Rh7BG123000

Peptide methionine sulfoxide reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0010798
Physical Location & Seq
Reverse (-)
9125390 .. 9126977
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG123000.1

Sequence Viewer

Length: 570 bp
ATGGCTTCCACTACCAACCCAGCTCTCGACCCAGATTCGGACATTCCGGATAACCCGGGTCACGAGTTTGCTCAATTCGGGTCGGGTTGCTTCTGGGGAGCCGAGCTCAGGTTTCAGCGGGTTGTCGGCGTGGTCAAGACCGAGGTTGGGTACTCCCAGGGCCACATCCATGACCCGAATTACAAGCTGGTCTGCTCCGGAACCACTAACCACTCCGAGGTGGTTCGGGTCCAGTTCGACCCGCAAGTCTGCCCATATTCGGACCTGCTTTCCGTCTTTTGGTCTCGTCATGATCCAACTACCCTCAATCGCCAGGGTGGAGATGTGGGAACTCAATATCGATCTGGAATATACTACTACAACGAAACGCAGGCTCGCCTAGCCGAGGAATCGAAGGAAGCAAAGCAAAAGGAGTTTAAGGACAAGAGGGTGGTGACAGAGATTCTTCCAGCAAAGAGGTTTTACAGGGCAGAGGAATACCATCAGCAATATCTGGAAAAAGGAGGAGGTAATGGCAACAAACAATCTGCTCAAAAGGGTTGCAATGATCCTATTCAATGCTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

189

Amino Acids

21.31

Weight (kDa)

6.07

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 24 - 168 4e-59 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 273
AccIII TCCGGA 2 cut(s) 46, 197
AciI CCGC 2 cut(s) 118, 242
AclWI GGATC 2 cut(s) 287, 542
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 7 cut(s) 37, 108, 147, 217, 259, 279, 385
AgsI TTSAA 1 cut(s) 557
AjnI CCWGG 2 cut(s) 156, 312
AluBI AGCT 3 cut(s) 23, 106, 187
AluI AGCT 3 cut(s) 23, 106, 187
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 2 cut(s) 287, 542
Ama87I CYCGRG 1 cut(s) 55
Aor13HI TCCGGA 2 cut(s) 46, 197
AoxI GGCC 1 cut(s) 160
AspS9I GGNCC 3 cut(s) 160, 229, 262
AsuC2I CCSGG 2 cut(s) 56, 57
AsuHPI GGTGA 1 cut(s) 445
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 2 cut(s) 229, 262
BanII GRGCYC 1 cut(s) 108
BauI CACGAG 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 108
BccI CCATC 1 cut(s) 489
BciT130I CCWGG 2 cut(s) 158, 314
BcnI CCSGG 2 cut(s) 56, 57
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 273
Bme1390I CCNGG 4 cut(s) 56, 57, 158, 314
Bme18I GGWCC 2 cut(s) 229, 262
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 3 cut(s) 160, 229, 262
BmiI GGNNCC 3 cut(s) 100, 202, 230
BmrFI CCNGG 4 cut(s) 56, 57, 158, 314
BplI GAGNNNNNCTC 2 cut(s) 90, 122
Bpu10I CCTNAGC 1 cut(s) 107
BpuMI CCSGG 2 cut(s) 56, 57
Bsa29I ATCGAT 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 7 cut(s) 55, 141, 156, 157, 216, 313, 384
BsaWI WCCGGW 2 cut(s) 46, 197
Bsc4I CCNNNNNNNGG 7 cut(s) 37, 108, 147, 217, 259, 279, 385
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 550
BseAI TCCGGA 2 cut(s) 46, 197
BseBI CCWGG 2 cut(s) 158, 314
BseCI ATCGAT 1 cut(s) 340
BseDI CCNNGG 7 cut(s) 55, 141, 156, 157, 216, 313, 384
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 7 cut(s) 37, 108, 147, 217, 259, 279, 385
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 519
BseYI CCCAGC 1 cut(s) 19
BshFI GGCC 1 cut(s) 162
BshVI ATCGAT 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 108
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 47, 56, 198
BslI CCNNNNNNNGG 7 cut(s) 37, 108, 147, 217, 259, 279, 385
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 288
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 108
Bsp13I TCCGGA 2 cut(s) 46, 197
Bsp143I GATC 3 cut(s) 292, 341, 547
BspACI CCGC 2 cut(s) 118, 242
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 1 cut(s) 120
BspDI ATCGAT 1 cut(s) 340
BspEI TCCGGA 2 cut(s) 46, 197
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 100, 202, 230
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 2 cut(s) 287, 542
BspTNI GGTCTC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 550
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 7 cut(s) 55, 141, 156, 157, 216, 313, 384
BssMI GATC 3 cut(s) 292, 341, 547
BssSI CACGAG 1 cut(s) 62
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 158, 314
BstC8I GCNNGC 2 cut(s) 372, 376
BstDEI CTNAG 1 cut(s) 107
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 1 cut(s) 165
BstKTI GATC 3 cut(s) 295, 344, 550
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 3 cut(s) 292, 341, 547
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 2 cut(s) 158, 314
BstSCI CCNGG 4 cut(s) 54, 55, 156, 312
Bsu15I ATCGAT 1 cut(s) 340
BsuRI GGCC 1 cut(s) 162
BsuTUI ATCGAT 1 cut(s) 340
BtsCI GGATG 1 cut(s) 165
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 372, 376
CciI TCATGA 1 cut(s) 289
Cfr13I GGNCC 3 cut(s) 160, 229, 262
Cfr9I CCCGGG 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 340
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 170, 290
CviJI RGCY 8 cut(s) 5, 23, 101, 106, 162, 187, 374, 383
CviKI_1 RGCY 8 cut(s) 5, 23, 101, 106, 162, 187, 374, 383
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 1 cut(s) 107
DpnI GATC 3 cut(s) 294, 343, 549
DpnII GATC 3 cut(s) 292, 341, 547
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 229, 262
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 156, 312
EcoT38I GRGCYC 1 cut(s) 108
FaeI CATG 2 cut(s) 173, 293
FaiI YATR 5 cut(s) 171, 256, 291, 352, 564
FatI CATG 2 cut(s) 169, 289
FauI CCCGC 2 cut(s) 111, 249
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 108
FspBI CTAG 1 cut(s) 380
GsaI CCCAGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 162
HapII CCGG 3 cut(s) 47, 56, 198
Hin1II CATG 2 cut(s) 173, 293
HinfI GANTC 3 cut(s) 35, 389, 442
HpaII CCGG 3 cut(s) 47, 56, 198
HphI GGTGA 1 cut(s) 445
Hpy188I TCNGA 3 cut(s) 40, 217, 262
Hpy188III TCNNGA 8 cut(s) 26, 47, 62, 136, 198, 290, 345, 494
HpyAV CCTTC 1 cut(s) 388
HpyCH4V TGCA 1 cut(s) 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 2 cut(s) 173, 293
Kpn2I TCCGGA 2 cut(s) 46, 197
Kzo9I GATC 3 cut(s) 292, 341, 547
LmnI GCTCC 2 cut(s) 98, 200
MaeI CTAG 1 cut(s) 380
MaeIII GTNAC 2 cut(s) 59, 433
MalI GATC 3 cut(s) 294, 343, 549
MboI GATC 3 cut(s) 292, 341, 547
MboII GAAGA 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 2 cut(s) 74, 178
MmeI TCCRAC 1 cut(s) 320
MnlI CCTC 9 cut(s) 136, 211, 314, 379, 420, 450, 466, 497, 500
MroI TCCGGA 2 cut(s) 46, 197
MseI TTAA 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 3 cut(s) 47, 56, 198
MspR9I CCNGG 4 cut(s) 56, 57, 158, 314
MvaI CCWGG 2 cut(s) 158, 314
MwoI GCNNNNNNNGC 1 cut(s) 380
NciI CCSGG 2 cut(s) 56, 57
NdeII GATC 3 cut(s) 292, 341, 547
NlaIII CATG 2 cut(s) 173, 293
NlaIV GGNNCC 3 cut(s) 100, 202, 230
NmeAIII GCCGAG 2 cut(s) 127, 409
NmuCI GTSAC 2 cut(s) 59, 433
PagI TCATGA 1 cut(s) 289
PasI CCCWGGG 1 cut(s) 157
PfeI GAWTC 3 cut(s) 35, 389, 442
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 156, 312
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 2 cut(s) 156, 312
PspN4I GGNNCC 3 cut(s) 100, 202, 230
PspPI GGNCC 3 cut(s) 160, 229, 262
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 168
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 417
Sau3AI GATC 3 cut(s) 292, 341, 547
Sau96I GGNCC 3 cut(s) 160, 229, 262
ScrFI CCNGG 4 cut(s) 56, 57, 158, 314
SduI GDGCHC 1 cut(s) 108
SetI ASST 9 cut(s) 25, 108, 113, 147, 189, 222, 267, 461, 511
SinI GGWCC 2 cut(s) 229, 262
SmaI CCCGGG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 2 cut(s) 74, 178
SsiI CCGC 2 cut(s) 118, 242
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 4 cut(s) 54, 55, 156, 312
TaqI TCGA 4 cut(s) 27, 237, 340, 392
TaqII GACCGA 1 cut(s) 155
TasI AATT 2 cut(s) 74, 178
TfiI GAWTC 3 cut(s) 35, 389, 442
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 2 cut(s) 59, 433
Tsp45I GTSAC 2 cut(s) 59, 433
TspGWI ACGGA 1 cut(s) 262
TspMI CCCGGG 1 cut(s) 55
VpaK11BI GGWCC 2 cut(s) 229, 262
XagI CCTNNNNNAGG 1 cut(s) 383
XmaI CCCGGG 1 cut(s) 55
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.