCAATTTGGCGCCGGTTGTTTCTGGGGAGTGGAGCTAGCTTACCAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCATCGTGCACAATCCGAGTTACGAGGATGTCTGTACTGGCACTACGGGACATAACGAGGTTGTTAGAGTTCAGTATGATCCCAAAGAGTGTAGCTTTGAGAGCTTGCTTGATGTTTTCTGGAATCGTCATGATCCAACCACCTTGAATCGTCAGGGTGGGGATGTGGGAACGCAGTATCGATCAGGTATATACTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCTGTTGAGAAACAGCAGAAGATATTGAACAAGAGGATTGTCACAGAGATACTTCCCGCTACGAAATTCTACAGAGCAGAAAATTACCACCAGCAATACCTGGCAAAAGGGGGTCGCATGGGTTTAAGACAATCAGCTGAGAAAGGTTGCAAGGATCCAATCCGATGCTATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

258

Amino Acids

28.64

Weight (kDa)

8.96

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	94 - 236	2.1e-60	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25130
fragaria_vesca	FvH4_5g06741 FvH4_5g06742
malus_domestica	MD01G1182900.v1.1 MD04G1132300.v1.1 MD06G1160700.v1.1 MD06G1160900.v1.1 MD14G1166700.v1.1
prunus_persica	Prupe.5G161000_v2.0.a1
pyrus_communis	pycom06g14370 pycom14g13930
rosa_chinensis	RchiOBHm_Chr7g0191801
rosa_laevigata	RLG00000004422
rosa_roxburghii	Rroxscaffold_3G00263510
rosa_rugosa	Rorug06G0511500
rosa_samantha	Rh7AG121600 Rh7BG123000 Rh7CG125900 Rh7DG124700
rosa_wichuraiana	Rw7G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	281
AciI	CCGC	7 cut(s)	26, 36, 39, 78, 225, 228, 657
AclWI	GGATC	4 cut(s)	443, 497, 749, 762
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	2 cut(s)	266, 357
AgsI	TTSAA	3 cut(s)	175, 517, 628
AjnI	CCWGG	2 cut(s)	334, 699
AluBI	AGCT	8 cut(s)	212, 316, 320, 465, 474, 593, 602, 737
AluI	AGCT	8 cut(s)	212, 316, 320, 465, 474, 593, 602, 737
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	2 cut(s)	22, 198
Alw44I	GTGCAC	1 cut(s)	377
AlwI	GGATC	4 cut(s)	443, 497, 749, 762
ApaLI	GTGCAC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	665
AspLEI	GCGC	3 cut(s)	283, 293, 588
AspS9I	GGNCC	2 cut(s)	7, 242
AsuNHI	GCTAGC	1 cut(s)	316
AvaII	GGWCC	2 cut(s)	7, 242
BaeGI	GKGCMC	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	754
BanI	GGYRCC	1 cut(s)	290
BauI	CACGAG	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	381
BccI	CCATC	1 cut(s)	226
BciT130I	CCWGG	2 cut(s)	336, 701
BcoDI	GTCTC	2 cut(s)	22, 198
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	670
BfoI	RGCGCY	1 cut(s)	294
BisI	GCNGC	4 cut(s)	36, 39, 78, 228
BlsI	GCNGC	4 cut(s)	37, 40, 79, 229
Bme1390I	CCNGG	2 cut(s)	336, 701
Bme18I	GGWCC	2 cut(s)	7, 242
BmgT120I	GGNCC	2 cut(s)	7, 242
BmiI	GGNNCC	3 cut(s)	244, 292, 756
BmrFI	CCNGG	2 cut(s)	336, 701
BmsI	GCATC	3 cut(s)	50, 381, 755
BmtI	GCTAGC	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	550
BsaHI	GRCGYC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	3 cut(s)	238, 351, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 357
Bse118I	RCCGGY	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	336, 701
BseCI	ATCGAT	1 cut(s)	550
BseDI	CCNNGG	3 cut(s)	238, 351, 367
BseGI	GGATG	2 cut(s)	403, 538
BseLI	CCNNNNNNNGG	2 cut(s)	266, 357
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	290
BshVI	ATCGAT	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	266, 357
BsmAI	GTCTC	2 cut(s)	22, 198
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	432
Bso31I	GGTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	448, 502, 551, 754
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	7 cut(s)	26, 36, 39, 78, 225, 228, 657
BspCNI	CTCAG	1 cut(s)	730
BspDI	ATCGAT	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	3 cut(s)	244, 292, 756
BspOI	GCTAGC	1 cut(s)	320
BspPI	GGATC	4 cut(s)	443, 497, 749, 762
BspT107I	GGYRCC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	198
BsrBI	CCGCTC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	3 cut(s)	238, 351, 367
BssMI	GATC	4 cut(s)	448, 502, 551, 754
BssNAI	GTATAC	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	594
BssT1I	CCWWGG	2 cut(s)	238, 367
Bst1107I	GTATAC	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	2 cut(s)	336, 701
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	318, 476
BstDEI	CTNAG	1 cut(s)	738
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	2 cut(s)	403, 538
BstFNI	CGCG	1 cut(s)	281
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	3 cut(s)	283, 293, 588
BstKTI	GATC	4 cut(s)	451, 505, 554, 757
BstMAI	GTCTC	2 cut(s)	22, 198
BstMBI	GATC	4 cut(s)	448, 502, 551, 754
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 280, 471, 599
BstNI	CCWGG	2 cut(s)	336, 701
BstSCI	CCNGG	2 cut(s)	334, 699
BstSFI	CTRYAG	1 cut(s)	670
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BstZ17I	GTATAC	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	550
BsuTUI	ATCGAT	1 cut(s)	550
BtgI	CCRYGG	1 cut(s)	367
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	403, 538
Cac8I	GCNNGC	2 cut(s)	318, 476
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	3 cut(s)	283, 293, 588
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	2 cut(s)	7, 242
ClaI	ATCGAT	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	3 cut(s)	368, 500, 718
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	1 cut(s)	738
DinI	GGCGCC	1 cut(s)	292
DpnI	GATC	4 cut(s)	450, 504, 553, 756
DpnII	GATC	4 cut(s)	448, 502, 551, 754
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	238, 367
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	7, 242
Eco57I	CTGAAG	1 cut(s)	249
EcoO109I	RGGNCCY	2 cut(s)	7, 242
EcoRII	CCWGG	2 cut(s)	334, 699
EcoT14I	CCWWGG	2 cut(s)	238, 367
EgeI	GGCGCC	1 cut(s)	292
EheI	GGCGCC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	238, 367
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	3 cut(s)	371, 503, 721
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	3 cut(s)	367, 499, 717
FauI	CCCGC	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	36, 39, 78, 228
FokI	GGATG	2 cut(s)	410, 545
Fsp4HI	GCNGC	4 cut(s)	36, 39, 78, 228
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	3 cut(s)	282, 292, 587
GluI	GCNGC	4 cut(s)	36, 39, 78, 228
GsuI	CTGGAG	1 cut(s)	76
HaeII	RGCGCY	1 cut(s)	294
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	3 cut(s)	283, 293, 588
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	371, 503, 721
Hin6I	GCGC	3 cut(s)	281, 291, 586
HinP1I	GCGC	3 cut(s)	281, 291, 586
HinfI	GANTC	4 cut(s)	180, 186, 493, 517
HpaII	CCGG	1 cut(s)	294
Hpy166II	GTNNAC	2 cut(s)	148, 379
Hpy188I	TCNGA	3 cut(s)	185, 387, 764
Hpy188III	TCNNGA	5 cut(s)	93, 129, 490, 500, 596
Hpy8I	GTNNAC	2 cut(s)	148, 379
Hpy99I	CGWCG	3 cut(s)	17, 135, 251
HpyCH4V	TGCA	3 cut(s)	4, 379, 750
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 280, 471, 599
HpyF3I	CTNAG	1 cut(s)	738
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	371, 503, 721
HspAI	GCGC	3 cut(s)	281, 291, 586
KasI	GGCGCC	1 cut(s)	290
Kzo9I	GATC	4 cut(s)	448, 502, 551, 754
LmnI	GCTCC	1 cut(s)	313
LweI	GCATC	3 cut(s)	50, 381, 755
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	3 cut(s)	340, 389, 640
MalI	GATC	4 cut(s)	450, 504, 553, 756
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	4 cut(s)	448, 502, 551, 754
MboII	GAAGA	3 cut(s)	213, 255, 631
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	5 cut(s)	61, 275, 284, 665, 682
Mly113I	GGCGCC	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	1 cut(s)	530
MseI	TTAA	1 cut(s)	725
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	2 cut(s)	336, 701
MvaI	CCWGG	2 cut(s)	336, 701
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	4 cut(s)	233, 280, 471, 599
NarI	GGCGCC	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	4 cut(s)	448, 502, 551, 754
NheI	GCTAGC	1 cut(s)	316
NlaIII	CATG	3 cut(s)	371, 503, 721
NlaIV	GGNNCC	3 cut(s)	244, 292, 756
NmuCI	GTSAC	2 cut(s)	340, 640
PagI	TCATGA	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	186, 493, 517
PkrI	GCNGC	4 cut(s)	37, 40, 79, 229
PleI	GAGTC	1 cut(s)	174
PluTI	GGCGCC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	174
PpuMI	RGGWCCY	2 cut(s)	7, 242
Psp5II	RGGWCCY	2 cut(s)	7, 242
Psp6I	CCWGG	2 cut(s)	334, 699
PspGI	CCWGG	2 cut(s)	334, 699
PspN4I	GGNNCC	3 cut(s)	244, 292, 756
PspPI	GGNCC	2 cut(s)	7, 242
PspPPI	RGGWCCY	2 cut(s)	7, 242
PsuI	RGATCY	1 cut(s)	754
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	725
SatI	GCNGC	4 cut(s)	36, 39, 78, 228
Sau3AI	GATC	4 cut(s)	448, 502, 551, 754
Sau96I	GGNCC	2 cut(s)	7, 242
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	336, 701
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	3 cut(s)	50, 381, 755
SfcI	CTRYAG	1 cut(s)	670
SfoI	GGCGCC	1 cut(s)	292
SinI	GGWCC	2 cut(s)	7, 242
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	5 cut(s)	61, 275, 284, 665, 682
SsiI	CCGC	7 cut(s)	26, 36, 39, 78, 225, 228, 657
SspDI	GGCGCC	1 cut(s)	290
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	334, 699
StyI	CCWWGG	2 cut(s)	238, 367
TaqI	TCGA	2 cut(s)	130, 550
TaqII	GACCGA	1 cut(s)	365
TasI	AATT	5 cut(s)	61, 275, 284, 665, 682
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	4 cut(s)	38, 41, 80, 230
TfiI	GAWTC	3 cut(s)	186, 493, 517
Tru1I	TTAA	1 cut(s)	725
Tru9I	TTAA	1 cut(s)	725
TseFI	GTSAC	2 cut(s)	340, 640
Tsp45I	GTSAC	2 cut(s)	340, 640
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	2 cut(s)	133, 249
VneI	GTGCAC	1 cut(s)	377
VpaK11BI	GGWCC	2 cut(s)	7, 242
XapI	RAATTY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.