Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010798

Physical Location & Seq

Genomic Coordinates Forward (+)

28162243 .. 28162702

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1182900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGATGAAGACCAAGGTTGGGTACACCCAGGGGTTTCTGCACAACCCGAGTTACGAGGACGTGTGTACTGGCACCACCCAGCATTCGGAGGTTGTGAGAGTGCAGTACGATCCTAAAGAGTGCAACTTTAAGAGCCTGCTCGATCTCTTCTGGTCCAGGCACGACCCCACCACACTCAATCGTCAGGTAGACATTGAAGACGAAGATGATGATGCAGAGAACAATGGCGACGATGACGAGTGCGAGGTTGAAATCACCCATCGCGGAGACGTCGTTTCAGCTGCTCTCAAATCGAATCGGAGAGATCGAGAAGGGGAATCAGAAATTAGGGTTAGGGATGTGAAATTACGCGTTCAAGTGATCGCAGATCTCTGTCGCTGGTCCGAAAAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

132

Amino Acids

15.2

Weight (kDa)

4.72

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	2 - 63	2.7e-22	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25130
fragaria_vesca	FvH4_5g06741 FvH4_5g06742
malus_domestica	MD01G1182900.v1.1 MD04G1132300.v1.1 MD06G1160700.v1.1 MD06G1160900.v1.1 MD14G1166700.v1.1
prunus_persica	Prupe.5G161000_v2.0.a1
pyrus_communis	pycom06g14370 pycom14g13930
rosa_chinensis	RchiOBHm_Chr7g0191801
rosa_laevigata	RLG00000004422
rosa_roxburghii	Rroxscaffold_3G00263510
rosa_rugosa	Rorug06G0511500
rosa_samantha	Rh7AG121600 Rh7BG123000 Rh7CG125900 Rh7DG124700
rosa_wichuraiana	Rw7G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	2 cut(s)	264, 351
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	3 cut(s)	23, 67, 107
AfiI	CCNNNNNNNGG	2 cut(s)	18, 85
AflIII	ACRYGT	2 cut(s)	60, 349
AgsI	TTSAA	3 cut(s)	197, 251, 356
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	2 cut(s)	27, 155
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	153, 381
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	153, 381
BanI	GGYRCC	1 cut(s)	71
BbsI	GAAGAC	2 cut(s)	14, 204
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	267
BciT130I	CCWGG	2 cut(s)	29, 157
BcoDI	GTCTC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	367
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme1390I	CCNGG	2 cut(s)	29, 157
Bme18I	GGWCC	2 cut(s)	153, 381
BmeT110I	CYCGRG	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	153, 381
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	2 cut(s)	29, 157
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	2 cut(s)	14, 204
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	12, 27, 28
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 85
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	29, 157
BseDI	CCNNGG	3 cut(s)	12, 27, 28
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	18, 85
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	268
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	2 cut(s)	23, 122
Bsh1236I	CGCG	2 cut(s)	264, 351
BshNI	GGYRCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	18, 85
BsmAI	GTCTC	1 cut(s)	261
BsmBI	CGTCTC	1 cut(s)	261
BsmI	GAATGC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	46
Bsp143I	GATC	5 cut(s)	109, 142, 304, 360, 367
BspACI	CCGC	1 cut(s)	264
BspFNI	CGCG	2 cut(s)	264, 351
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	3 cut(s)	12, 27, 28
BssMI	GATC	5 cut(s)	109, 142, 304, 360, 367
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	2 cut(s)	29, 157
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	2 cut(s)	264, 351
BstKTI	GATC	5 cut(s)	112, 145, 307, 363, 370
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	5 cut(s)	109, 142, 304, 360, 367
BstNI	CCWGG	2 cut(s)	29, 157
BstSCI	CCNGG	2 cut(s)	27, 155
BstUI	CGCG	2 cut(s)	264, 351
BstV1I	GCAGC	1 cut(s)	268
BstV2I	GAAGAC	2 cut(s)	14, 204
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	153, 381
Csp6I	GTAC	3 cut(s)	22, 66, 106
CviJI	RGCY	2 cut(s)	135, 281
CviKI_1	RGCY	2 cut(s)	135, 281
CviQI	GTAC	3 cut(s)	22, 66, 106
DpnI	GATC	5 cut(s)	111, 144, 306, 362, 369
DpnII	GATC	5 cut(s)	109, 142, 304, 360, 367
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	2 cut(s)	153, 381
Eco88I	CYCGRG	1 cut(s)	46
EcoRII	CCWGG	2 cut(s)	27, 155
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	282
GsaI	CCCAGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	295, 317
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	24, 66, 190
Hpy188I	TCNGA	4 cut(s)	88, 300, 322, 385
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	3 cut(s)	24, 66, 190
Hpy99I	CGWCG	2 cut(s)	233, 275
HpyAV	CCTTC	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	60, 270
HpyCH4V	TGCA	4 cut(s)	40, 103, 123, 215
HpySE526I	ACGT	2 cut(s)	60, 270
Hsp92I	GRCGYC	1 cut(s)	270
Kzo9I	GATC	5 cut(s)	109, 142, 304, 360, 367
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	2 cut(s)	60, 270
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	5 cut(s)	111, 144, 306, 362, 369
MboI	GATC	5 cut(s)	109, 142, 304, 360, 367
MboII	GAAGA	4 cut(s)	19, 139, 209, 215
MflI	RGATCY	1 cut(s)	367
MluCI	AATT	2 cut(s)	324, 344
MluI	ACGCGT	1 cut(s)	349
MnlI	CCTC	3 cut(s)	49, 82, 238
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	29, 157
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	2 cut(s)	29, 157
MvnI	CGCG	2 cut(s)	264, 351
NdeII	GATC	5 cut(s)	109, 142, 304, 360, 367
NlaIV	GGNNCC	1 cut(s)	73
PasI	CCCWGGG	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PctI	GAATGC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	295, 317
PkrI	GCNGC	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	27, 155
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	27, 155
PspN4I	GGNNCC	1 cut(s)	73
PspPI	GGNCC	2 cut(s)	153, 381
PsuI	RGATCY	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	3 cut(s)	23, 67, 107
RsaNI	GTAC	3 cut(s)	22, 66, 106
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	5 cut(s)	109, 142, 304, 360, 367
Sau96I	GGNCC	2 cut(s)	153, 381
ScrFI	CCNGG	2 cut(s)	29, 157
SetI	ASST	7 cut(s)	18, 63, 93, 189, 249, 273, 283
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	2 cut(s)	153, 381
Sse9I	AATT	2 cut(s)	324, 344
SsiI	CCGC	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	27, 155
StyI	CCWWGG	1 cut(s)	12
TaiI	ACGT	2 cut(s)	63, 273
TaqI	TCGA	3 cut(s)	141, 293, 307
TasI	AATT	2 cut(s)	324, 344
TatI	WGTACW	1 cut(s)	65
TfiI	GAWTC	2 cut(s)	295, 317
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	153, 381
XmiI	GTMKAC	1 cut(s)	189
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.