Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

62684787 .. 62686395

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG409100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGGTGTAAGTCATCAGATAGTCCTAAGCCAAAGCCAAAGCACAGAAAGGGATTATGGTCACCTGAAGAAGACCAAAGGCTGAGAAACTACATTCTCAAACATGGCCATGGCTGCTGGAGTTCTGTCCCCATAAACGCCGGTTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATAAATTACTTAAGGCCAGGGTTAAAGAGAGGGACATTTACTAAACAAGAGGAGGAGACAATCCTAACCCTTCATCACATGTTAGGCAACAAGTGGTCTCAGATCGCACAACATTTGCCTGGAAGGACAGACAATGAGATAAAAAACTTCTGGCATTCTTATTTGAAGAAGAAAGTGGCCAAAGATGATGAAGATCAAGATCAAATGGAACTAGCTCAAAGCAAGTCTCAGTACACAAGTACTTCAAGCTCAGATCATAACTTAGATCAGCCTTCACCATGTTCCGAAAAGCTCACAAGCACCCAAATTCCAAGTTACAATGAATCTCCAATATTAGTTCCACAGATTGATCATCAAAGTCAAAGACCTAGCCCCTTGCCAAAGATTTTGTTTGCTGAGTGGCTTTATTTAGATCATGTTCAAGGGGGTAGCATTGGAAACAATACTGGCATTGATCAACATGACTATAATCCGCGAGCAGATCATGGGCTTGGACACAGTTACTCATTCAATAATGAGGCAACATTTGGCAGTATTGGCTTCCATCATGGTCCGGCTACACATGAGATAATGAACTCACAATTTAGATATGATCCTCAGGATCAGATTCCAGGAACTGGGTTTGCTGATTTTATATCTGGGGGTGATTTATGTAGTGATTTCACCTTGCATAATGATGTGATGTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

290

Amino Acids

32.92

Weight (kDa)

6.62

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	3.5e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 79	1.3e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	70 - 115	2.7e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 122	4.2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccII	CGCG	1 cut(s)	655
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	2 cut(s)	767, 789
AcoI	YGGCCR	2 cut(s)	106, 357
AcsI	RAATTY	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	413, 421
AfiI	CCNNNNNNNGG	1 cut(s)	797
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	4 cut(s)	346, 426, 602, 691
AjnI	CCWGG	3 cut(s)	196, 298, 790
AluBI	AGCT	4 cut(s)	165, 395, 429, 472
AluI	AGCT	4 cut(s)	165, 395, 429, 472
Alw26I	GTCTC	3 cut(s)	230, 282, 411
AlwI	GGATC	2 cut(s)	767, 789
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	3 cut(s)	106, 194, 357
ApeKI	GCWGC	2 cut(s)	114, 165
ApoI	RAATTY	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	731
AsuHPI	GGTGA	4 cut(s)	54, 447, 835, 836
AvaII	GGWCC	1 cut(s)	731
AxyI	CCTNAGG	1 cut(s)	777
BalI	TGGCCA	2 cut(s)	108, 359
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	101, 152
BccI	CCATC	1 cut(s)	732
BciT130I	CCWGG	3 cut(s)	198, 300, 792
BclI	TGATCA	2 cut(s)	529, 634
BcoDI	GTCTC	3 cut(s)	230, 282, 411
BfaI	CTAG	2 cut(s)	392, 549
BfmI	CTRYAG	1 cut(s)	166
BfrI	CTTAAG	1 cut(s)	190
BisI	GCNGC	2 cut(s)	115, 166
BlsI	GCNGC	2 cut(s)	116, 167
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	3 cut(s)	198, 300, 792
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	731
BmrFI	CCNGG	3 cut(s)	198, 300, 792
BmrI	ACTGGG	1 cut(s)	807
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	27
BsaBI	GATNNNNATC	2 cut(s)	372, 378
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	109, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	797
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	631, 802
Bse21I	CCTNAGG	1 cut(s)	777
Bse8I	GATNNNNATC	2 cut(s)	372, 378
BseBI	CCWGG	3 cut(s)	198, 300, 792
BseDI	CCNNGG	2 cut(s)	109, 197
BseJI	GATNNNNATC	2 cut(s)	372, 378
BseLI	CCNNNNNNNGG	1 cut(s)	797
BseMII	CTCAG	6 cut(s)	74, 293, 422, 444, 567, 791
BseNI	ACTGG	2 cut(s)	631, 802
BseRI	GAGGAG	2 cut(s)	245, 248
BseXI	GCAGC	2 cut(s)	101, 152
Bsh1236I	CGCG	1 cut(s)	655
BshFI	GGCC	3 cut(s)	108, 196, 359
BsiSI	CCGG	2 cut(s)	141, 734
BslFI	GGGAC	2 cut(s)	113, 226
BslI	CCNNNNNNNGG	1 cut(s)	797
BsmAI	GTCTC	3 cut(s)	230, 282, 411
BsmFI	GGGAC	2 cut(s)	113, 226
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	108, 196, 359
Bso31I	GGTCTC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	3 cut(s)	108, 196, 359
BspCNI	CTCAG	6 cut(s)	75, 292, 421, 443, 568, 790
BspFNI	CGCG	1 cut(s)	655
BspMAI	CTGCAG	1 cut(s)	170
BspPI	GGATC	2 cut(s)	767, 789
BspTI	CTTAAG	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	631, 802
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	109, 197
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	3 cut(s)	198, 300, 792
Bst4CI	ACNGT	1 cut(s)	680
BstAFI	CTTAAG	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	8 cut(s)	27, 83, 279, 408, 430, 442, 576, 777
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	655
BstMAI	GTCTC	3 cut(s)	230, 282, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 717
BstNI	CCWGG	3 cut(s)	198, 300, 792
BstNSI	RCATGY	1 cut(s)	262
BstPI	GGTNACC	1 cut(s)	60
BstSCI	CCNGG	3 cut(s)	196, 298, 790
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	655
BstV1I	GCAGC	2 cut(s)	101, 152
BstV2I	GAAGAC	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	777
BsuRI	GGCC	3 cut(s)	108, 196, 359
BtgI	CCRYGG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	657
CaiI	CAGNNNCTG	1 cut(s)	797
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	2 cut(s)	412, 420
CviAII	CATG	9 cut(s)	104, 110, 259, 459, 596, 641, 665, 728, 743
CviQI	GTAC	2 cut(s)	412, 420
DdeI	CTNAG	8 cut(s)	27, 83, 279, 408, 430, 442, 576, 777
EaeI	YGGCCR	2 cut(s)	106, 357
Eco130I	CCWWGG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	731
Eco57I	CTGAAG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	777
Eco91I	GGTNACC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	60
EcoRII	CCWGG	3 cut(s)	196, 298, 790
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	9 cut(s)	107, 113, 262, 462, 599, 644, 668, 731, 746
FaqI	GGGAC	2 cut(s)	113, 226
FatI	CATG	9 cut(s)	103, 109, 258, 458, 595, 640, 664, 727, 742
FbaI	TGATCA	2 cut(s)	529, 634
Fnu4HI	GCNGC	2 cut(s)	115, 166
Fsp4HI	GCNGC	2 cut(s)	115, 166
FspBI	CTAG	2 cut(s)	392, 549
GluI	GCNGC	2 cut(s)	115, 166
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	108, 196, 359
HapII	CCGG	2 cut(s)	141, 734
Hin1II	CATG	9 cut(s)	107, 113, 262, 462, 599, 644, 668, 731, 746
HinfI	GANTC	2 cut(s)	503, 787
HpaII	CCGG	2 cut(s)	141, 734
HphI	GGTGA	4 cut(s)	54, 447, 835, 836
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	5 cut(s)	19, 282, 433, 466, 786
Hpy188III	TCNNGA	2 cut(s)	377, 779
Hpy8I	GTNNAC	1 cut(s)	414
HpyAV	CCTTC	3 cut(s)	260, 297, 462
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4V	TGCA	3 cut(s)	148, 168, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 717
HpyF3I	CTNAG	8 cut(s)	27, 83, 279, 408, 430, 442, 576, 777
Hsp92II	CATG	9 cut(s)	107, 113, 262, 462, 599, 644, 668, 731, 746
Ksp22I	TGATCA	2 cut(s)	529, 634
Lsp1109I	GCAGC	2 cut(s)	101, 152
MaeI	CTAG	2 cut(s)	392, 549
MaeIII	GTNAC	3 cut(s)	60, 494, 680
MboII	GAAGA	5 cut(s)	80, 83, 358, 361, 383
MlsI	TGGCCA	2 cut(s)	108, 359
MluCI	AATT	3 cut(s)	184, 486, 761
MluNI	TGGCCA	2 cut(s)	108, 359
MnlI	CCTC	5 cut(s)	203, 223, 226, 691, 786
Mox20I	TGGCCA	2 cut(s)	108, 359
MscI	TGGCCA	2 cut(s)	108, 359
MseI	TTAA	3 cut(s)	173, 191, 203
MslI	CAYNNNNRTG	2 cut(s)	108, 855
Msp20I	TGGCCA	2 cut(s)	108, 359
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	2 cut(s)	141, 734
MspR9I	CCNGG	3 cut(s)	198, 300, 792
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	3 cut(s)	198, 300, 792
MvnI	CGCG	1 cut(s)	655
MwoI	GCNNNNNNNGC	2 cut(s)	114, 717
NcoI	CCATGG	1 cut(s)	109
NlaIII	CATG	9 cut(s)	107, 113, 262, 462, 599, 644, 668, 731, 746
NmuCI	GTSAC	1 cut(s)	60
NspI	RCATGY	1 cut(s)	262
PciI	ACATGT	1 cut(s)	258
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	503, 787
PflMI	CCANNNNNTGG	1 cut(s)	797
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	2 cut(s)	116, 167
PscI	ACATGT	1 cut(s)	258
Psp6I	CCWGG	3 cut(s)	196, 298, 790
PspEI	GGTNACC	1 cut(s)	60
PspGI	CCWGG	3 cut(s)	196, 298, 790
PspPI	GGNCC	1 cut(s)	731
PstI	CTGCAG	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	413, 421
RsaNI	GTAC	2 cut(s)	412, 420
RseI	CAYNNNNRTG	2 cut(s)	108, 855
SaqAI	TTAA	3 cut(s)	173, 191, 203
SatI	GCNGC	2 cut(s)	115, 166
Sau96I	GGNCC	1 cut(s)	731
ScaI	AGTACT	1 cut(s)	421
ScrFI	CCNGG	3 cut(s)	198, 300, 792
SetI	ASST	8 cut(s)	67, 167, 179, 397, 431, 474, 550, 848
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	731
SmiMI	CAYNNNNRTG	2 cut(s)	108, 855
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	3 cut(s)	184, 486, 761
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	392, 549
StyD4I	CCNGG	3 cut(s)	196, 298, 790
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	680
TasI	AATT	3 cut(s)	184, 486, 761
TatI	WGTACW	2 cut(s)	411, 419
TfiI	GAWTC	2 cut(s)	503, 787
Tru1I	TTAA	3 cut(s)	173, 191, 203
Tru9I	TTAA	3 cut(s)	173, 191, 203
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	2 cut(s)	114, 165
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	4 cut(s)	242, 384, 516, 767
Van91I	CCANNNNNTGG	1 cut(s)	797
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	731
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	2 cut(s)	392, 549
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.