MD14G1166700.v1.1

Peptide methionine sulfoxide reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0010798
Physical Location & Seq
Reverse (-)
25993193 .. 25994780
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1166700.v1.1.491

Sequence Viewer

Length: 588 bp
ATGACCGCCGCTTCCGGTAACTCCGCCGTCAACAACCCGGCTTTGGGCCCGGACTCGGACGCTCCGGAAAATCAGGGTCACGAGTTCGCCCAATTCGGATCGGGGTGCTTCTGGGGAGCGGAGCTGAGGTTCCAGCGAGTGGTCGGGGTGGTGAAGACCGAGGTCGGGTACTCCCAGGGCCACGTGGACAATCCGAATTACAAATTGGTCTGCTCCGGAACCACGAACCACTCGGAGGTGGTTCGGGTCCAATTTGACCCGGAAGTCTGCTCCTATACGGATCTACTCTCTGTGTTTTGGGATCGTCATGATCCAACGACCCTCAATCGCCAGGGAGGAGATGTTGGTACACAATACCGATCCGGAATCTACTACTACAGTGAAAACCAGGCTCGTCTGGCCGAGGAATCAAAGGAAGCAAAGCAGGCGGAGTTGAAGGATACGGAGGTGGTGACAGAGATCCTCCCGGCGAAGAAGTTTTACGGGGCAGAGGAGTACCACCAGCAATATCTCGAAAAAGGAGGACGCAGGGGCAACAAACAATCTACCGAAAAGGGTTGCACTGATCCCATCAGATGCTACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

196

Amino Acids

21.66

Weight (kDa)

5.27

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 30 - 174 2.1e-59 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 119
AccIII TCCGGA 3 cut(s) 64, 215, 362
AciI CCGC 5 cut(s) 6, 9, 24, 119, 428
AclWI GGATC 7 cut(s) 106, 288, 305, 309, 354, 454, 560
AcoI YGGCCR 1 cut(s) 399
AcvI CACGTG 1 cut(s) 184
AfaI GTAC 3 cut(s) 170, 349, 497
AfiI CCNNNNNNNGG 6 cut(s) 43, 44, 55, 139, 165, 235
AgsI TTSAA 1 cut(s) 436
AjnI CCWGG 3 cut(s) 174, 330, 387
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwI GGATC 7 cut(s) 106, 288, 305, 309, 354, 454, 560
Aor13HI TCCGGA 3 cut(s) 64, 215, 362
AoxI GGCC 3 cut(s) 46, 178, 399
ApaI GGGCCC 1 cut(s) 50
AspS9I GGNCC 4 cut(s) 46, 47, 178, 247
AsuC2I CCSGG 4 cut(s) 38, 50, 260, 467
AsuHPI GGTGA 2 cut(s) 163, 463
AvaII GGWCC 1 cut(s) 247
BaeGI GKGCMC 1 cut(s) 50
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
BanII GRGCYC 1 cut(s) 50
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BauI CACGAG 1 cut(s) 80
BbrPI CACGTG 1 cut(s) 184
BbsI GAAGAC 1 cut(s) 161
BbvCI CCTCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 578
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 3 cut(s) 176, 332, 389
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 4 cut(s) 38, 50, 260, 467
BfmI CTRYAG 1 cut(s) 376
BfuI GTATCC 1 cut(s) 433
BisI GCNGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 10
Bme1390I CCNGG 7 cut(s) 38, 50, 176, 260, 332, 389, 467
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 4 cut(s) 46, 47, 178, 247
BmiI GGNNCC 4 cut(s) 48, 131, 220, 248
BmrFI CCNGG 7 cut(s) 38, 50, 176, 260, 332, 389, 467
BmsI GCATC 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 125
BpuMI CCSGG 4 cut(s) 38, 50, 260, 467
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BsaWI WCCGGW 4 cut(s) 14, 64, 215, 362
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 327, 357
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 44, 55, 139, 165, 235
BseAI TCCGGA 3 cut(s) 64, 215, 362
BseBI CCWGG 3 cut(s) 176, 332, 389
BseDI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BseLI CCNNNNNNNGG 6 cut(s) 43, 44, 55, 139, 165, 235
BseMII CTCAG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 351, 506
BseSI GKGCMC 1 cut(s) 50
BshFI GGCC 3 cut(s) 48, 180, 401
BsiSI CCGG 8 cut(s) 15, 38, 50, 65, 216, 260, 363, 467
BslI CCNNNNNNNGG 6 cut(s) 43, 44, 55, 139, 165, 235
BsnI GGCC 3 cut(s) 48, 180, 401
Bsp120I GGGCCC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 50
Bsp13I TCCGGA 3 cut(s) 64, 215, 362
Bsp143I GATC 7 cut(s) 98, 280, 301, 310, 359, 459, 565
BspACI CCGC 5 cut(s) 6, 9, 24, 119, 428
BspANI GGCC 3 cut(s) 48, 180, 401
BspCNI CTCAG 1 cut(s) 117
BspEI TCCGGA 3 cut(s) 64, 215, 362
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 4 cut(s) 48, 131, 220, 248
BspPI GGATC 7 cut(s) 106, 288, 305, 309, 354, 454, 560
BsrBI CCGCTC 1 cut(s) 119
BssECI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BssMI GATC 7 cut(s) 98, 280, 301, 310, 359, 459, 565
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 3 cut(s) 176, 332, 389
Bst4CI ACNGT 2 cut(s) 380, 584
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 1 cut(s) 125
BstKTI GATC 7 cut(s) 101, 283, 304, 313, 362, 462, 568
BstMBI GATC 7 cut(s) 98, 280, 301, 310, 359, 459, 565
BstMWI GCNNNNNNNGC 2 cut(s) 398, 425
BstNI CCWGG 3 cut(s) 176, 332, 389
BstPAI GACNNNNGTC 1 cut(s) 161
BstSCI CCNGG 7 cut(s) 36, 48, 174, 258, 330, 387, 465
BstSFI CTRYAG 1 cut(s) 376
BstSLI GKGCMC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 280, 459
BstYI RGATCY 2 cut(s) 280, 459
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 3 cut(s) 48, 180, 401
BtsIMutI CAGTG 2 cut(s) 385, 561
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 4 cut(s) 46, 47, 178, 247
CseI GACGC 2 cut(s) 68, 534
Csp6I GTAC 3 cut(s) 169, 348, 496
CviAII CATG 1 cut(s) 308
CviJI RGCY 6 cut(s) 41, 48, 124, 180, 392, 401
CviKI_1 RGCY 6 cut(s) 41, 48, 124, 180, 392, 401
CviQI GTAC 3 cut(s) 169, 348, 496
DdeI CTNAG 1 cut(s) 125
DpnI GATC 7 cut(s) 100, 282, 303, 312, 361, 461, 567
DpnII GATC 7 cut(s) 98, 280, 301, 310, 359, 459, 565
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 399
EciI GGCGGA 2 cut(s) 13, 443
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 247
Eco72I CACGTG 1 cut(s) 184
EcoRII CCWGG 3 cut(s) 174, 330, 387
EcoT38I GRGCYC 1 cut(s) 50
FaeI CATG 1 cut(s) 311
FaiI YATR 2 cut(s) 276, 309
FatI CATG 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 9
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 9
HaeIII GGCC 3 cut(s) 48, 180, 401
HapII CCGG 8 cut(s) 15, 38, 50, 65, 216, 260, 363, 467
HgaI GACGC 2 cut(s) 68, 534
Hin1II CATG 1 cut(s) 311
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 53, 366, 407
HpaII CCGG 8 cut(s) 15, 38, 50, 65, 216, 260, 363, 467
HphI GGTGA 2 cut(s) 163, 463
Hpy166II GTNNAC 3 cut(s) 31, 187, 350
Hpy188I TCNGA 5 cut(s) 58, 98, 195, 235, 575
Hpy188III TCNNGA 6 cut(s) 65, 80, 216, 308, 363, 512
Hpy8I GTNNAC 3 cut(s) 31, 187, 350
HpyAV CCTTC 1 cut(s) 430
HpyCH4III ACNGT 2 cut(s) 380, 584
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 425
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 311
Kpn2I TCCGGA 3 cut(s) 64, 215, 362
Kzo9I GATC 7 cut(s) 98, 280, 301, 310, 359, 459, 565
LmnI GCTCC 5 cut(s) 67, 116, 121, 218, 275
LweI GCATC 1 cut(s) 566
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 3 cut(s) 17, 77, 451
MalI GATC 7 cut(s) 100, 282, 303, 312, 361, 461, 567
MbiI CCGCTC 1 cut(s) 119
MboI GATC 7 cut(s) 98, 280, 301, 310, 359, 459, 565
MboII GAAGA 2 cut(s) 166, 484
MflI RGATCY 2 cut(s) 280, 459
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 4 cut(s) 92, 196, 203, 251
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 338
MroI TCCGGA 3 cut(s) 64, 215, 362
MspI CCGG 8 cut(s) 15, 38, 50, 65, 216, 260, 363, 467
MspR9I CCNGG 7 cut(s) 38, 50, 176, 260, 332, 389, 467
MvaI CCWGG 3 cut(s) 176, 332, 389
MwoI GCNNNNNNNGC 2 cut(s) 398, 425
NciI CCSGG 4 cut(s) 38, 50, 260, 467
NdeII GATC 7 cut(s) 98, 280, 301, 310, 359, 459, 565
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 4 cut(s) 48, 131, 220, 248
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 77, 451
PagI TCATGA 1 cut(s) 307
PasI CCCWGGG 1 cut(s) 175
PfeI GAWTC 2 cut(s) 366, 407
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 1 cut(s) 10
PleI GAGTC 1 cut(s) 47
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
PpsI GAGTC 1 cut(s) 47
Ppu21I YACGTR 1 cut(s) 184
PshAI GACNNNNGTC 1 cut(s) 161
Psp6I CCWGG 3 cut(s) 174, 330, 387
PspCI CACGTG 1 cut(s) 184
PspGI CCWGG 3 cut(s) 174, 330, 387
PspN4I GGNNCC 4 cut(s) 48, 131, 220, 248
PspOMI GGGCCC 1 cut(s) 46
PspPI GGNCC 4 cut(s) 46, 47, 178, 247
PsuI RGATCY 2 cut(s) 280, 459
RsaI GTAC 3 cut(s) 170, 349, 497
RsaNI GTAC 3 cut(s) 169, 348, 496
SatI GCNGC 1 cut(s) 9
Sau3AI GATC 7 cut(s) 98, 280, 301, 310, 359, 459, 565
Sau96I GGNCC 4 cut(s) 46, 47, 178, 247
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 7 cut(s) 38, 50, 176, 260, 332, 389, 467
SduI GDGCHC 1 cut(s) 50
SetI ASST 6 cut(s) 126, 131, 165, 186, 240, 450
SfaNI GCATC 1 cut(s) 566
SfcI CTRYAG 1 cut(s) 376
SinI GGWCC 1 cut(s) 247
Sse9I AATT 4 cut(s) 92, 196, 203, 251
SsiI CCGC 5 cut(s) 6, 9, 24, 119, 428
StyD4I CCNGG 7 cut(s) 36, 48, 174, 258, 330, 387, 465
TaaI ACNGT 2 cut(s) 380, 584
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 513
TaqII GACCGA 1 cut(s) 173
TasI AATT 4 cut(s) 92, 196, 203, 251
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 2 cut(s) 366, 407
TscAI CASTG 2 cut(s) 385, 568
TseFI GTSAC 2 cut(s) 77, 451
Tsp45I GTSAC 2 cut(s) 77, 451
TspGWI ACGGA 2 cut(s) 293, 458
TspRI CASTG 2 cut(s) 385, 568
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.