RLG00000004422

Peptide methionine sulfoxide reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010798
Physical Location & Seq
Forward (+)
59234490 .. 59235769
1280 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004422

Sequence Viewer

Length: 771 bp
ATGCCCGATAACCACTCCGGCACGTCCACTTCACTGTTAACGTTGACGGAAAAGTACACCAAGATTCGTTTCAGATATGATACGACACGTCGTTCCAACCAGTCTGTATCTGACTGGCTTTGGCGGGTGGATTCATTCTCCGAGACCAATCACATTTCTGCATATAAAGCCCGAAACACTCTTGCTGAAGTCAAACTCAGAATGGCTTCCACTACCAACCCAGCTCTCGACCCAGATTCGGACATTCCGGATAACCCGGGTCACGAGTTTGCTCAATTCGGGTCGGGTTGCTTCTGGGGAGCCGAGCTCAGGTTTCAGCGGGTCGTCGGCGTGGTCAAGACCGAGGTTGGGTACTCCCAGGGCCACGTCCACGACCCGAATTACAAGCTGGTCTGCTCCGGAACCACTAACCACGCCGAGGTGGTTCGGGTCCAGTTCGACCCTCAAGTCTGCCCATATTCGGACCTGCTTTCCGTCTTTTGGTCTCGTCATGATCCAACCACCCTCAATCGCCAGGGTGGAGATGTGGGAACTCAATATCGATCTGGAATATACTACTACAACGAAACGCAGGCTCGTCTAGCCGAGGAATCGAAGGAAGCAAAGCAAAAGGAGTTTAAGGACAAGAGGGTGGTGACAGAGATTCTTCCAGCAAAGAAGTTTTACAGGGCAGAGGAATACCATCAACAATATCTGGAAAAAGGAGGAGGTAATGGCAACAAACAATCTGCTCAAAAGGGTGGCAATGATCCTATTCGATGCTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

257

Amino Acids

29.09

Weight (kDa)

8.24

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 91 - 235 1.6e-59 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 446
Acc36I ACCTGC 1 cut(s) 474
AccIII TCCGGA 2 cut(s) 247, 398
AciI CCGC 2 cut(s) 124, 319
AclI AACGTT 1 cut(s) 41
AclWI GGATC 2 cut(s) 488, 743
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 2 cut(s) 56, 353
AfiI CCNNNNNNNGG 6 cut(s) 238, 309, 348, 418, 460, 480
AflIII ACRYGT 1 cut(s) 86
AjiI CACGTC 3 cut(s) 24, 89, 367
AjnI CCWGG 2 cut(s) 357, 513
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 3 cut(s) 224, 307, 388
AluI AGCT 3 cut(s) 224, 307, 388
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 137, 489
AlwI GGATC 2 cut(s) 488, 743
Ama87I CYCGRG 1 cut(s) 256
Aor13HI TCCGGA 2 cut(s) 247, 398
AoxI GGCC 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 205
AspS9I GGNCC 3 cut(s) 361, 430, 463
AsuC2I CCSGG 2 cut(s) 257, 258
AsuHPI GGTGA 1 cut(s) 646
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 2 cut(s) 430, 463
BanII GRGCYC 1 cut(s) 309
BauI CACGAG 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 309
BccI CCATC 1 cut(s) 690
BciT130I CCWGG 2 cut(s) 359, 515
BcnI CCSGG 2 cut(s) 257, 258
BcoDI GTCTC 2 cut(s) 137, 489
BfaI CTAG 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 474
Bme1390I CCNGG 4 cut(s) 257, 258, 359, 515
Bme18I GGWCC 2 cut(s) 430, 463
BmeT110I CYCGRG 1 cut(s) 256
BmgBI CACGTC 3 cut(s) 24, 89, 367
BmgT120I GGNCC 3 cut(s) 361, 430, 463
BmiI GGNNCC 3 cut(s) 301, 403, 431
BmrFI CCNGG 4 cut(s) 257, 258, 359, 515
BmsI GCATC 1 cut(s) 749
BplI GAGNNNNNCTC 2 cut(s) 291, 323
Bpu10I CCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 2 cut(s) 257, 258
Bsa29I ATCGAT 1 cut(s) 541
BsaI GGTCTC 2 cut(s) 137, 489
BsaJI CCNNGG 7 cut(s) 256, 342, 357, 358, 417, 514, 585
BsaWI WCCGGW 2 cut(s) 247, 398
Bsc4I CCNNNNNNNGG 6 cut(s) 238, 309, 348, 418, 460, 480
Bse1I ACTGG 3 cut(s) 100, 119, 433
Bse3DI GCAATG 1 cut(s) 751
BseAI TCCGGA 2 cut(s) 247, 398
BseBI CCWGG 2 cut(s) 359, 515
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 7 cut(s) 256, 342, 357, 358, 417, 514, 585
BseLI CCNNNNNNNGG 6 cut(s) 238, 309, 348, 418, 460, 480
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 2 cut(s) 211, 322
BseNI ACTGG 3 cut(s) 100, 119, 433
BseRI GAGGAG 1 cut(s) 720
BseYI CCCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 363
BshVI ATCGAT 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 256
BsiSI CCGG 4 cut(s) 18, 248, 257, 399
BslI CCNNNNNNNGG 6 cut(s) 238, 309, 348, 418, 460, 480
BsmAI GTCTC 2 cut(s) 137, 489
BsnI GGCC 1 cut(s) 363
Bso31I GGTCTC 2 cut(s) 137, 489
BsoBI CYCGRG 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 309
Bsp13I TCCGGA 2 cut(s) 247, 398
Bsp143I GATC 3 cut(s) 493, 542, 748
BspACI CCGC 2 cut(s) 124, 319
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 2 cut(s) 210, 321
BspDI ATCGAT 1 cut(s) 541
BspEI TCCGGA 2 cut(s) 247, 398
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 301, 403, 431
BspMI ACCTGC 1 cut(s) 474
BspPI GGATC 2 cut(s) 488, 743
BspTNI GGTCTC 2 cut(s) 137, 489
BsrDI GCAATG 1 cut(s) 751
BsrI ACTGG 3 cut(s) 100, 119, 433
BssECI CCNNGG 7 cut(s) 256, 342, 357, 358, 417, 514, 585
BssMI GATC 3 cut(s) 493, 542, 748
BssSI CACGAG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 2 cut(s) 359, 515
Bst4CI ACNGT 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 573
BstDEI CTNAG 2 cut(s) 197, 308
BstKTI GATC 3 cut(s) 496, 545, 751
BstMAI GTCTC 2 cut(s) 137, 489
BstMBI GATC 3 cut(s) 493, 542, 748
BstMWI GCNNNNNNNGC 2 cut(s) 167, 581
BstNI CCWGG 2 cut(s) 359, 515
BstSCI CCNGG 4 cut(s) 255, 256, 357, 513
Bsu15I ATCGAT 1 cut(s) 541
BsuRI GGCC 1 cut(s) 363
BsuTUI ATCGAT 1 cut(s) 541
BtrI CACGTC 3 cut(s) 24, 89, 367
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 573
CciI TCATGA 1 cut(s) 490
Cfr13I GGNCC 3 cut(s) 361, 430, 463
Cfr9I CCCGGG 1 cut(s) 256
ClaI ATCGAT 1 cut(s) 541
Csp6I GTAC 2 cut(s) 55, 352
CviAII CATG 1 cut(s) 491
CviQI GTAC 2 cut(s) 55, 352
DdeI CTNAG 2 cut(s) 197, 308
DpnI GATC 3 cut(s) 495, 544, 750
DpnII GATC 3 cut(s) 493, 542, 748
DrdI GACNNNNNNGTC 1 cut(s) 446
DseDI GACNNNNNNGTC 1 cut(s) 446
Ecl136II GAGCTC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 2 cut(s) 137, 489
Eco47I GGWCC 2 cut(s) 430, 463
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 357, 513
EcoT38I GRGCYC 1 cut(s) 309
FaeI CATG 1 cut(s) 494
FaiI YATR 7 cut(s) 78, 163, 165, 457, 492, 553, 765
FatI CATG 1 cut(s) 490
FauI CCCGC 2 cut(s) 117, 312
FriOI GRGCYC 1 cut(s) 309
FspBI CTAG 1 cut(s) 581
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 1 cut(s) 363
HapII CCGG 4 cut(s) 18, 248, 257, 399
Hin1II CATG 1 cut(s) 494
HincII GTYRAC 2 cut(s) 39, 45
HindII GTYRAC 2 cut(s) 39, 45
HinfI GANTC 5 cut(s) 64, 131, 236, 590, 643
HpaI GTTAAC 1 cut(s) 39
HpaII CCGG 4 cut(s) 18, 248, 257, 399
HphI GGTGA 1 cut(s) 646
Hpy166II GTNNAC 5 cut(s) 27, 39, 45, 57, 370
Hpy188I TCNGA 6 cut(s) 74, 112, 142, 200, 241, 463
Hpy188III TCNNGA 8 cut(s) 227, 248, 263, 337, 399, 491, 546, 695
Hpy8I GTNNAC 5 cut(s) 27, 39, 45, 57, 370
Hpy99I CGWCG 2 cut(s) 93, 329
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 4 cut(s) 23, 41, 88, 366
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 581
HpyF3I CTNAG 2 cut(s) 197, 308
HpySE526I ACGT 4 cut(s) 23, 41, 88, 366
Hsp92II CATG 1 cut(s) 494
Kpn2I TCCGGA 2 cut(s) 247, 398
KspAI GTTAAC 1 cut(s) 39
Kzo9I GATC 3 cut(s) 493, 542, 748
LmnI GCTCC 2 cut(s) 299, 401
LweI GCATC 1 cut(s) 749
MaeI CTAG 1 cut(s) 581
MaeII ACGT 4 cut(s) 23, 41, 88, 366
MaeIII GTNAC 2 cut(s) 260, 634
MalI GATC 3 cut(s) 495, 544, 750
MboI GATC 3 cut(s) 493, 542, 748
MboII GAAGA 1 cut(s) 638
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 275, 379
MmeI TCCRAC 2 cut(s) 120, 521
MnlI CCTC 9 cut(s) 337, 412, 453, 515, 580, 621, 667, 698, 701
MroI TCCGGA 2 cut(s) 247, 398
MroXI GAANNNNTTC 1 cut(s) 205
MseI TTAA 2 cut(s) 38, 618
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 4 cut(s) 18, 248, 257, 399
MspR9I CCNGG 4 cut(s) 257, 258, 359, 515
MvaI CCWGG 2 cut(s) 359, 515
MwoI GCNNNNNNNGC 2 cut(s) 167, 581
NciI CCSGG 2 cut(s) 257, 258
NdeII GATC 3 cut(s) 493, 542, 748
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 3 cut(s) 301, 403, 431
NmeAIII GCCGAG 3 cut(s) 328, 442, 610
NmuCI GTSAC 2 cut(s) 260, 634
PagI TCATGA 1 cut(s) 490
PasI CCCWGGG 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 205
PfeI GAWTC 5 cut(s) 64, 131, 236, 590, 643
Psp124BI GAGCTC 1 cut(s) 309
Psp1406I AACGTT 1 cut(s) 41
Psp6I CCWGG 2 cut(s) 357, 513
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 2 cut(s) 357, 513
PspN4I GGNNCC 3 cut(s) 301, 403, 431
PspPI GGNCC 3 cut(s) 361, 430, 463
RsaI GTAC 2 cut(s) 56, 353
RsaNI GTAC 2 cut(s) 55, 352
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 38, 618
Sau3AI GATC 3 cut(s) 493, 542, 748
Sau96I GGNCC 3 cut(s) 361, 430, 463
ScrFI CCNGG 4 cut(s) 257, 258, 359, 515
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 1 cut(s) 749
SinI GGWCC 2 cut(s) 430, 463
SmaI CCCGGG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 2 cut(s) 275, 379
SsiI CCGC 2 cut(s) 124, 319
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 4 cut(s) 255, 256, 357, 513
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 4 cut(s) 26, 44, 91, 369
TaqI TCGA 5 cut(s) 228, 438, 541, 593, 757
TaqII GACCGA 1 cut(s) 356
TasI AATT 2 cut(s) 275, 379
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 5 cut(s) 64, 131, 236, 590, 643
Tru1I TTAA 2 cut(s) 38, 618
Tru9I TTAA 2 cut(s) 38, 618
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 2 cut(s) 260, 634
Tsp45I GTSAC 2 cut(s) 260, 634
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 2 cut(s) 62, 463
TspMI CCCGGG 1 cut(s) 256
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 2 cut(s) 430, 463
XmaI CCCGGG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 205
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.