Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010798

Physical Location & Seq

Genomic Coordinates Reverse (-)

14170099 .. 14171653

Gene Structure 1555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G161000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCCGCTACTTCAGAAAAGACGGGACCCGCCAACCCTGCTCTGTTACCGGACCTCGATGCTCCGGACAATCCGGGTCACGAGTTCGCTCAATTCGGATCCGGGTGCTTCTGGGGAGCGGAGCTGAGGTTCCAGCGAGTGGTCGGGGTGGTCAAGACCGAAGTCGGCTACTCCCAGGGCCACGTGGAGGATCCGAATTACAAATTGGTTTGCTCCGGAACCACCAACCACGCGGAGGTGGTTCGGGTCCAGTTTGACCCGGAAGTCTGCCCTTACACTGATCTGCTCTCTGTCTTTTGGGCTCGTCATGATCCAACGACGCTCAATCGCCAGGGTGGTGATGTTGGTACACAATATCGATCTGGAATATATTACTACAATGAAAACCAGGCTCGTCTGGCCCAGAAATCAAAGGAGGCAAAGCAAGTGGAGTTGAAGGATAAGAAGGTGGTGACTGAGATTCTGCCAGCAAAGAGGTTTTACAGGGCAGAGGAGTATCATCAGCAATATCTGGAAAAGGGAGGAGGTCAAGGCAACAAACAATCTGCTGAAAAGGGTTGCACGGATCCTATTAGGTGCTATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

196

Amino Acids

21.75

Weight (kDa)

6.22

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25130
fragaria_vesca	FvH4_5g06741 FvH4_5g06742
malus_domestica	MD01G1182900.v1.1 MD04G1132300.v1.1 MD06G1160700.v1.1 MD06G1160900.v1.1 MD14G1166700.v1.1
prunus_persica	Prupe.5G161000_v2.0.a1
pyrus_communis	pycom06g14370 pycom14g13930
rosa_chinensis	RchiOBHm_Chr7g0191801
rosa_laevigata	RLG00000004422
rosa_roxburghii	Rroxscaffold_3G00263510
rosa_rugosa	Rorug06G0511500
rosa_samantha	Rh7AG121600 Rh7BG123000 Rh7CG125900 Rh7DG124700
rosa_wichuraiana	Rw7G010340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccBSI	CCGCTC	1 cut(s)	119
AccII	CGCG	1 cut(s)	233
AccIII	TCCGGA	2 cut(s)	64, 215
AciI	CCGC	4 cut(s)	6, 30, 119, 233
AclWI	GGATC	7 cut(s)	93, 106, 185, 198, 305, 560, 573
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	139, 187, 235
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	3 cut(s)	174, 330, 387
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	124
AluI	AGCT	1 cut(s)	124
AlwI	GGATC	7 cut(s)	93, 106, 185, 198, 305, 560, 573
Aor13HI	TCCGGA	2 cut(s)	64, 215
AoxI	GGCC	3 cut(s)	3, 178, 399
AspS9I	GGNCC	5 cut(s)	26, 52, 178, 247, 400
AsuC2I	CCSGG	3 cut(s)	75, 103, 260
AsuHPI	GGTGA	2 cut(s)	350, 463
AvaII	GGWCC	3 cut(s)	26, 52, 247
BamHI	GGATCC	3 cut(s)	98, 190, 565
BanII	GRGCYC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	125
BciT130I	CCWGG	3 cut(s)	176, 332, 389
BcnI	CCSGG	3 cut(s)	75, 103, 260
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	6 cut(s)	75, 103, 176, 260, 332, 389
Bme18I	GGWCC	3 cut(s)	26, 52, 247
BmgT120I	GGNCC	5 cut(s)	26, 52, 178, 247, 400
BmiI	GGNNCC	8 cut(s)	27, 28, 100, 131, 192, 220, 248, 567
BmrFI	CCNGG	6 cut(s)	75, 103, 176, 260, 332, 389
BmsI	GCATC	1 cut(s)	49
BoxI	GACNNNNGTC	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	125
BpuMI	CCSGG	3 cut(s)	75, 103, 260
Bsa29I	ATCGAT	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	184
BsaJI	CCNNGG	3 cut(s)	174, 175, 331
BsaWI	WCCGGW	3 cut(s)	49, 64, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 187, 235
Bse1I	ACTGG	1 cut(s)	250
BseAI	TCCGGA	2 cut(s)	64, 215
BseBI	CCWGG	3 cut(s)	176, 332, 389
BseCI	ATCGAT	1 cut(s)	358
BseDI	CCNNGG	3 cut(s)	174, 175, 331
BseLI	CCNNNNNNNGG	3 cut(s)	139, 187, 235
BseMII	CTCAG	2 cut(s)	116, 447
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	2 cut(s)	506, 537
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	3 cut(s)	5, 180, 401
BshVI	ATCGAT	1 cut(s)	358
BsiSI	CCGG	6 cut(s)	50, 65, 74, 102, 216, 260
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	139, 187, 235
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	5, 180, 401
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp13I	TCCGGA	2 cut(s)	64, 215
Bsp143I	GATC	6 cut(s)	98, 190, 280, 310, 359, 565
BspACI	CCGC	4 cut(s)	6, 30, 119, 233
BspANI	GGCC	3 cut(s)	5, 180, 401
BspCNI	CTCAG	2 cut(s)	117, 448
BspDI	ATCGAT	1 cut(s)	358
BspEI	TCCGGA	2 cut(s)	64, 215
BspFNI	CGCG	1 cut(s)	233
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	8 cut(s)	27, 28, 100, 131, 192, 220, 248, 567
BspPI	GGATC	7 cut(s)	93, 106, 185, 198, 305, 560, 573
BsrBI	CCGCTC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	3 cut(s)	174, 175, 331
BssMI	GATC	6 cut(s)	98, 190, 280, 310, 359, 565
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	3 cut(s)	176, 332, 389
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	125, 456
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	6 cut(s)	101, 193, 283, 313, 362, 568
BstMBI	GATC	6 cut(s)	98, 190, 280, 310, 359, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 398
BstNI	CCWGG	3 cut(s)	176, 332, 389
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	6 cut(s)	73, 101, 174, 258, 330, 387
BstUI	CGCG	1 cut(s)	233
BstX2I	RGATCY	3 cut(s)	98, 190, 565
BstYI	RGATCY	3 cut(s)	98, 190, 565
Bsu15I	ATCGAT	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	5, 180, 401
BsuTUI	ATCGAT	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	468
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	5 cut(s)	26, 52, 178, 247, 400
ClaI	ATCGAT	1 cut(s)	358
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	348
CspCI	CAANNNNNGTGG	2 cut(s)	408, 443
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	7 cut(s)	5, 124, 168, 180, 302, 392, 401
CviKI_1	RGCY	7 cut(s)	5, 124, 168, 180, 302, 392, 401
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	2 cut(s)	125, 456
DpnI	GATC	6 cut(s)	100, 192, 282, 312, 361, 567
DpnII	GATC	6 cut(s)	98, 190, 280, 310, 359, 565
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	304
Eco47I	GGWCC	3 cut(s)	26, 52, 247
Eco72I	CACGTG	1 cut(s)	184
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	3 cut(s)	174, 330, 387
EcoT38I	GRGCYC	1 cut(s)	304
FaeI	CATG	1 cut(s)	311
FaiI	YATR	3 cut(s)	309, 370, 582
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	1 cut(s)	307
FauI	CCCGC	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	5, 180, 401
HapII	CCGG	6 cut(s)	50, 65, 74, 102, 216, 260
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	1 cut(s)	311
HinfI	GANTC	1 cut(s)	460
HpaII	CCGG	6 cut(s)	50, 65, 74, 102, 216, 260
HphI	GGTGA	2 cut(s)	350, 463
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	3 cut(s)	16, 98, 195
Hpy188III	TCNNGA	7 cut(s)	65, 80, 154, 216, 308, 363, 512
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	430, 439
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 398
HpyF3I	CTNAG	2 cut(s)	125, 456
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	311
KflI	GGGWCCC	1 cut(s)	26
Kpn2I	TCCGGA	2 cut(s)	64, 215
Kzo9I	GATC	6 cut(s)	98, 190, 280, 310, 359, 565
LmnI	GCTCC	4 cut(s)	67, 116, 121, 218
LweI	GCATC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	3 cut(s)	45, 77, 451
MalI	GATC	6 cut(s)	100, 192, 282, 312, 361, 567
MbiI	CCGCTC	1 cut(s)	119
MboI	GATC	6 cut(s)	98, 190, 280, 310, 359, 565
MflI	RGATCY	3 cut(s)	98, 190, 565
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	3 cut(s)	92, 196, 203
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	9 cut(s)	65, 120, 181, 229, 409, 468, 484, 515, 518
MroI	TCCGGA	2 cut(s)	64, 215
MspI	CCGG	6 cut(s)	50, 65, 74, 102, 216, 260
MspR9I	CCNGG	6 cut(s)	75, 103, 176, 260, 332, 389
MvaI	CCWGG	3 cut(s)	176, 332, 389
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	38, 398
NciI	CCSGG	3 cut(s)	75, 103, 260
NdeII	GATC	6 cut(s)	98, 190, 280, 310, 359, 565
NlaIII	CATG	1 cut(s)	311
NlaIV	GGNNCC	8 cut(s)	27, 28, 100, 131, 192, 220, 248, 567
NmuCI	GTSAC	2 cut(s)	77, 451
PagI	TCATGA	1 cut(s)	307
PasI	CCCWGGG	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	460
PflMI	CCANNNNNTGG	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	7
PmaCI	CACGTG	1 cut(s)	184
PmlI	CACGTG	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	26
PshAI	GACNNNNGTC	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	3 cut(s)	174, 330, 387
PspCI	CACGTG	1 cut(s)	184
PspGI	CCWGG	3 cut(s)	174, 330, 387
PspN4I	GGNNCC	8 cut(s)	27, 28, 100, 131, 192, 220, 248, 567
PspPI	GGNCC	5 cut(s)	26, 52, 178, 247, 400
PspPPI	RGGWCCY	1 cut(s)	26
PsuI	RGATCY	3 cut(s)	98, 190, 565
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	6 cut(s)	98, 190, 280, 310, 359, 565
Sau96I	GGNCC	5 cut(s)	26, 52, 178, 247, 400
ScrFI	CCNGG	6 cut(s)	75, 103, 176, 260, 332, 389
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	9 cut(s)	57, 126, 131, 186, 240, 450, 479, 529, 578
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	3 cut(s)	26, 52, 247
Sse9I	AATT	3 cut(s)	92, 196, 203
SsiI	CCGC	4 cut(s)	6, 30, 119, 233
StyD4I	CCNGG	6 cut(s)	73, 101, 174, 258, 330, 387
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	57, 358
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	3 cut(s)	92, 196, 203
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	460
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	2 cut(s)	77, 451
Tsp45I	GTSAC	2 cut(s)	77, 451
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	3 cut(s)	26, 52, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.