MD06G1160700.v1.1

Peptide methionine sulfoxide reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010798
Physical Location & Seq
Forward (+)
30196820 .. 30206164
9345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1160700.v1.1.491

Sequence Viewer

Length: 672 bp
ATGGCTGGCTATATTCAACTACCACACCTCTTCATAACGTTCCACCCACTCCCATTCCTCCACAAAATTCAATCAGCACGAATAATGGCCGCCGCTTCCGATAATTCCGCCGTCAACAACCCGGCTCTGGGACCGGACTCGGATACTCCGGACAATCCGGGACACGAGTTCGCTCAATTCGGATCCGGGTGCTGCTGGGGAGCAGAGCTGAGGTTCCAGCGAGTGGTAGGGGTGGTGAAGACCGAGGTCGGGTACTCCCAGGGCCACGCGGACGATCCCAATTACAAATTGGTGTGCACCGGAACCACGAACCATGCGGAGGTGGTTCGGGTCCAGTTTGACCCGGAAGTCTGCCCCTACAAGGATCTGCTCTCTGTGTTTTGGGATCGCCATGATCCAACGACGCTCAATCGCCAGGGAGGAGATGTTGGCACACAATACCGATCCGGAATCTACTACTACAACGAAAACCAGGCTCGGCTGGCCGAGGAATCGAAGGAAGCTAAGCAGGCGGAGTTGAAGGATAAGAAGGTGGTGACGGAGATCCTCCCGGCAAAGAAATATTACAGGGCGGAGGAATACCATCAACAGTATCTCGAAAAAGGAGGAGGTAAAGGCAACAAACAATCTGCCGAGAAGGGTTGCACTGATCCTATCAGATGCTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

224

Amino Acids

24.92

Weight (kDa)

6.24

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 58 - 202 7.2e-58 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccB7I CCANNNNNTGG 1 cut(s) 223
AccII CGCG 1 cut(s) 269
AccIII TCCGGA 2 cut(s) 148, 446
AciI CCGC 7 cut(s) 90, 93, 108, 269, 317, 512, 572
AclI AACGTT 1 cut(s) 38
AclWI GGATC 9 cut(s) 177, 190, 269, 372, 389, 393, 438, 538, 644
AcoI YGGCCR 2 cut(s) 87, 483
AcsI RAATTY 1 cut(s) 66
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 6 cut(s) 127, 128, 223, 249, 319, 361
AgsI TTSAA 3 cut(s) 17, 71, 520
AjnI CCWGG 3 cut(s) 258, 414, 471
AluBI AGCT 2 cut(s) 208, 503
AluI AGCT 2 cut(s) 208, 503
Alw21I GWGCWC 1 cut(s) 299
Alw44I GTGCAC 1 cut(s) 295
AlwI GGATC 9 cut(s) 177, 190, 269, 372, 389, 393, 438, 538, 644
Aor13HI TCCGGA 2 cut(s) 148, 446
AoxI GGCC 3 cut(s) 87, 262, 483
ApaLI GTGCAC 1 cut(s) 295
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 66
AspS9I GGNCC 3 cut(s) 131, 262, 331
AsuC2I CCSGG 5 cut(s) 122, 159, 187, 344, 551
AsuHPI GGTGA 2 cut(s) 247, 547
AvaII GGWCC 2 cut(s) 131, 331
BaeGI GKGCMC 1 cut(s) 299
BamHI GGATCC 1 cut(s) 182
BauI CACGAG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 299
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 591
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 3 cut(s) 260, 416, 473
BciVI GTATCC 1 cut(s) 136
BcnI CCSGG 5 cut(s) 122, 159, 187, 344, 551
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 3 cut(s) 90, 93, 193
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 3 cut(s) 91, 94, 194
Bme1390I CCNGG 8 cut(s) 122, 159, 187, 260, 344, 416, 473, 551
Bme18I GGWCC 2 cut(s) 131, 331
BmgT120I GGNCC 3 cut(s) 131, 262, 331
BmiI GGNNCC 5 cut(s) 132, 184, 215, 304, 332
BmrFI CCNGG 8 cut(s) 122, 159, 187, 260, 344, 416, 473, 551
BmsI GCATC 1 cut(s) 650
BoxI GACNNNNGTC 1 cut(s) 245
BpiI GAAGAC 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 504
BpuMI CCSGG 5 cut(s) 122, 159, 187, 344, 551
BsaJI CCNNGG 5 cut(s) 243, 258, 259, 415, 486
BsaWI WCCGGW 4 cut(s) 133, 148, 299, 446
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 6 cut(s) 127, 128, 223, 249, 319, 361
Bse1I ACTGG 1 cut(s) 334
BseAI TCCGGA 2 cut(s) 148, 446
BseBI CCWGG 3 cut(s) 260, 416, 473
BseDI CCNNGG 5 cut(s) 243, 258, 259, 415, 486
BseLI CCNNNNNNNGG 6 cut(s) 127, 128, 223, 249, 319, 361
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 2 cut(s) 435, 621
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 1 cut(s) 179
BseYI CCCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 3 cut(s) 89, 264, 485
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 9 cut(s) 122, 134, 149, 158, 186, 300, 344, 447, 551
BslFI GGGAC 2 cut(s) 144, 174
BslI CCNNNNNNNGG 6 cut(s) 127, 128, 223, 249, 319, 361
BsmFI GGGAC 2 cut(s) 144, 174
BsnI GGCC 3 cut(s) 89, 264, 485
Bsp1286I GDGCHC 1 cut(s) 299
Bsp13I TCCGGA 2 cut(s) 148, 446
Bsp143I GATC 8 cut(s) 182, 274, 364, 385, 394, 443, 543, 649
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 7 cut(s) 90, 93, 108, 269, 317, 512, 572
BspANI GGCC 3 cut(s) 89, 264, 485
BspCNI CTCAG 1 cut(s) 201
BspEI TCCGGA 2 cut(s) 148, 446
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 5 cut(s) 132, 184, 215, 304, 332
BspPI GGATC 9 cut(s) 177, 190, 269, 372, 389, 393, 438, 538, 644
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 5 cut(s) 243, 258, 259, 415, 486
BssMI GATC 8 cut(s) 182, 274, 364, 385, 394, 443, 543, 649
BssSI CACGAG 1 cut(s) 164
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 3 cut(s) 260, 416, 473
Bst4CI ACNGT 1 cut(s) 591
Bst6I CTCTTC 1 cut(s) 35
BstC8I GCNNGC 3 cut(s) 7, 483, 510
BstDEI CTNAG 2 cut(s) 209, 504
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 8 cut(s) 185, 277, 367, 388, 397, 446, 546, 652
BstMBI GATC 8 cut(s) 182, 274, 364, 385, 394, 443, 543, 649
BstMWI GCNNNNNNNGC 2 cut(s) 482, 509
BstNI CCWGG 3 cut(s) 260, 416, 473
BstPAI GACNNNNGTC 1 cut(s) 245
BstSCI CCNGG 8 cut(s) 120, 157, 185, 258, 342, 414, 471, 549
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 3 cut(s) 182, 364, 543
BstYI RGATCY 3 cut(s) 182, 364, 543
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 3 cut(s) 89, 264, 485
BtsIMutI CAGTG 1 cut(s) 645
Cac8I GCNNGC 3 cut(s) 7, 483, 510
Cfr13I GGNCC 3 cut(s) 131, 262, 331
CseI GACGC 1 cut(s) 412
Csp6I GTAC 1 cut(s) 253
CviAII CATG 2 cut(s) 314, 392
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 2 cut(s) 209, 504
DpnI GATC 8 cut(s) 184, 276, 366, 387, 396, 445, 545, 651
DpnII GATC 8 cut(s) 182, 274, 364, 385, 394, 443, 543, 649
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 2 cut(s) 87, 483
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
EciI GGCGGA 3 cut(s) 97, 527, 587
Eco47I GGWCC 2 cut(s) 131, 331
EcoRII CCWGG 3 cut(s) 258, 414, 471
FaeI CATG 2 cut(s) 317, 395
FaiI YATR 5 cut(s) 12, 35, 315, 393, 666
FaqI GGGAC 2 cut(s) 144, 174
FatI CATG 2 cut(s) 313, 391
Fnu4HI GCNGC 3 cut(s) 90, 93, 193
Fsp4HI GCNGC 3 cut(s) 90, 93, 193
GluI GCNGC 3 cut(s) 90, 93, 193
GsaI CCCAGC 1 cut(s) 199
HaeIII GGCC 3 cut(s) 89, 264, 485
HapII CCGG 9 cut(s) 122, 134, 149, 158, 186, 300, 344, 447, 551
HgaI GACGC 1 cut(s) 412
Hin1II CATG 2 cut(s) 317, 395
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 3 cut(s) 137, 450, 491
HpaII CCGG 9 cut(s) 122, 134, 149, 158, 186, 300, 344, 447, 551
HphI GGTGA 2 cut(s) 247, 547
Hpy166II GTNNAC 2 cut(s) 115, 297
Hpy188I TCNGA 4 cut(s) 100, 142, 182, 659
Hpy188III TCNNGA 3 cut(s) 149, 447, 596
Hpy8I GTNNAC 2 cut(s) 115, 297
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 4 cut(s) 490, 514, 523, 631
HpyCH4III ACNGT 1 cut(s) 591
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 297, 645
HpyF10VI GCNNNNNNNGC 2 cut(s) 482, 509
HpyF3I CTNAG 2 cut(s) 209, 504
HpySE526I ACGT 1 cut(s) 38
Hsp92II CATG 2 cut(s) 317, 395
Kpn2I TCCGGA 2 cut(s) 148, 446
Kzo9I GATC 8 cut(s) 182, 274, 364, 385, 394, 443, 543, 649
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 650
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 535
MalI GATC 8 cut(s) 184, 276, 366, 387, 396, 445, 545, 651
MboI GATC 8 cut(s) 182, 274, 364, 385, 394, 443, 543, 649
MboII GAAGA 2 cut(s) 22, 250
MflI RGATCY 3 cut(s) 182, 364, 543
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 5 cut(s) 66, 103, 176, 280, 287
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 422
MroI TCCGGA 2 cut(s) 148, 446
MspI CCGG 9 cut(s) 122, 134, 149, 158, 186, 300, 344, 447, 551
MspR9I CCNGG 8 cut(s) 122, 159, 187, 260, 344, 416, 473, 551
MvaI CCWGG 3 cut(s) 260, 416, 473
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 482, 509
NciI CCSGG 5 cut(s) 122, 159, 187, 344, 551
NdeII GATC 8 cut(s) 182, 274, 364, 385, 394, 443, 543, 649
NlaIII CATG 2 cut(s) 317, 395
NlaIV GGNNCC 5 cut(s) 132, 184, 215, 304, 332
NmeAIII GCCGAG 3 cut(s) 457, 511, 658
NmuCI GTSAC 1 cut(s) 535
PasI CCCWGGG 1 cut(s) 259
PfeI GAWTC 2 cut(s) 450, 491
PflMI CCANNNNNTGG 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 3 cut(s) 91, 94, 194
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PshAI GACNNNNGTC 1 cut(s) 245
Psp1406I AACGTT 1 cut(s) 38
Psp6I CCWGG 3 cut(s) 258, 414, 471
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 3 cut(s) 258, 414, 471
PspN4I GGNNCC 5 cut(s) 132, 184, 215, 304, 332
PspPI GGNCC 3 cut(s) 131, 262, 331
PsuI RGATCY 3 cut(s) 182, 364, 543
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SatI GCNGC 3 cut(s) 90, 93, 193
Sau3AI GATC 8 cut(s) 182, 274, 364, 385, 394, 443, 543, 649
Sau96I GGNCC 3 cut(s) 131, 262, 331
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 8 cut(s) 122, 159, 187, 260, 344, 416, 473, 551
SduI GDGCHC 1 cut(s) 299
SetI ASST 9 cut(s) 30, 41, 210, 215, 249, 324, 505, 534, 613
SfaNI GCATC 1 cut(s) 650
SinI GGWCC 2 cut(s) 131, 331
Sse9I AATT 5 cut(s) 66, 103, 176, 280, 287
SsiI CCGC 7 cut(s) 90, 93, 108, 269, 317, 512, 572
SspI AATATT 1 cut(s) 563
StyD4I CCNGG 8 cut(s) 120, 157, 185, 258, 342, 414, 471, 549
TaaI ACNGT 1 cut(s) 591
TaiI ACGT 1 cut(s) 41
TaqI TCGA 2 cut(s) 494, 597
TaqII GACCGA 1 cut(s) 257
TasI AATT 5 cut(s) 66, 103, 176, 280, 287
TauI GCSGC 2 cut(s) 92, 95
TfiI GAWTC 2 cut(s) 450, 491
TscAI CASTG 1 cut(s) 652
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 1 cut(s) 22
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 223
VneI GTGCAC 1 cut(s) 295
VpaK11BI GGWCC 2 cut(s) 131, 331
XapI RAATTY 1 cut(s) 66
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.