Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

33587547 .. 33589287

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1268000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGGTGCAGGCCATCAGATAAGCCGAAGGCAAAACACAGAAAGGGATTGTGGTCACCAGAAGAAGACCTAAGGCTTCGAAACTACATCCTCAAACACGGCCACGGCTGCTGGAGCTCCGTCCCGATAAACGCCGACTTGCAGAGGAATGGAAAAAGCTGCAGATTAAGGTGGATAAATTACTTAAGGCCAGGGTTAAAGAGAGGGACATTTAGCAAACAAGAGGAGGAGACAATCCTGACCCTTCATCACATGTTAGGCAACAAGTGGTCTCAAATTGCACAGCATTTGCCAGGAAGGACAGACAATGAGATAAAAAACTATTGGCATTCTTATTTGAAGAAGCAAGTGGCCAAAGCTGACGAAACAATGGAAGGTCAAAGAAAATCCCAGTACACAAGCACTTCAAGCTCAGAAATCTTGGAGTGTTCACCATCTCCCCAAAAGTCAACAACCGGCATCAATCCCAGTTATGAATCATTGCAAAAACCGCCGCCATTCGATGACTTATCCAAAGATCAGAACTGTCACTTAAGCCCTTTACCAAAGATTATGTTTGCCGAGTGGCTCTCCTTGGACCATGTTCATGGCGGGAGCTTTGCAAACAACATCAGTGATACTGGGGTTTCGAGGGAAGGATTTGATCATAGTACCACTTCAAATAACCTGCAAGCAGATCATGATCTAGGACATGGTTTTGAGTTGACCAATGAGGGAACATTTGGCAGTGGTTTTCATCATGGGATAAGCCATCATCATGGTTCGGGTTTGGAGATGATCAATTCGCAGTATAAGTTTGAGGAACAGATTTCAGGAACAGCGTTTGTTGATTTTGTAGATTTGTGTAGTGATTTCAACTTGCAGAATGATGCAATGTATTTTTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.59

Weight (kDa)

6.65

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.1e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 78	1.2e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	3.5e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 119	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	885
Acc36I	ACCTGC	1 cut(s)	675
AciI	CCGC	3 cut(s)	491, 494, 591
AcoI	YGGCCR	2 cut(s)	100, 351
AfaI	GTAC	2 cut(s)	395, 652
AflII	CTTAAG	2 cut(s)	184, 532
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	4 cut(s)	340, 408, 660, 856
AjnI	CCWGG	2 cut(s)	190, 292
AluBI	AGCT	5 cut(s)	117, 159, 359, 411, 597
AluI	AGCT	5 cut(s)	117, 159, 359, 411, 597
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	224, 276
AoxI	GGCC	4 cut(s)	11, 100, 188, 351
ApeKI	GCWGC	2 cut(s)	108, 159
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	2 cut(s)	48, 423
AsuII	TTCGAA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	577
AxyI	CCTNAGG	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BalI	TGGCCA	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	95, 146
BccI	CCATC	3 cut(s)	22, 442, 759
BceAI	ACGGC	2 cut(s)	115, 121
BciT130I	CCWGG	2 cut(s)	192, 294
BclI	TGATCA	2 cut(s)	643, 777
BcoDI	GTCTC	2 cut(s)	224, 276
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	160
BfrI	CTTAAG	2 cut(s)	184, 532
BfuAI	ACCTGC	1 cut(s)	675
BisI	GCNGC	3 cut(s)	109, 160, 494
BlsI	GCNGC	3 cut(s)	110, 161, 495
Bme1390I	CCNGG	2 cut(s)	192, 294
Bme18I	GGWCC	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	577
BmrFI	CCNGG	2 cut(s)	192, 294
BmrI	ACTGGG	3 cut(s)	385, 462, 630
BmsI	GCATC	2 cut(s)	468, 859
BmuI	ACTGGG	3 cut(s)	385, 462, 630
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
BpmI	CTGGAG	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	681
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	103, 191, 573
Bse118I	RCCGGY	1 cut(s)	455
Bse1I	ACTGG	3 cut(s)	391, 468, 625
Bse21I	CCTNAGG	1 cut(s)	71
Bse3DI	GCAATG	2 cut(s)	479, 879
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	2 cut(s)	192, 294
BseDI	CCNNGG	3 cut(s)	103, 191, 573
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	681
BseMI	GCAATG	2 cut(s)	479, 879
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	3 cut(s)	391, 468, 625
BseRI	GAGGAG	2 cut(s)	239, 242
BseXI	GCAGC	2 cut(s)	95, 146
BsgI	GTGCAG	1 cut(s)	28
BshFI	GGCC	4 cut(s)	13, 102, 190, 353
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	456
BslFI	GGGAC	2 cut(s)	107, 220
BsmAI	GTCTC	2 cut(s)	224, 276
BsmFI	GGGAC	2 cut(s)	107, 220
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	13, 102, 190, 353
Bso31I	GGTCTC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	5 cut(s)	517, 643, 676, 682, 777
BspACI	CCGC	3 cut(s)	491, 494, 591
BspANI	GGCC	4 cut(s)	13, 102, 190, 353
BspCNI	CTCAG	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	164
BspMI	ACCTGC	1 cut(s)	675
BspT104I	TTCGAA	1 cut(s)	79
BspTI	CTTAAG	2 cut(s)	184, 532
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	2 cut(s)	479, 879
BsrFI	RCCGGY	1 cut(s)	455
BsrI	ACTGG	3 cut(s)	391, 468, 625
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	103, 191, 573
BssMI	GATC	5 cut(s)	517, 643, 676, 682, 777
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	2 cut(s)	192, 294
Bst4CI	ACNGT	1 cut(s)	527
BstAFI	CTTAAG	2 cut(s)	184, 532
BstBI	TTCGAA	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	11, 672
BstDEI	CTNAG	2 cut(s)	71, 412
BstDSI	CCRYGG	1 cut(s)	103
BstEII	GGTNACC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	5 cut(s)	520, 646, 679, 685, 780
BstMAI	GTCTC	2 cut(s)	224, 276
BstMBI	GATC	5 cut(s)	517, 643, 676, 682, 777
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 114, 408, 490
BstNI	CCWGG	2 cut(s)	192, 294
BstNSI	RCATGY	1 cut(s)	256
BstPI	GGTNACC	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	190, 292
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	95, 146
BstV2I	GAAGAC	1 cut(s)	72
BstXI	CCANNNNNNTGG	2 cut(s)	587, 758
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	13, 102, 190, 353
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	733
BtsIMutI	CAGTG	2 cut(s)	619, 733
BveI	ACCTGC	1 cut(s)	675
Cac8I	GCNNGC	2 cut(s)	11, 672
CciI	TCATGA	1 cut(s)	679
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	577
Csp6I	GTAC	2 cut(s)	394, 651
CviAII	CATG	7 cut(s)	253, 581, 587, 680, 692, 740, 758
CviQI	GTAC	2 cut(s)	394, 651
DdeI	CTNAG	2 cut(s)	71, 412
DpnI	GATC	5 cut(s)	519, 645, 678, 684, 779
DpnII	GATC	5 cut(s)	517, 643, 676, 682, 777
EaeI	YGGCCR	2 cut(s)	100, 351
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	577
Eco53kI	GAGCTC	1 cut(s)	117
Eco81I	CCTNAGG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	117
EcoO65I	GGTNACC	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	190, 292
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	7 cut(s)	256, 584, 590, 683, 695, 743, 761
FaqI	GGGAC	2 cut(s)	107, 220
FatI	CATG	7 cut(s)	252, 580, 586, 679, 691, 739, 757
FauI	CCCGC	1 cut(s)	584
FbaI	TGATCA	2 cut(s)	643, 777
Fnu4HI	GCNGC	3 cut(s)	109, 160, 494
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	109, 160, 494
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	3 cut(s)	109, 160, 494
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	4 cut(s)	13, 102, 190, 353
HapII	CCGG	1 cut(s)	456
Hin1II	CATG	7 cut(s)	256, 584, 590, 683, 695, 743, 761
HincII	GTYRAC	2 cut(s)	450, 705
HindII	GTYRAC	2 cut(s)	450, 705
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	2 cut(s)	48, 423
Hpy166II	GTNNAC	4 cut(s)	396, 431, 450, 705
Hpy188I	TCNGA	3 cut(s)	19, 415, 522
Hpy188III	TCNNGA	4 cut(s)	124, 238, 680, 813
Hpy8I	GTNNAC	4 cut(s)	396, 431, 450, 705
HpyAV	CCTTC	5 cut(s)	22, 254, 291, 368, 629
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	9 cut(s)	9, 142, 162, 281, 484, 602, 670, 862, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 114, 408, 490
HpyF3I	CTNAG	2 cut(s)	71, 412
Hsp92II	CATG	7 cut(s)	256, 584, 590, 683, 695, 743, 761
Ksp22I	TGATCA	2 cut(s)	643, 777
Kzo9I	GATC	5 cut(s)	517, 643, 676, 682, 777
LmnI	GCTCC	3 cut(s)	114, 122, 594
Lsp1109I	GCAGC	2 cut(s)	95, 146
LweI	GCATC	2 cut(s)	468, 859
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	54, 527
MalI	GATC	5 cut(s)	519, 645, 678, 684, 779
MboI	GATC	5 cut(s)	517, 643, 676, 682, 777
MboII	GAAGA	3 cut(s)	74, 77, 352
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	3 cut(s)	178, 276, 781
MluNI	TGGCCA	1 cut(s)	353
MnlI	CCTC	8 cut(s)	101, 138, 197, 217, 220, 624, 706, 793
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	4 cut(s)	167, 185, 197, 533
MslI	CAYNNNNRTG	2 cut(s)	585, 756
Msp20I	TGGCCA	1 cut(s)	353
MspCI	CTTAAG	2 cut(s)	184, 532
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	192, 294
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	192, 294
MwoI	GCNNNNNNNGC	4 cut(s)	108, 114, 408, 490
NdeII	GATC	5 cut(s)	517, 643, 676, 682, 777
NlaIII	CATG	7 cut(s)	256, 584, 590, 683, 695, 743, 761
NmeAIII	GCCGAG	1 cut(s)	586
NmuCI	GTSAC	2 cut(s)	54, 527
NspI	RCATGY	1 cut(s)	256
NspV	TTCGAA	1 cut(s)	79
PagI	TCATGA	1 cut(s)	679
PciI	ACATGT	1 cut(s)	252
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	3 cut(s)	110, 161, 495
PscI	ACATGT	1 cut(s)	252
PsiI	TTATAA	1 cut(s)	885
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	190, 292
PspEI	GGTNACC	1 cut(s)	54
PspGI	CCWGG	2 cut(s)	190, 292
PspPI	GGNCC	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	395, 652
RsaNI	GTAC	2 cut(s)	394, 651
RseI	CAYNNNNRTG	2 cut(s)	585, 756
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	4 cut(s)	167, 185, 197, 533
SatI	GCNGC	3 cut(s)	109, 160, 494
Sau3AI	GATC	5 cut(s)	517, 643, 676, 682, 777
Sau96I	GGNCC	1 cut(s)	577
ScrFI	CCNGG	2 cut(s)	192, 294
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	9 cut(s)	72, 119, 161, 173, 361, 379, 413, 599, 669
SfaNI	GCATC	2 cut(s)	468, 859
SfcI	CTRYAG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	79
SinI	GGWCC	1 cut(s)	577
SmiMI	CAYNNNNRTG	2 cut(s)	585, 756
SmlI	CTYRAG	2 cut(s)	184, 532
SmoI	CTYRAG	2 cut(s)	184, 532
Sse9I	AATT	3 cut(s)	178, 276, 781
SsiI	CCGC	3 cut(s)	491, 494, 591
SspMI	CTAG	1 cut(s)	686
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	190, 292
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	3 cut(s)	79, 501, 629
TasI	AATT	3 cut(s)	178, 276, 781
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	4 cut(s)	167, 185, 197, 533
Tru9I	TTAA	4 cut(s)	167, 185, 197, 533
TscAI	CASTG	2 cut(s)	619, 733
TseFI	GTSAC	2 cut(s)	54, 527
TseI	GCWGC	2 cut(s)	108, 159
Tsp45I	GTSAC	2 cut(s)	54, 527
TspDTI	ATGAA	4 cut(s)	236, 489, 575, 725
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	619, 733
Vha464I	CTTAAG	2 cut(s)	184, 532
VpaK11BI	GGWCC	1 cut(s)	577
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.