MD06G1160900.v1.1

Peptide methionine sulfoxide reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010798
Physical Location & Seq
Forward (+)
30207352 .. 30209249
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1160900.v1.1.491

Sequence Viewer

Length: 588 bp
ATGGCCGCCGCTTCCGATAATTCCGCTGTCAACAACCCGGCTCTGGGCCCGGACTCGGATACTCCGGACAATCCGGGTCACGAATTCGCTCAGTTCGGATCCGGGTGCTTCTGGGGAGCGGAGCTGAGGTTCCAGCGAGTTGTAGGGGTGGTGAAGACCGAGGTCGGGTACTCCCAGGGCCATGCGGACGATCCCAATTACAAATTGGTGTGCACCGGAACCACGAACCATGCGGAGGTGGTTCGGGTCCAGTTTGACCCGGAAGTCTGCCCCTACAAGGATCTGCTCACTGTGTTTTGGGATCGCCATGATCCAACGACGCTCAATCGCCAGGGAGGAGATGTTGGCACACAATACCGATCCGGAATCTACTACTACAACGAAAACCAGGCTCGGCTGGCCGAGGAATCGAAGGAAGCTAAGCAGGCGGAGTTGAAGGATAAGAAGGTGGTGACGGAGATCCTCCCGGCAAAGAAATTTTACAGGGCGGAGGAATACCATCAGCAATATCTCGAAAAAGGAGGAGGTAAAGGCAACAAACAATCTGCCGAGAAGGGTTGCACTGATCCTATCAGATGCTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

196

Amino Acids

21.69

Weight (kDa)

5.57

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 30 - 174 4.7e-60 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccBSI CCGCTC 1 cut(s) 119
AccIII TCCGGA 2 cut(s) 64, 362
AciI CCGC 8 cut(s) 6, 9, 24, 119, 185, 233, 428, 488
AclWI GGATC 9 cut(s) 93, 106, 185, 288, 305, 309, 354, 454, 560
AcoI YGGCCR 2 cut(s) 3, 399
AcsI RAATTY 2 cut(s) 83, 476
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 6 cut(s) 43, 44, 55, 165, 235, 277
AgsI TTSAA 1 cut(s) 436
AjnI CCWGG 3 cut(s) 174, 330, 387
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 2 cut(s) 124, 419
AluI AGCT 2 cut(s) 124, 419
Alw21I GWGCWC 1 cut(s) 215
Alw44I GTGCAC 1 cut(s) 211
AlwI GGATC 9 cut(s) 93, 106, 185, 288, 305, 309, 354, 454, 560
Aor13HI TCCGGA 2 cut(s) 64, 362
AoxI GGCC 4 cut(s) 3, 46, 178, 399
ApaI GGGCCC 1 cut(s) 50
ApaLI GTGCAC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 83, 476
AspS9I GGNCC 4 cut(s) 46, 47, 178, 247
AsuC2I CCSGG 6 cut(s) 38, 50, 75, 103, 260, 467
AsuHPI GGTGA 2 cut(s) 163, 463
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 2 cut(s) 50, 215
BamHI GGATCC 1 cut(s) 98
BanII GRGCYC 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 215
BbvCI CCTCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 507
BciT130I CCWGG 3 cut(s) 176, 332, 389
BciVI GTATCC 1 cut(s) 52
BcnI CCSGG 6 cut(s) 38, 50, 75, 103, 260, 467
BfuI GTATCC 1 cut(s) 52
BisI GCNGC 2 cut(s) 6, 9
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 9 cut(s) 38, 50, 75, 103, 176, 260, 332, 389, 467
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 4 cut(s) 46, 47, 178, 247
BmiI GGNNCC 5 cut(s) 48, 100, 131, 220, 248
BmrFI CCNGG 9 cut(s) 38, 50, 75, 103, 176, 260, 332, 389, 467
BmsI GCATC 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 125
Bpu1102I GCTNAGC 1 cut(s) 420
BpuMI CCSGG 6 cut(s) 38, 50, 75, 103, 260, 467
BsaJI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BsaWI WCCGGW 3 cut(s) 64, 215, 362
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 327, 357
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 44, 55, 165, 235, 277
Bse1I ACTGG 1 cut(s) 250
BseAI TCCGGA 2 cut(s) 64, 362
BseBI CCWGG 3 cut(s) 176, 332, 389
BseDI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BseLI CCNNNNNNNGG 6 cut(s) 43, 44, 55, 165, 235, 277
BseMII CTCAG 2 cut(s) 104, 116
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 2 cut(s) 351, 537
BseSI GKGCMC 2 cut(s) 50, 215
BshFI GGCC 4 cut(s) 5, 48, 180, 401
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 9 cut(s) 38, 50, 65, 74, 102, 216, 260, 363, 467
BslI CCNNNNNNNGG 6 cut(s) 43, 44, 55, 165, 235, 277
BsnI GGCC 4 cut(s) 5, 48, 180, 401
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 2 cut(s) 50, 215
Bsp13I TCCGGA 2 cut(s) 64, 362
Bsp143I GATC 8 cut(s) 98, 190, 280, 301, 310, 359, 459, 565
Bsp1720I GCTNAGC 1 cut(s) 420
BspACI CCGC 8 cut(s) 6, 9, 24, 119, 185, 233, 428, 488
BspANI GGCC 4 cut(s) 5, 48, 180, 401
BspCNI CTCAG 2 cut(s) 103, 117
BspEI TCCGGA 2 cut(s) 64, 362
BspLI GGNNCC 5 cut(s) 48, 100, 131, 220, 248
BspPI GGATC 9 cut(s) 93, 106, 185, 288, 305, 309, 354, 454, 560
BsrBI CCGCTC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BssMI GATC 8 cut(s) 98, 190, 280, 301, 310, 359, 459, 565
Bst2UI CCWGG 3 cut(s) 176, 332, 389
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 399, 426
BstDEI CTNAG 3 cut(s) 90, 125, 420
BstKTI GATC 8 cut(s) 101, 193, 283, 304, 313, 362, 462, 568
BstMBI GATC 8 cut(s) 98, 190, 280, 301, 310, 359, 459, 565
BstMWI GCNNNNNNNGC 2 cut(s) 398, 425
BstNI CCWGG 3 cut(s) 176, 332, 389
BstPAI GACNNNNGTC 1 cut(s) 161
BstSCI CCNGG 9 cut(s) 36, 48, 73, 101, 174, 258, 330, 387, 465
BstSLI GKGCMC 2 cut(s) 50, 215
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 3 cut(s) 98, 280, 459
BstYI RGATCY 3 cut(s) 98, 280, 459
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 4 cut(s) 5, 48, 180, 401
BtsIMutI CAGTG 2 cut(s) 288, 561
Cac8I GCNNGC 2 cut(s) 399, 426
Cfr13I GGNCC 4 cut(s) 46, 47, 178, 247
CseI GACGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 182, 230, 308
CviJI RGCY 9 cut(s) 5, 41, 48, 124, 180, 392, 397, 401, 419
CviKI_1 RGCY 9 cut(s) 5, 41, 48, 124, 180, 392, 397, 401, 419
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 90, 125, 420
DpnI GATC 8 cut(s) 100, 192, 282, 303, 312, 361, 461, 567
DpnII GATC 8 cut(s) 98, 190, 280, 301, 310, 359, 459, 565
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 2 cut(s) 3, 399
EciI GGCGGA 2 cut(s) 443, 503
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 3 cut(s) 174, 330, 387
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 3 cut(s) 185, 233, 311
FaiI YATR 4 cut(s) 183, 231, 309, 582
FatI CATG 3 cut(s) 181, 229, 307
Fnu4HI GCNGC 2 cut(s) 6, 9
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
HaeIII GGCC 4 cut(s) 5, 48, 180, 401
HapII CCGG 9 cut(s) 38, 50, 65, 74, 102, 216, 260, 363, 467
HgaI GACGC 1 cut(s) 328
Hin1II CATG 3 cut(s) 185, 233, 311
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 53, 366, 407
HpaII CCGG 9 cut(s) 38, 50, 65, 74, 102, 216, 260, 363, 467
HphI GGTGA 2 cut(s) 163, 463
Hpy166II GTNNAC 2 cut(s) 31, 213
Hpy188I TCNGA 4 cut(s) 16, 58, 98, 575
Hpy188III TCNNGA 4 cut(s) 65, 80, 363, 512
Hpy8I GTNNAC 2 cut(s) 31, 213
Hpy99I CGWCG 1 cut(s) 322
HpyAV CCTTC 4 cut(s) 406, 430, 439, 547
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 2 cut(s) 213, 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 425
HpyF3I CTNAG 3 cut(s) 90, 125, 420
Hsp92II CATG 3 cut(s) 185, 233, 311
Kpn2I TCCGGA 2 cut(s) 64, 362
Kzo9I GATC 8 cut(s) 98, 190, 280, 301, 310, 359, 459, 565
LmnI GCTCC 2 cut(s) 116, 121
LweI GCATC 1 cut(s) 566
MaeIII GTNAC 2 cut(s) 77, 451
MalI GATC 8 cut(s) 100, 192, 282, 303, 312, 361, 461, 567
MbiI CCGCTC 1 cut(s) 119
MboI GATC 8 cut(s) 98, 190, 280, 301, 310, 359, 459, 565
MboII GAAGA 1 cut(s) 166
MflI RGATCY 3 cut(s) 98, 280, 459
MhlI GDGCHC 2 cut(s) 50, 215
MluCI AATT 5 cut(s) 19, 83, 196, 203, 476
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 9 cut(s) 120, 154, 229, 329, 397, 473, 484, 515, 518
MroI TCCGGA 2 cut(s) 64, 362
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 9 cut(s) 38, 50, 65, 74, 102, 216, 260, 363, 467
MspR9I CCNGG 9 cut(s) 38, 50, 75, 103, 176, 260, 332, 389, 467
MvaI CCWGG 3 cut(s) 176, 332, 389
MwoI GCNNNNNNNGC 2 cut(s) 398, 425
NciI CCSGG 6 cut(s) 38, 50, 75, 103, 260, 467
NdeII GATC 8 cut(s) 98, 190, 280, 301, 310, 359, 459, 565
NlaIII CATG 3 cut(s) 185, 233, 311
NlaIV GGNNCC 5 cut(s) 48, 100, 131, 220, 248
NmeAIII GCCGAG 3 cut(s) 373, 427, 574
NmuCI GTSAC 2 cut(s) 77, 451
PasI CCCWGGG 1 cut(s) 175
PfeI GAWTC 2 cut(s) 366, 407
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 161
Psp6I CCWGG 3 cut(s) 174, 330, 387
PspGI CCWGG 3 cut(s) 174, 330, 387
PspN4I GGNNCC 5 cut(s) 48, 100, 131, 220, 248
PspOMI GGGCCC 1 cut(s) 46
PspPI GGNCC 4 cut(s) 46, 47, 178, 247
PsuI RGATCY 3 cut(s) 98, 280, 459
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 8 cut(s) 98, 190, 280, 301, 310, 359, 459, 565
Sau96I GGNCC 4 cut(s) 46, 47, 178, 247
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 9 cut(s) 38, 50, 75, 103, 176, 260, 332, 389, 467
SduI GDGCHC 2 cut(s) 50, 215
SetI ASST 7 cut(s) 126, 131, 165, 240, 421, 450, 529
SfaNI GCATC 1 cut(s) 566
SinI GGWCC 1 cut(s) 247
Sse9I AATT 5 cut(s) 19, 83, 196, 203, 476
SsiI CCGC 8 cut(s) 6, 9, 24, 119, 185, 233, 428, 488
StyD4I CCNGG 9 cut(s) 36, 48, 73, 101, 174, 258, 330, 387, 465
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 2 cut(s) 410, 513
TaqII GACCGA 1 cut(s) 173
TasI AATT 5 cut(s) 19, 83, 196, 203, 476
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 2 cut(s) 366, 407
TscAI CASTG 2 cut(s) 295, 568
TseFI GTSAC 2 cut(s) 77, 451
Tsp45I GTSAC 2 cut(s) 77, 451
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 2 cut(s) 295, 568
VneI GTGCAC 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 2 cut(s) 83, 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.