Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

13052503 .. 13053742

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGAAGACGAAATATGGAGAGAGACATAGGAAAGGGTTATGGTCACCTGAAGAAGACGAGAAGCTAAGGAGCTTCATCCTCTCTTATGGCCATTCTTGCTGGACCACTGTTCCCATCAAAGCTGGGTTACAAAGGAATGGGAAGAGCTGCAGATTAAGATGGATTAATTACCTAAGACCAGGGTTAAAGAGGGATATGATTAGTGCAGAAGAAGAAGAGACTATCTTGACGTTTCATTCTTCCTTGGGTAACAAGTGGTCGCAAATAGCTAAATTCTTACCGGGAAGAACAGACAATGAGATAAAGAACTATTGGCACTCTCATTTGAAAAAGAAATGGCTCAAGTCTCAGAGCTTACAAGATGCAAAATCTATTTCCCCTCCTTCGTCTTCATCATCATCACTTGTTGCTTGTGGAAAAAGAAATCCGGAAACCTTGATCTCGAATCACGTGTTCTCCTTCCAGAGACTTCTAGAGAACAAATCTTCATCTCCCTCACAAGAAAGCAACGGAAATAACAGCCATCAATGTTCTTCTGCTCCTGAGATTCCAAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCATATCCCCACACCGATTATTCCTCTGAGTTTACCGACTCTAAGCACAGTCAAGCTCCAAATGTCGAAGAGACTCTCTCAGCTTATGAAGAAATGGGTGATGTTGATCAGTTCCATTACAACGAAATGATGATCAACAACAGCAACTGGACTCTTAACGACATTGTGTTTGGTTCCAAATGTAAGAAGCAGGAGCATCATATTTATAGAGAGGCTTCAGATTGTAATTCTTCTGCTGAATTCTTTTCTCCATCAACAACGACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

283

Amino Acids

32.43

Weight (kDa)

7.68

Isoelectric Point (pI)

67.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 44	9.1e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	3 - 47	4.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	430
AcoI	YGGCCR	1 cut(s)	91
AcsI	RAATTY	2 cut(s)	275, 824
AcuI	CTGAAG	2 cut(s)	72, 786
AcvI	CACGTG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	8 cut(s)	67, 75, 125, 150, 272, 357, 641, 668
AluI	AGCT	8 cut(s)	67, 75, 125, 150, 272, 357, 641, 668
Alw26I	GTCTC	5 cut(s)	19, 215, 354, 463, 650
AlwNI	CAGNNNCTG	1 cut(s)	732
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	1 cut(s)	150
ApoI	RAATTY	2 cut(s)	275, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	39, 695
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	454
BbsI	GAAGAC	3 cut(s)	14, 63, 384
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	4 cut(s)	125, 156, 534, 844
BciT130I	CCWGG	1 cut(s)	183
BclI	TGATCA	2 cut(s)	691, 717
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	5 cut(s)	19, 215, 354, 463, 650
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
Bme1390I	CCNGG	2 cut(s)	183, 285
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	183, 285
BmsI	GCATC	2 cut(s)	355, 790
BpiI	GAAGAC	3 cut(s)	14, 63, 384
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	690
BsaJI	CCNNGG	3 cut(s)	182, 246, 554
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bse1I	ACTGG	1 cut(s)	737
Bse8I	GATNNNNATC	1 cut(s)	690
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	182, 246, 554
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	690
BseMII	CTCAG	4 cut(s)	365, 537, 603, 678
BseNI	ACTGG	1 cut(s)	737
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	284, 431
BsmAI	GTCTC	5 cut(s)	19, 215, 354, 463, 650
BsnI	GGCC	1 cut(s)	93
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	441, 691, 717
BspANI	GGCC	1 cut(s)	93
BspCNI	CTCAG	4 cut(s)	364, 538, 604, 677
BspEI	TCCGGA	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	155
BspQI	GCTCTTC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	737
BssECI	CCNNGG	3 cut(s)	182, 246, 554
BssMI	GATC	3 cut(s)	441, 691, 717
BssT1I	CCWWGG	2 cut(s)	246, 554
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	2 cut(s)	112, 635
Bst6I	CTCTTC	3 cut(s)	140, 213, 648
BstBAI	YACGTR	1 cut(s)	454
BstDEI	CTNAG	7 cut(s)	68, 176, 351, 546, 612, 627, 664
BstEII	GGTNACC	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	3 cut(s)	444, 694, 720
BstMAI	GTCTC	5 cut(s)	19, 215, 354, 463, 650
BstMBI	GATC	3 cut(s)	441, 691, 717
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	181, 283
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	3 cut(s)	14, 63, 384
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	108
CaiI	CAGNNNCTG	1 cut(s)	732
Cfr13I	GGNCC	1 cut(s)	105
DdeI	CTNAG	7 cut(s)	68, 176, 351, 546, 612, 627, 664
DpnI	GATC	3 cut(s)	443, 693, 719
DpnII	GATC	3 cut(s)	441, 691, 717
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	3 cut(s)	140, 213, 648
EarI	CTCTTC	3 cut(s)	140, 213, 648
Eco130I	CCWWGG	2 cut(s)	246, 554
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	72, 786
Eco72I	CACGTG	1 cut(s)	454
Eco91I	GGTNACC	1 cut(s)	45
EcoO65I	GGTNACC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	2 cut(s)	246, 554
ErhI	CCWWGG	2 cut(s)	246, 554
FaiI	YATR	9 cut(s)	18, 30, 43, 90, 200, 589, 672, 786, 792
FbaI	TGATCA	2 cut(s)	691, 717
Fnu4HI	GCNGC	1 cut(s)	151
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	1 cut(s)	151
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	2 cut(s)	284, 431
HinfI	GANTC	5 cut(s)	448, 550, 623, 658, 736
HpaII	CCGG	2 cut(s)	284, 431
HphI	GGTGA	2 cut(s)	39, 695
Hpy166II	GTNNAC	1 cut(s)	618
Hpy188I	TCNGA	4 cut(s)	354, 571, 613, 805
Hpy188III	TCNNGA	6 cut(s)	229, 431, 445, 466, 476, 545
Hpy8I	GTNNAC	1 cut(s)	618
Hpy99I	CGWCG	1 cut(s)	850
HpyAV	CCTTC	2 cut(s)	396, 472
HpyCH4III	ACNGT	2 cut(s)	112, 635
HpyCH4IV	ACGT	3 cut(s)	233, 453, 848
HpyCH4V	TGCA	3 cut(s)	153, 209, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	7 cut(s)	68, 176, 351, 546, 612, 627, 664
HpySE526I	ACGT	3 cut(s)	233, 453, 848
Kpn2I	TCCGGA	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	691, 717
Kzo9I	GATC	3 cut(s)	441, 691, 717
LguI	GCTCTTC	1 cut(s)	140
LmnI	GCTCC	4 cut(s)	72, 547, 646, 778
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	2 cut(s)	355, 790
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	3 cut(s)	233, 453, 848
MaeIII	GTNAC	3 cut(s)	45, 129, 251
MalI	GATC	3 cut(s)	443, 693, 719
MboI	GATC	3 cut(s)	441, 691, 717
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	4 cut(s)	169, 275, 811, 824
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	3 cut(s)	617, 652, 730
MnlI	CCTC	6 cut(s)	92, 186, 393, 508, 619, 790
Mox20I	TGGCCA	1 cut(s)	93
MroI	TCCGGA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	4 cut(s)	158, 168, 188, 741
Msp20I	TGGCCA	1 cut(s)	93
MspI	CCGG	2 cut(s)	284, 431
MspR9I	CCNGG	2 cut(s)	183, 285
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	99
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	3 cut(s)	441, 691, 717
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	448, 550
PkrI	GCNGC	1 cut(s)	152
PleI	GAGTC	3 cut(s)	617, 652, 730
PmaCI	CACGTG	1 cut(s)	454
PmlI	CACGTG	1 cut(s)	454
PpsI	GAGTC	3 cut(s)	617, 652, 730
Ppu21I	YACGTR	1 cut(s)	454
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	181
PspCI	CACGTG	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	732
SapI	GCTCTTC	1 cut(s)	140
SaqAI	TTAA	4 cut(s)	158, 168, 188, 741
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	3 cut(s)	441, 691, 717
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	3 cut(s)	617, 652, 730
ScrFI	CCNGG	2 cut(s)	183, 285
SfaNI	GCATC	2 cut(s)	355, 790
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	4 cut(s)	169, 275, 811, 824
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	2 cut(s)	181, 283
StyI	CCWWGG	2 cut(s)	246, 554
TaaI	ACNGT	2 cut(s)	112, 635
TaiI	ACGT	3 cut(s)	236, 456, 851
TaqI	TCGA	2 cut(s)	446, 651
TasI	AATT	4 cut(s)	169, 275, 811, 824
TfiI	GAWTC	2 cut(s)	448, 550
Tru1I	TTAA	4 cut(s)	158, 168, 188, 741
Tru9I	TTAA	4 cut(s)	158, 168, 188, 741
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	6 cut(s)	67, 227, 384, 480, 576, 687
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	105
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	2 cut(s)	275, 824
XbaI	TCTAGA	1 cut(s)	475
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.