Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010798

Physical Location & Seq

Genomic Coordinates Forward (+)

21906102 .. 21907077

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1132300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTGCAAATCCAATCCTCTCCCTCCCTCAACCCCGACCCACTCAATTAAAAAAAAAAAAGTTTTTAGGCACACCCTCTCCCTCCCTTCTCTCCTCCGCACACCCTCCTCAGCTGTCATCGTCCAATTCACCTGCCAAAAGGACCTCCAAAATGGCAAGTCTGTCCACGCCCACATCATCAAAGCCGGTCCCATATCCTGCGTATACATCGCCAACACCGTCGTCAACTTCTACGCCAAATGCGGGGACTTGCCCGGACCCCACCTCGTATTTGATGCCATTTCTGACAATGACGTCGTCTCCTGGAACTCTCTCACCAATGGCTACTCCCAGCAGGGTCTCCGAGCCTCCTTTCTCATCGTTATCGAGCTTTTCTGGCTCATGCGGGCGGAGAACGTGTTCCCCAATGTGCACACTTTTTCCGGCGTCTTCACGGGTCAACATTTCACTCATTTTGGAGACAGGTGCTTCCGGGGTGTCGAGTTGGAGTTTCAGCGAGTACCCGACGTGACAAAGACAAAGGTTGGGTACACCCAGGGGTTTCTGCACAACCCGAGTTACGAGGTCGTGTGTACCAGCACCACCCAGCACTTGGAGGTTGTGAGAGTGCAGTACGACCCTAAAGAGTGCAACTTTGAGAGCCTGCTCGATCTCTTCTGGTCCAGGCACGACCCCACCACGCTCAATCGCCAGGTAGACATTGAAGACGAAGACGATGATGCAGAGAACAATGGCGATGATAACGAGTGCGAGGTTGAAATCACCCATCGCGGCGGCGTCGTTTCAGCTGCTCTCAAATCGAATCGGAGATATCGAGAAGGGGAATCAGAAATTAGGGTTAGGGATGTGAAATTGCGCGTTCAAGTGATCGCAGATCTCTGTCGCTGGTCCGAAAAGGAGCAGAGCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

304

Amino Acids

34.35

Weight (kDa)

6.18

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	152 - 232	1.8e-26	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25130
fragaria_vesca	FvH4_5g06741 FvH4_5g06742
malus_domestica	MD01G1182900.v1.1 MD04G1132300.v1.1 MD06G1160700.v1.1 MD06G1160900.v1.1 MD14G1166700.v1.1
prunus_persica	Prupe.5G161000_v2.0.a1
pyrus_communis	pycom06g14370 pycom14g13930
rosa_chinensis	RchiOBHm_Chr7g0191801
rosa_laevigata	RLG00000004422
rosa_roxburghii	Rroxscaffold_3G00263510
rosa_rugosa	Rorug06G0511500
rosa_samantha	Rh7AG121600 Rh7BG123000 Rh7CG125900 Rh7DG124700
rosa_wichuraiana	Rw7G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	293
AatII	GACGTC	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccI	GTMKAC	2 cut(s)	204, 696
AccII	CGCG	2 cut(s)	771, 858
AciI	CCGC	6 cut(s)	97, 243, 385, 389, 771, 774
AcyI	GRCGYC	3 cut(s)	294, 426, 777
AfaI	GTAC	4 cut(s)	501, 530, 574, 614
AfiI	CCNNNNNNNGG	2 cut(s)	243, 592
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	3 cut(s)	704, 758, 863
AjiI	CACGTC	1 cut(s)	508
AjnI	CCWGG	4 cut(s)	302, 534, 662, 690
AloI	GAACNNNNNNTCC	2 cut(s)	383, 415
AluBI	AGCT	4 cut(s)	113, 370, 788, 906
AluI	AGCT	4 cut(s)	113, 370, 788, 906
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	3 cut(s)	304, 344, 453
Alw44I	GTGCAC	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	553
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	788
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	858
AspS9I	GGNCC	5 cut(s)	142, 188, 257, 660, 888
AsuC2I	CCSGG	2 cut(s)	255, 473
AsuHPI	GGTGA	3 cut(s)	121, 307, 754
AvaI	CYCGRG	1 cut(s)	553
AvaII	GGWCC	5 cut(s)	142, 188, 257, 660, 888
BaeGI	GKGCMC	1 cut(s)	414
BbsI	GAAGAC	3 cut(s)	421, 711, 717
Bbv12I	GWGCWC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	1 cut(s)	775
BccI	CCATC	1 cut(s)	774
BciT130I	CCWGG	4 cut(s)	304, 536, 664, 692
BcnI	CCSGG	2 cut(s)	255, 473
BcoDI	GTCTC	3 cut(s)	304, 344, 453
BfuAI	ACCTGC	1 cut(s)	140
BglII	AGATCT	1 cut(s)	874
BisI	GCNGC	3 cut(s)	772, 775, 789
BlsI	GCNGC	3 cut(s)	773, 776, 790
Bme1390I	CCNGG	6 cut(s)	255, 304, 473, 536, 664, 692
Bme18I	GGWCC	5 cut(s)	142, 188, 257, 660, 888
BmeT110I	CYCGRG	1 cut(s)	553
BmgBI	CACGTC	1 cut(s)	508
BmgT120I	GGNCC	5 cut(s)	142, 188, 257, 660, 888
BmiI	GGNNCC	2 cut(s)	190, 259
BmrFI	CCNGG	6 cut(s)	255, 304, 473, 536, 664, 692
BmsI	GCATC	2 cut(s)	265, 709
BpiI	GAAGAC	3 cut(s)	421, 711, 717
Bpu10I	CCTNAGC	1 cut(s)	109
BpuMI	CCSGG	2 cut(s)	255, 473
BsaHI	GRCGYC	3 cut(s)	294, 426, 777
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	472, 534, 535
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 284, 314, 383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 592
Bse118I	RCCGGY	1 cut(s)	185
BseBI	CCWGG	4 cut(s)	304, 536, 664, 692
BseDI	CCNNGG	3 cut(s)	472, 534, 535
BseGI	GGATG	1 cut(s)	850
BseLI	CCNNNNNNNGG	2 cut(s)	243, 592
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	83, 97
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	775
BseYI	CCCAGC	2 cut(s)	330, 585
BsgI	GTGCAG	2 cut(s)	530, 629
Bsh1236I	CGCG	2 cut(s)	771, 858
BsiHKAI	GWGCWC	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	553
BsiSI	CCGG	4 cut(s)	186, 255, 423, 472
BslFI	GGGAC	2 cut(s)	174, 260
BslI	CCNNNNNNNGG	2 cut(s)	243, 592
BsmAI	GTCTC	3 cut(s)	304, 344, 453
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	2 cut(s)	174, 260
Bso31I	GGTCTC	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	649, 867, 874
BspACI	CCGC	6 cut(s)	97, 243, 385, 389, 771, 774
BspCNI	CTCAG	1 cut(s)	122
BspFNI	CGCG	2 cut(s)	771, 858
BspLI	GGNNCC	2 cut(s)	190, 259
BspMI	ACCTGC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	3 cut(s)	472, 534, 535
BssMI	GATC	3 cut(s)	649, 867, 874
BssNAI	GTATAC	1 cut(s)	205
BssNI	GRCGYC	3 cut(s)	294, 426, 777
Bst1107I	GTATAC	1 cut(s)	205
Bst2UI	CCWGG	4 cut(s)	304, 536, 664, 692
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	659
BstACI	GRCGYC	3 cut(s)	294, 426, 777
BstC8I	GCNNGC	2 cut(s)	387, 644
BstDEI	CTNAG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	850
BstFNI	CGCG	2 cut(s)	771, 858
BstHHI	GCGC	1 cut(s)	858
BstKTI	GATC	3 cut(s)	652, 870, 877
BstMAI	GTCTC	3 cut(s)	304, 344, 453
BstMBI	GATC	3 cut(s)	649, 867, 874
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	4 cut(s)	304, 536, 664, 692
BstSCI	CCNGG	6 cut(s)	253, 302, 471, 534, 662, 690
BstSLI	GKGCMC	1 cut(s)	414
BstUI	CGCG	2 cut(s)	771, 858
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	3 cut(s)	421, 711, 717
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BstZ17I	GTATAC	1 cut(s)	205
BtgZI	GCGATG	3 cut(s)	193, 750, 752
BtrI	CACGTC	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	850
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	387, 644
CfoI	GCGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	5 cut(s)	142, 188, 257, 660, 888
CseI	GACGC	2 cut(s)	415, 766
Csp6I	GTAC	4 cut(s)	500, 529, 573, 613
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	9 cut(s)	113, 185, 324, 347, 370, 379, 642, 788, 906
CviKI_1	RGCY	9 cut(s)	113, 185, 324, 347, 370, 379, 642, 788, 906
CviQI	GTAC	4 cut(s)	500, 529, 573, 613
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	3 cut(s)	651, 869, 876
DpnII	GATC	3 cut(s)	649, 867, 874
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
EciI	GGCGGA	1 cut(s)	404
Eco31I	GGTCTC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	812
Eco47I	GGWCC	5 cut(s)	142, 188, 257, 660, 888
Eco88I	CYCGRG	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	4 cut(s)	302, 534, 662, 690
EcoRV	GATATC	1 cut(s)	812
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	1 cut(s)	385
FaiI	YATR	3 cut(s)	194, 205, 383
FaqI	GGGAC	2 cut(s)	174, 260
FatI	CATG	1 cut(s)	381
FauI	CCCGC	2 cut(s)	236, 378
FblI	GTMKAC	2 cut(s)	204, 696
Fnu4HI	GCNGC	3 cut(s)	772, 775, 789
FokI	GGATG	1 cut(s)	857
Fsp4HI	GCNGC	3 cut(s)	772, 775, 789
GlaI	GCGC	1 cut(s)	857
GluI	GCNGC	3 cut(s)	772, 775, 789
GsaI	CCCAGC	2 cut(s)	334, 589
HapII	CCGG	4 cut(s)	186, 255, 423, 472
HgaI	GACGC	2 cut(s)	415, 766
HhaI	GCGC	1 cut(s)	858
Hin1I	GRCGYC	3 cut(s)	294, 426, 777
Hin1II	CATG	1 cut(s)	385
Hin6I	GCGC	1 cut(s)	856
HinP1I	GCGC	1 cut(s)	856
HincII	GTYRAC	2 cut(s)	226, 440
HindII	GTYRAC	2 cut(s)	226, 440
HinfI	GANTC	2 cut(s)	802, 824
HpaII	CCGG	4 cut(s)	186, 255, 423, 472
HphI	GGTGA	3 cut(s)	121, 307, 754
Hpy166II	GTNNAC	8 cut(s)	166, 205, 226, 412, 440, 531, 573, 697
Hpy188I	TCNGA	5 cut(s)	286, 344, 807, 829, 892
Hpy188III	TCNNGA	1 cut(s)	815
Hpy8I	GTNNAC	8 cut(s)	166, 205, 226, 412, 440, 531, 573, 697
Hpy99I	CGWCG	4 cut(s)	224, 299, 509, 782
HpyAV	CCTTC	2 cut(s)	96, 812
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	3 cut(s)	294, 396, 507
HpyCH4V	TGCA	6 cut(s)	6, 412, 547, 610, 630, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	3 cut(s)	294, 396, 507
Hsp92I	GRCGYC	3 cut(s)	294, 426, 777
Hsp92II	CATG	1 cut(s)	385
HspAI	GCGC	1 cut(s)	856
Kzo9I	GATC	3 cut(s)	649, 867, 874
LmnI	GCTCC	1 cut(s)	898
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	2 cut(s)	265, 709
MaeII	ACGT	3 cut(s)	294, 396, 507
MaeIII	GTNAC	2 cut(s)	508, 557
MalI	GATC	3 cut(s)	651, 869, 876
MboI	GATC	3 cut(s)	649, 867, 874
MboII	GAAGA	4 cut(s)	421, 646, 716, 722
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	4 cut(s)	45, 125, 831, 851
MmeI	TCCRAC	1 cut(s)	465
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	2 cut(s)	48, 910
MspA1I	CMGCKG	2 cut(s)	113, 788
MspI	CCGG	4 cut(s)	186, 255, 423, 472
MspR9I	CCNGG	6 cut(s)	255, 304, 473, 536, 664, 692
MvaI	CCWGG	4 cut(s)	304, 536, 664, 692
MvnI	CGCG	2 cut(s)	771, 858
MwoI	GCNNNNNNNGC	1 cut(s)	376
NciI	CCSGG	2 cut(s)	255, 473
NdeII	GATC	3 cut(s)	649, 867, 874
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	2 cut(s)	190, 259
NmuCI	GTSAC	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	140
PasI	CCCWGGG	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 811
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	802, 824
PflFI	GACNNNGTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	592
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	773, 776, 790
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	4 cut(s)	302, 534, 662, 690
PspFI	CCCAGC	2 cut(s)	330, 585
PspGI	CCWGG	4 cut(s)	302, 534, 662, 690
PspN4I	GGNNCC	2 cut(s)	190, 259
PspPI	GGNCC	5 cut(s)	142, 188, 257, 660, 888
PspPPI	RGGWCCY	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	874
PsyI	GACNNNGTC	1 cut(s)	296
PvuII	CAGCTG	2 cut(s)	113, 788
RsaI	GTAC	4 cut(s)	501, 530, 574, 614
RsaNI	GTAC	4 cut(s)	500, 529, 573, 613
SaqAI	TTAA	2 cut(s)	48, 910
SatI	GCNGC	3 cut(s)	772, 775, 789
Sau3AI	GATC	3 cut(s)	649, 867, 874
Sau96I	GGNCC	5 cut(s)	142, 188, 257, 660, 888
ScrFI	CCNGG	6 cut(s)	255, 304, 473, 536, 664, 692
SduI	GDGCHC	1 cut(s)	414
SfaNI	GCATC	2 cut(s)	265, 709
SinI	GGWCC	5 cut(s)	142, 188, 257, 660, 888
Sse9I	AATT	4 cut(s)	45, 125, 831, 851
SsiI	CCGC	6 cut(s)	97, 243, 385, 389, 771, 774
StyD4I	CCNGG	6 cut(s)	253, 302, 471, 534, 662, 690
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	3 cut(s)	297, 399, 510
TaqI	TCGA	5 cut(s)	366, 480, 648, 800, 814
TasI	AATT	4 cut(s)	45, 125, 831, 851
TauI	GCSGC	2 cut(s)	774, 777
TfiI	GAWTC	2 cut(s)	802, 824
Tru1I	TTAA	2 cut(s)	48, 910
Tru9I	TTAA	2 cut(s)	48, 910
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	1 cut(s)	788
Tsp45I	GTSAC	1 cut(s)	508
Tth111I	GACNNNGTC	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	592
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	5 cut(s)	142, 188, 257, 660, 888
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	2 cut(s)	204, 696
XmnI	GAANNNNTTC	1 cut(s)	398
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.