FvH4_5g06742

Peptide methionine sulfoxide reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0010798
Physical Location & Seq
Forward (+)
3983016 .. 3984583
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g06742.t1

Sequence Viewer

Length: 573 bp
ATGGCTTCTTCCCCCACGAACCCAGCTCAGGACCCAGATTCCGACACGCCTGATAATCCGGGTCACAAGTTCGCTCAATTCGGGTTGGGTTGCTTCTGGGGAGCCGAGCTCAGGCTTCAGCGGGTCGTCGGCGTGGTCAAGACCGAGGTCGGGTACTCCCAGGGCCACGTCCACGACCCGAATTACAGGCTGGTCTGCTCCGGAACCACCAACCACTCCGAAGTGGTTCGGGTCCAGTTCGATCCGCAAGTCTGCTCATATTCGGATCTTCTTTCCGTCTTTTGGTCTCGTCATGATCCAACTACCCTCAATCGTCAGGGTGGAGATGTAGGAACTCAGTATCGATCTGGGATATACTACTACAATGAAGAGCAGGCTCGTCTAGCCGAGGAATCCAAGGAAGCAAAGCAAAAGGAGTTTAAGGACAAGAGGGTGGTGACAGAGATTCTACCAGCAAAGAGGTTTTACAGGGCAGAGGAGTACCATCAGCAATATCTGGAAAAAGGAGGACGTAATGGCAATAAACAATCTGCTCAAAAGGGTTGTAATGATCCTATTAGATGCTATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

191

Amino Acids

21.54

Weight (kDa)

7.0

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 25 - 169 1.7e-59 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 2 cut(s) 121, 245
AclWI GGATC 4 cut(s) 236, 273, 290, 545
AcuI CTGAAG 1 cut(s) 101
AfaI GTAC 2 cut(s) 155, 482
AfiI CCNNNNNNNGG 4 cut(s) 28, 111, 150, 282
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 2 cut(s) 26, 109
AluI AGCT 2 cut(s) 26, 109
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 4 cut(s) 236, 273, 290, 545
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 225
AspS9I GGNCC 3 cut(s) 31, 163, 232
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 448
AvaII GGWCC 2 cut(s) 31, 232
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BccI CCATC 1 cut(s) 492
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 1 cut(s) 383
Bme1390I CCNGG 2 cut(s) 60, 161
Bme18I GGWCC 2 cut(s) 31, 232
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 31, 163, 232
BmiI GGNNCC 4 cut(s) 33, 103, 205, 233
BmrFI CCNGG 2 cut(s) 60, 161
BmsI GCATC 1 cut(s) 551
BoxI GACNNNNGTC 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 93, 125
Bpu10I CCTNAGC 2 cut(s) 27, 110
BpuMI CCSGG 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 343
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 5 cut(s) 144, 159, 160, 387, 396
BsaWI WCCGGW 1 cut(s) 200
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 111, 150, 282
Bse1I ACTGG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 343
BseDI CCNNGG 5 cut(s) 144, 159, 160, 387, 396
BseLI CCNNNNNNNGG 4 cut(s) 28, 111, 150, 282
BseMII CTCAG 3 cut(s) 41, 124, 350
BseNI ACTGG 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 491
BseYI CCCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 2 cut(s) 59, 201
BslI CCNNNNNNNGG 4 cut(s) 28, 111, 150, 282
BsmAI GTCTC 1 cut(s) 291
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 5 cut(s) 241, 265, 295, 344, 550
BspACI CCGC 2 cut(s) 121, 245
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 3 cut(s) 40, 123, 349
BspDI ATCGAT 1 cut(s) 343
BspEI TCCGGA 1 cut(s) 200
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 4 cut(s) 33, 103, 205, 233
BspPI GGATC 4 cut(s) 236, 273, 290, 545
BspQI GCTCTTC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 291
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 5 cut(s) 144, 159, 160, 387, 396
BssMI GATC 5 cut(s) 241, 265, 295, 344, 550
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 3 cut(s) 27, 110, 336
BstKTI GATC 5 cut(s) 244, 268, 298, 347, 553
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 5 cut(s) 241, 265, 295, 344, 550
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 161
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 58, 159
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 343
BsuRI GGCC 1 cut(s) 165
BsuTUI ATCGAT 1 cut(s) 343
BtrI CACGTC 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 375
CciI TCATGA 1 cut(s) 292
Cfr13I GGNCC 3 cut(s) 31, 163, 232
ClaI ATCGAT 1 cut(s) 343
Csp6I GTAC 2 cut(s) 154, 481
CviAII CATG 1 cut(s) 293
CviJI RGCY 9 cut(s) 5, 26, 104, 109, 115, 165, 190, 377, 386
CviKI_1 RGCY 9 cut(s) 5, 26, 104, 109, 115, 165, 190, 377, 386
CviQI GTAC 2 cut(s) 154, 481
DdeI CTNAG 3 cut(s) 27, 110, 336
DpnI GATC 5 cut(s) 243, 267, 297, 346, 552
DpnII GATC 5 cut(s) 241, 265, 295, 344, 550
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 31, 232
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 296
FaiI YATR 4 cut(s) 259, 294, 355, 567
FatI CATG 1 cut(s) 292
FauI CCCGC 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 111
FspBI CTAG 1 cut(s) 383
GsaI CCCAGC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 59, 201
Hin1II CATG 1 cut(s) 296
HinfI GANTC 3 cut(s) 38, 392, 445
HpaII CCGG 2 cut(s) 59, 201
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 3 cut(s) 43, 220, 265
Hpy188III TCNNGA 5 cut(s) 29, 139, 201, 293, 497
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 168, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpyF3I CTNAG 3 cut(s) 27, 110, 336
HpySE526I ACGT 2 cut(s) 168, 511
Hsp92II CATG 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 5 cut(s) 241, 265, 295, 344, 550
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 101, 203
LweI GCATC 1 cut(s) 551
MaeI CTAG 1 cut(s) 383
MaeII ACGT 2 cut(s) 168, 511
MaeIII GTNAC 2 cut(s) 62, 436
MalI GATC 5 cut(s) 243, 267, 297, 346, 552
MboI GATC 5 cut(s) 241, 265, 295, 344, 550
MboII GAAGA 2 cut(s) 260, 380
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 2 cut(s) 77, 181
MmeI TCCRAC 2 cut(s) 66, 323
MnlI CCTC 7 cut(s) 139, 317, 382, 423, 453, 469, 500
MroI TCCGGA 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 2 cut(s) 59, 201
MspR9I CCNGG 2 cut(s) 60, 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 1 cut(s) 60
NdeII GATC 5 cut(s) 241, 265, 295, 344, 550
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 4 cut(s) 33, 103, 205, 233
NmeAIII GCCGAG 2 cut(s) 130, 412
NmuCI GTSAC 2 cut(s) 62, 436
PagI TCATGA 1 cut(s) 292
PasI CCCWGGG 1 cut(s) 160
PciSI GCTCTTC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 3 cut(s) 38, 392, 445
PpuMI RGGWCCY 1 cut(s) 31
PshAI GACNNNNGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 4 cut(s) 33, 103, 205, 233
PspPI GGNCC 3 cut(s) 31, 163, 232
PspPPI RGGWCCY 1 cut(s) 31
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 2 cut(s) 155, 482
RsaNI GTAC 2 cut(s) 154, 481
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 420
Sau3AI GATC 5 cut(s) 241, 265, 295, 344, 550
Sau96I GGNCC 3 cut(s) 31, 163, 232
ScrFI CCNGG 2 cut(s) 60, 161
SduI GDGCHC 1 cut(s) 111
SetI ASST 6 cut(s) 28, 111, 150, 171, 464, 514
SfaNI GCATC 1 cut(s) 551
SinI GGWCC 2 cut(s) 31, 232
Sse9I AATT 2 cut(s) 77, 181
SsiI CCGC 2 cut(s) 121, 245
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 58, 159
StyI CCWWGG 1 cut(s) 396
TaiI ACGT 2 cut(s) 171, 514
TaqI TCGA 2 cut(s) 240, 343
TaqII GACCGA 1 cut(s) 158
TasI AATT 2 cut(s) 77, 181
TfiI GAWTC 3 cut(s) 38, 392, 445
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseFI GTSAC 2 cut(s) 62, 436
Tsp45I GTSAC 2 cut(s) 62, 436
TspDTI ATGAA 1 cut(s) 381
TspGWI ACGGA 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 31, 232
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.