Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

21647908 .. 21649439

Gene Structure 1532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29420.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGGTGCAAGTCATCAGATAGTCCTAAGCCAAAACCAAAGCACAGAAAGGGTTTATGGTCACCTGAAGAAGACCAAAGGCTGAGAAACTACATTATCAAACATGGCCATGGCTGCTGGAGTTCTGTCCCCATAAATGCCGGTTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATAAATTACTTGAGGCCAGGGTTAAAGAGAGGGATATTTAGTAAACAAGAGGAGGAGACAATCCTCAACCTTCATTGTATGTTAGGCAACAAGTGGTCTCAGATTGCACAACATTTGCCTGGAAGGACAGACAATGAGATAAAAAACTTCTGGCATTCTTATTTGAAGAAGAAGGTGGCCAAAGCTGATGAAGATCAAGATCAAATGGAACTAGCTCAAAGCAAATCACAGTACACAAGTACTTCAAGCTCTGATCATAACTTAGATCAGCATTCACCATGTTCTGAAAAACTCACAAGCACCCAAATTCCAAGTTACAATGAATCACCAACATTAGCTCCACAAATTGATAATCAAAGTCAAAGACCAAGCCCCTTGCCAAGGGTTTTGTTTGCTGAGTGGCTTTCACTAGACCATGTTCAAGGGGGTAGCATTGGAAACAATATTGGCATTGATCAACACAACTATAATCCGCGAGCAGATCATGGCCTTGGGCAAAGTTACACATACAACAATGAGGCAACATTTGGCACTAGTGGCTTCCATCATGGTCCGTCTACGCGGGACATAATGAACTCAGAATTTCGATATGATCCTCAGGATCTGATTCCAGGAACTGGGTTTGTTGATTTTATATATGAGGGTGATTTAGTTACTGATTTTACCTTGCATAATGATGTGATGTATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

291

Amino Acids

33.0

Weight (kDa)

6.7

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	1 - 29	6.7e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccI	GTMKAC	1 cut(s)	737
AccII	CGCG	2 cut(s)	655, 742
AciI	CCGC	2 cut(s)	653, 742
AclWI	GGATC	2 cut(s)	767, 789
AcoI	YGGCCR	2 cut(s)	106, 357
AcsI	RAATTY	2 cut(s)	486, 761
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	413, 421
AfiI	CCNNNNNNNGG	2 cut(s)	561, 797
AgsI	TTSAA	3 cut(s)	346, 426, 602
AhlI	ACTAGT	1 cut(s)	713
AjnI	CCWGG	3 cut(s)	196, 298, 790
AluBI	AGCT	5 cut(s)	165, 365, 395, 429, 518
AluI	AGCT	5 cut(s)	165, 365, 395, 429, 518
Alw26I	GTCTC	2 cut(s)	230, 282
AlwI	GGATC	2 cut(s)	767, 789
AlwNI	CAGNNNCTG	2 cut(s)	784, 797
AoxI	GGCC	4 cut(s)	106, 194, 357, 667
ApeKI	GCWGC	2 cut(s)	114, 165
ApoI	RAATTY	2 cut(s)	486, 761
AspS9I	GGNCC	1 cut(s)	731
AsuHPI	GGTGA	4 cut(s)	54, 447, 498, 836
AvaII	GGWCC	1 cut(s)	731
AxyI	CCTNAGG	1 cut(s)	777
BalI	TGGCCA	2 cut(s)	108, 359
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	101, 152
BccI	CCATC	1 cut(s)	732
BciT130I	CCWGG	3 cut(s)	198, 300, 792
BclI	TGATCA	2 cut(s)	433, 634
BcoDI	GTCTC	2 cut(s)	230, 282
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	3 cut(s)	392, 590, 714
BfmI	CTRYAG	1 cut(s)	166
BisI	GCNGC	2 cut(s)	115, 166
BlsI	GCNGC	2 cut(s)	116, 167
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	3 cut(s)	198, 300, 792
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	731
BmrFI	CCNGG	3 cut(s)	198, 300, 792
BmrI	ACTGGG	1 cut(s)	807
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	211
BsaBI	GATNNNNATC	2 cut(s)	372, 378
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	4 cut(s)	109, 197, 560, 670
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	561, 797
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	802
Bse21I	CCTNAGG	1 cut(s)	777
Bse8I	GATNNNNATC	2 cut(s)	372, 378
BseBI	CCWGG	3 cut(s)	198, 300, 792
BseDI	CCNNGG	4 cut(s)	109, 197, 560, 670
BseJI	GATNNNNATC	2 cut(s)	372, 378
BseLI	CCNNNNNNNGG	2 cut(s)	561, 797
BseMII	CTCAG	5 cut(s)	74, 293, 567, 771, 791
BseNI	ACTGG	1 cut(s)	802
BseRI	GAGGAG	2 cut(s)	245, 248
BseXI	GCAGC	2 cut(s)	101, 152
Bsh1236I	CGCG	2 cut(s)	655, 742
BshFI	GGCC	4 cut(s)	108, 196, 359, 669
BsiSI	CCGG	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	113, 758
BslI	CCNNNNNNNGG	2 cut(s)	561, 797
BsmAI	GTCTC	2 cut(s)	230, 282
BsmFI	GGGAC	2 cut(s)	113, 758
BsmI	GAATGC	2 cut(s)	334, 451
BsnI	GGCC	4 cut(s)	108, 196, 359, 669
Bso31I	GGTCTC	1 cut(s)	282
Bsp143I	GATC	8 cut(s)	373, 379, 433, 445, 634, 661, 772, 781
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	2 cut(s)	653, 742
BspANI	GGCC	4 cut(s)	108, 196, 359, 669
BspCNI	CTCAG	5 cut(s)	75, 292, 568, 770, 790
BspFNI	CGCG	2 cut(s)	655, 742
BspMAI	CTGCAG	1 cut(s)	170
BspPI	GGATC	2 cut(s)	767, 789
BspTNI	GGTCTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	802
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	4 cut(s)	109, 197, 560, 670
BssMI	GATC	8 cut(s)	373, 379, 433, 445, 634, 661, 772, 781
BssT1I	CCWWGG	3 cut(s)	109, 560, 670
Bst2UI	CCWGG	3 cut(s)	198, 300, 792
Bst4CI	ACNGT	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	7 cut(s)	27, 83, 279, 442, 576, 757, 777
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	559
BstFNI	CGCG	2 cut(s)	655, 742
BstKTI	GATC	8 cut(s)	376, 382, 436, 448, 637, 664, 775, 784
BstMAI	GTCTC	2 cut(s)	230, 282
BstMBI	GATC	8 cut(s)	373, 379, 433, 445, 634, 661, 772, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 717
BstNI	CCWGG	3 cut(s)	198, 300, 792
BstPI	GGTNACC	1 cut(s)	60
BstSCI	CCNGG	3 cut(s)	196, 298, 790
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	2 cut(s)	655, 742
BstV1I	GCAGC	2 cut(s)	101, 152
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	781
BstYI	RGATCY	1 cut(s)	781
Bsu36I	CCTNAGG	1 cut(s)	777
BsuRI	GGCC	4 cut(s)	108, 196, 359, 669
BtgI	CCRYGG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	657
CaiI	CAGNNNCTG	2 cut(s)	784, 797
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	2 cut(s)	412, 420
CviAII	CATG	6 cut(s)	104, 110, 459, 596, 665, 728
CviQI	GTAC	2 cut(s)	412, 420
DdeI	CTNAG	7 cut(s)	27, 83, 279, 442, 576, 757, 777
DpnI	GATC	8 cut(s)	375, 381, 435, 447, 636, 663, 774, 783
DpnII	GATC	8 cut(s)	373, 379, 433, 445, 634, 661, 772, 781
EaeI	YGGCCR	2 cut(s)	106, 357
Eco130I	CCWWGG	3 cut(s)	109, 560, 670
Eco31I	GGTCTC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	731
Eco57I	CTGAAG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	777
Eco91I	GGTNACC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	559
EcoO65I	GGTNACC	1 cut(s)	60
EcoRII	CCWGG	3 cut(s)	196, 298, 790
EcoT14I	CCWWGG	3 cut(s)	109, 560, 670
ErhI	CCWWGG	3 cut(s)	109, 560, 670
FaeI	CATG	6 cut(s)	107, 113, 462, 599, 668, 731
FaqI	GGGAC	2 cut(s)	113, 758
FatI	CATG	6 cut(s)	103, 109, 458, 595, 664, 727
FauI	CCCGC	1 cut(s)	735
FbaI	TGATCA	2 cut(s)	433, 634
FblI	GTMKAC	1 cut(s)	737
Fnu4HI	GCNGC	2 cut(s)	115, 166
Fsp4HI	GCNGC	2 cut(s)	115, 166
FspBI	CTAG	3 cut(s)	392, 590, 714
GluI	GCNGC	2 cut(s)	115, 166
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	4 cut(s)	108, 196, 359, 669
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	6 cut(s)	107, 113, 462, 599, 668, 731
HinfI	GANTC	2 cut(s)	503, 787
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	54, 447, 498, 836
Hpy166II	GTNNAC	3 cut(s)	224, 414, 738
Hpy188I	TCNGA	6 cut(s)	19, 282, 433, 466, 760, 786
Hpy188III	TCNNGA	2 cut(s)	377, 779
Hpy8I	GTNNAC	3 cut(s)	224, 414, 738
HpyAV	CCTTC	3 cut(s)	260, 297, 346
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4V	TGCA	5 cut(s)	9, 148, 168, 287, 850
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 717
HpyF3I	CTNAG	7 cut(s)	27, 83, 279, 442, 576, 757, 777
Hsp92II	CATG	6 cut(s)	107, 113, 462, 599, 668, 731
Ksp22I	TGATCA	2 cut(s)	433, 634
Kzo9I	GATC	8 cut(s)	373, 379, 433, 445, 634, 661, 772, 781
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	2 cut(s)	101, 152
MaeI	CTAG	3 cut(s)	392, 590, 714
MaeIII	GTNAC	4 cut(s)	60, 494, 680, 832
MalI	GATC	8 cut(s)	375, 381, 435, 447, 636, 663, 774, 783
MboI	GATC	8 cut(s)	373, 379, 433, 445, 634, 661, 772, 781
MboII	GAAGA	5 cut(s)	80, 83, 358, 361, 383
MflI	RGATCY	1 cut(s)	781
MlsI	TGGCCA	2 cut(s)	108, 359
MluCI	AATT	4 cut(s)	184, 486, 525, 761
MluNI	TGGCCA	2 cut(s)	108, 359
MnlI	CCTC	8 cut(s)	186, 203, 223, 226, 254, 691, 786, 814
Mox20I	TGGCCA	2 cut(s)	108, 359
MscI	TGGCCA	2 cut(s)	108, 359
MseI	TTAA	2 cut(s)	173, 203
MslI	CAYNNNNRTG	2 cut(s)	108, 855
Msp20I	TGGCCA	2 cut(s)	108, 359
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	3 cut(s)	198, 300, 792
Mva1269I	GAATGC	2 cut(s)	334, 451
MvaI	CCWGG	3 cut(s)	198, 300, 792
MvnI	CGCG	2 cut(s)	655, 742
MwoI	GCNNNNNNNGC	2 cut(s)	114, 717
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	8 cut(s)	373, 379, 433, 445, 634, 661, 772, 781
NlaIII	CATG	6 cut(s)	107, 113, 462, 599, 668, 731
NmuCI	GTSAC	1 cut(s)	60
PctI	GAATGC	2 cut(s)	334, 451
PfeI	GAWTC	2 cut(s)	503, 787
PflMI	CCANNNNNTGG	1 cut(s)	797
PfoI	TCCNGGA	1 cut(s)	790
PkrI	GCNGC	2 cut(s)	116, 167
Psp6I	CCWGG	3 cut(s)	196, 298, 790
PspEI	GGTNACC	1 cut(s)	60
PspGI	CCWGG	3 cut(s)	196, 298, 790
PspPI	GGNCC	1 cut(s)	731
PstI	CTGCAG	1 cut(s)	170
PstNI	CAGNNNCTG	2 cut(s)	784, 797
PsuI	RGATCY	1 cut(s)	781
RsaI	GTAC	2 cut(s)	413, 421
RsaNI	GTAC	2 cut(s)	412, 420
RseI	CAYNNNNRTG	2 cut(s)	108, 855
SaqAI	TTAA	2 cut(s)	173, 203
SatI	GCNGC	2 cut(s)	115, 166
Sau3AI	GATC	8 cut(s)	373, 379, 433, 445, 634, 661, 772, 781
Sau96I	GGNCC	1 cut(s)	731
ScaI	AGTACT	1 cut(s)	421
ScrFI	CCNGG	3 cut(s)	198, 300, 792
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	731
SmiMI	CAYNNNNRTG	2 cut(s)	108, 855
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
SpeI	ACTAGT	1 cut(s)	713
Sse9I	AATT	4 cut(s)	184, 486, 525, 761
SsiI	CCGC	2 cut(s)	653, 742
SspI	AATATT	1 cut(s)	625
SspMI	CTAG	3 cut(s)	392, 590, 714
StyD4I	CCNGG	3 cut(s)	196, 298, 790
StyI	CCWWGG	3 cut(s)	109, 560, 670
TaaI	ACNGT	1 cut(s)	411
TaqI	TCGA	1 cut(s)	766
TasI	AATT	4 cut(s)	184, 486, 525, 761
TatI	WGTACW	2 cut(s)	411, 419
TfiI	GAWTC	2 cut(s)	503, 787
Tru1I	TTAA	2 cut(s)	173, 203
Tru9I	TTAA	2 cut(s)	173, 203
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	2 cut(s)	114, 165
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	4 cut(s)	242, 384, 516, 767
TspGWI	ACGGA	1 cut(s)	723
Van91I	CCANNNNNTGG	1 cut(s)	797
VpaK11BI	GGWCC	1 cut(s)	731
XagI	CCTNNNNNAGG	1 cut(s)	559
XapI	RAATTY	2 cut(s)	486, 761
XmiI	GTMKAC	1 cut(s)	737
XspI	CTAG	3 cut(s)	392, 590, 714
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.