Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

21220031 .. 21221288

Gene Structure 1258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGACCAAATCTGGAGAGAGACCAAAACAGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGACCAGAAGCTCAAGAGTTTCATCCTCTCTCGTGGCCATGCTTGCTGGACCACTGTTCCCATCCTAGCTGGATTGCAAAGGAATGGGAAAAGCTGCAGATTAAGGTGGATTAATTACCTAAGACCAGGACTAAAGAGGGGGTCGTTTAGTGAAGAAGAAGAAGAGACCATCTTGACTTTACATTCTTCCTTGGGTAACAAGTGGTCTCGGATTGCAAAATATTTACCGGGAAGAACAGACAACGAGATTAAGAACTATTGGCATTCCTATCTGAAGAAGAGATGGCTCAAATCTCAACCACAACTCAAAAGCCAAATATCAGACCTCACAGAATCTCCTTCTTCACTACTTTCTTGCGGGAAAAGAAATCTGGAAACCGAAACCCTAGATCACGTGATCTCCTTCCAGAAATTTTCAGAGAATCCAACTTCATCACCATCCAAAGAAAGCAACAACAACATGATCATGAACAACAGTAATAACTTGCCTAAACTGTTCTTCTCTGAGTGGATCAGTTCTTCAAATCCACACATCGATTACTCCTCTGCTTTTACAGATTCCAAGCACATTAATGAAACTCAAGATCAAATCAATGAAGAGGAAGTGATGATGATCAATAACAACAACTACTCTTCACTTGAGGATGTCATGCTCCGTACAGATTTTTTGCAGCCTGATCATGAATATGCAAATTATTATTCTTCTGGAGATTTCTTCATCAACAGTGACCAAAATTATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

268

Amino Acids

31.18

Weight (kDa)

7.06

Isoelectric Point (pI)

70.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.3e-10	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	9e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 114	9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	78, 356
AcvI	CACGTG	1 cut(s)	457
AfaI	GTAC	1 cut(s)	721
AgsI	TTSAA	1 cut(s)	585
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	73, 131, 156
AluI	AGCT	3 cut(s)	73, 131, 156
Alw26I	GTCTC	4 cut(s)	13, 25, 221, 273
AlwI	GGATC	1 cut(s)	581
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	156, 733
ApoI	RAATTY	1 cut(s)	473
AseI	ATTAAT	2 cut(s)	174, 633
AspS9I	GGNCC	1 cut(s)	111
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	45, 489
AvaII	GGWCC	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	99
BauI	CACGAG	1 cut(s)	93
BbrPI	CACGTG	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	143, 745
BccI	CCATC	4 cut(s)	131, 239, 339, 508
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	3 cut(s)	525, 675, 739
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	4 cut(s)	13, 25, 221, 273
BfaI	CTAG	2 cut(s)	128, 449
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	2 cut(s)	157, 734
BlsI	GCNGC	2 cut(s)	158, 735
Bme1390I	CCNGG	2 cut(s)	189, 291
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	189, 291
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	2 cut(s)	33, 789
BpuEI	CTTGAG	3 cut(s)	59, 627, 722
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	597
BsaAI	YACGTR	1 cut(s)	457
BsaBI	GATNNNNATC	1 cut(s)	674
BsaI	GGTCTC	3 cut(s)	13, 221, 273
BsaJI	CCNNGG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	4 cut(s)	382, 412, 446, 476
Bse8I	GATNNNNATC	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	4 cut(s)	84, 123, 500, 712
BseJI	GATNNNNATC	1 cut(s)	674
BseMII	CTCAG	1 cut(s)	558
BseRI	GAGGAG	1 cut(s)	595
BseXI	GCAGC	2 cut(s)	143, 745
BshFI	GGCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	290
BsmAI	GTCTC	4 cut(s)	13, 25, 221, 273
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	1 cut(s)	99
Bso31I	GGTCTC	3 cut(s)	13, 221, 273
Bsp143I	GATC	7 cut(s)	451, 459, 525, 573, 646, 675, 739
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	559
BspDI	ATCGAT	1 cut(s)	597
BspHI	TCATGA	2 cut(s)	528, 742
BspMAI	CTGCAG	1 cut(s)	161
BspPI	GGATC	1 cut(s)	581
BspTNI	GGTCTC	3 cut(s)	13, 221, 273
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	7 cut(s)	451, 459, 525, 573, 646, 675, 739
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	4 cut(s)	118, 539, 558, 788
Bst6I	CTCTTC	4 cut(s)	219, 335, 654, 700
BstBAI	YACGTR	1 cut(s)	457
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	182, 567
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	4 cut(s)	84, 123, 500, 712
BstKTI	GATC	7 cut(s)	454, 462, 528, 576, 649, 678, 742
BstMAI	GTCTC	4 cut(s)	13, 25, 221, 273
BstMBI	GATC	7 cut(s)	451, 459, 525, 573, 646, 675, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	187, 289
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	143, 745
BstV2I	GAAGAC	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	597
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	597
BtsCI	GGATG	4 cut(s)	84, 123, 500, 712
BtsIMutI	CAGTG	2 cut(s)	114, 793
Cac8I	GCNNGC	1 cut(s)	106
CciI	TCATGA	2 cut(s)	528, 742
Cfr13I	GGNCC	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	720
CviAII	CATG	5 cut(s)	101, 523, 529, 712, 743
CviJI	RGCY	7 cut(s)	73, 99, 131, 156, 349, 375, 736
CviKI_1	RGCY	7 cut(s)	73, 99, 131, 156, 349, 375, 736
CviQI	GTAC	1 cut(s)	720
DdeI	CTNAG	2 cut(s)	182, 567
DpnI	GATC	7 cut(s)	453, 461, 527, 575, 648, 677, 741
DpnII	GATC	7 cut(s)	451, 459, 525, 573, 646, 675, 739
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	4 cut(s)	219, 335, 654, 700
EarI	CTCTTC	4 cut(s)	219, 335, 654, 700
Eco130I	CCWWGG	1 cut(s)	252
Eco31I	GGTCTC	3 cut(s)	13, 221, 273
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	78, 356
Eco72I	CACGTG	1 cut(s)	457
Eco91I	GGTNACC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	5 cut(s)	104, 526, 532, 715, 746
FaiI	YATR	8 cut(s)	49, 102, 524, 530, 713, 744, 750, 801
FatI	CATG	5 cut(s)	100, 522, 528, 711, 742
FauI	CCCGC	1 cut(s)	413
FbaI	TGATCA	3 cut(s)	525, 675, 739
Fnu4HI	GCNGC	2 cut(s)	157, 734
FokI	GGATG	4 cut(s)	71, 110, 487, 719
Fsp4HI	GCNGC	2 cut(s)	157, 734
FspBI	CTAG	2 cut(s)	128, 449
GluI	GCNGC	2 cut(s)	157, 734
GsuI	CTGGAG	2 cut(s)	33, 789
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	290
Hin1II	CATG	5 cut(s)	104, 526, 532, 715, 746
HinfI	GANTC	3 cut(s)	395, 484, 620
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	2 cut(s)	45, 489
Hpy188I	TCNGA	5 cut(s)	273, 336, 385, 481, 568
Hpy188III	TCNNGA	9 cut(s)	12, 76, 235, 434, 469, 529, 644, 743, 768
HpyAV	CCTTC	2 cut(s)	411, 475
HpyCH4III	ACNGT	4 cut(s)	118, 539, 558, 788
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	139, 159, 278, 733, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	182, 567
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	5 cut(s)	104, 526, 532, 715, 746
Ksp22I	TGATCA	3 cut(s)	525, 675, 739
Kzo9I	GATC	7 cut(s)	451, 459, 525, 573, 646, 675, 739
LmnI	GCTCC	1 cut(s)	720
Lsp1109I	GCAGC	2 cut(s)	143, 745
MaeI	CTAG	2 cut(s)	128, 449
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	3 cut(s)	51, 257, 788
MalI	GATC	7 cut(s)	453, 461, 527, 575, 648, 677, 741
MboI	GATC	7 cut(s)	451, 459, 525, 573, 646, 675, 739
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	4 cut(s)	175, 473, 754, 796
MluNI	TGGCCA	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	512
MnlI	CCTC	7 cut(s)	30, 98, 192, 398, 616, 655, 697
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	4 cut(s)	164, 174, 312, 633
MslI	CAYNNNNRTG	3 cut(s)	527, 633, 747
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	2 cut(s)	189, 291
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	7 cut(s)	451, 459, 525, 573, 646, 675, 739
NlaIII	CATG	5 cut(s)	104, 526, 532, 715, 746
NmuCI	GTSAC	2 cut(s)	51, 788
PagI	TCATGA	2 cut(s)	528, 742
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	395, 484, 620
PkrI	GCNGC	2 cut(s)	158, 735
PmaCI	CACGTG	1 cut(s)	457
PmlI	CACGTG	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	457
PshBI	ATTAAT	2 cut(s)	174, 633
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	457
PspEI	GGTNACC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	111
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	721
RsaNI	GTAC	1 cut(s)	720
RseI	CAYNNNNRTG	3 cut(s)	527, 633, 747
SaqAI	TTAA	4 cut(s)	164, 174, 312, 633
SatI	GCNGC	2 cut(s)	157, 734
Sau3AI	GATC	7 cut(s)	451, 459, 525, 573, 646, 675, 739
Sau96I	GGNCC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	189, 291
SetI	ASST	8 cut(s)	58, 75, 133, 158, 170, 183, 390, 459
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	3 cut(s)	527, 633, 747
SmlI	CTYRAG	3 cut(s)	74, 642, 701
SmoI	CTYRAG	3 cut(s)	74, 642, 701
Sse9I	AATT	4 cut(s)	175, 473, 754, 796
SsiI	CCGC	1 cut(s)	420
SspI	AATATT	1 cut(s)	284
SspMI	CTAG	2 cut(s)	128, 449
StyD4I	CCNGG	2 cut(s)	187, 289
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	4 cut(s)	118, 539, 558, 788
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	1 cut(s)	597
TasI	AATT	4 cut(s)	175, 473, 754, 796
TfiI	GAWTC	3 cut(s)	395, 484, 620
Tru1I	TTAA	4 cut(s)	164, 174, 312, 633
Tru9I	TTAA	4 cut(s)	164, 174, 312, 633
TscAI	CASTG	2 cut(s)	121, 793
TseFI	GTSAC	2 cut(s)	51, 788
TseI	GCWGC	2 cut(s)	156, 733
Tsp45I	GTSAC	2 cut(s)	51, 788
TspDTI	ATGAA	7 cut(s)	73, 483, 545, 651, 672, 759, 769
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	121, 793
VpaK11BI	GGWCC	1 cut(s)	111
VspI	ATTAAT	2 cut(s)	174, 633
XapI	RAATTY	1 cut(s)	473
XspI	CTAG	2 cut(s)	128, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.