Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

19249605 .. 19250147

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAAGGTCAAACCAAATCCCAGTACACAAGTACTTCAAGCTCAGAAATCTTAGAGTGTTCACTATCTCCCCAAAAGCCCACAACATGTTTTAATTCGAGTCACGAATCAGTGCAAAAATCACCGCCATTAGTTTCACAGCTCGATGACTTGTCCAAAGATCAGAGCTGTCAAAGAAGCCCTTTACCAAAGATTTTGTTTGCTGAGTGGCTCTCCTTAGACCAGGTTCATGGTGGGAGCTTCGCAAACAACATCAGTGATCCCGGGGTTTTGAAGGAAGAATTTGATCATAGTACTACTTCAAATAATCTGCAAGCAGATCATGCTCTAGGACATGATTTTGTGTTGAACGAAGAGGGAATATTTGGCAGTGGTTTTCATCATGGAATAAGCCATCATCATGGTTTGGGTTTGGAGATGATCAATTCGCAGTTTAAGTTCGAGGAACAGATTTCAGGACCAGGGTTTGTTGATTTTGTATCAGCAGGTGATTTGTACAGTGATTTCAACTTGCAGAATGATGCAATGTATTTTTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

181

Amino Acids

19.9

Weight (kDa)

4.79

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AarI	CACCTGC	1 cut(s)	476
Acc36I	ACCTGC	1 cut(s)	476
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	281
AfaI	GTAC	4 cut(s)	26, 34, 295, 497
AflIII	ACRYGT	1 cut(s)	86
AgsI	TTSAA	5 cut(s)	39, 274, 303, 349, 508
AjnI	CCWGG	2 cut(s)	222, 460
AluBI	AGCT	4 cut(s)	42, 142, 168, 240
AluI	AGCT	4 cut(s)	42, 142, 168, 240
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	2 cut(s)	264, 265
AsuHPI	GGTGA	2 cut(s)	114, 500
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	458
BccI	CCATC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	224, 462
BclI	TGATCA	2 cut(s)	286, 420
BcnI	CCSGG	2 cut(s)	264, 265
BfaI	CTAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	476
BmcAI	AGTACT	2 cut(s)	34, 295
Bme1390I	CCNGG	4 cut(s)	224, 264, 265, 462
Bme18I	GGWCC	1 cut(s)	458
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	458
BmrFI	CCNGG	4 cut(s)	224, 264, 265, 462
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	1 cut(s)	511
BmuI	ACTGGG	1 cut(s)	16
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpuMI	CCSGG	2 cut(s)	264, 265
BsaJI	CCNNGG	3 cut(s)	263, 264, 461
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	224, 462
BseDI	CCNNGG	3 cut(s)	263, 264, 461
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	2 cut(s)	57, 195
BseNI	ACTGG	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	263
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	5 cut(s)	160, 259, 286, 319, 420
BspACI	CCGC	1 cut(s)	125
BspCNI	CTCAG	2 cut(s)	56, 196
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	531
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	3 cut(s)	263, 264, 461
BssMI	GATC	5 cut(s)	160, 259, 286, 319, 420
Bst2UI	CCWGG	2 cut(s)	224, 462
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	1 cut(s)	348
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	4 cut(s)	43, 52, 204, 217
BstKTI	GATC	5 cut(s)	163, 262, 289, 322, 423
BstMBI	GATC	5 cut(s)	160, 259, 286, 319, 420
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	224, 462
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	4 cut(s)	222, 262, 263, 460
BstXI	CCANNNNNNTGG	2 cut(s)	230, 401
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	4 cut(s)	117, 262, 376, 505
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	458
Cfr9I	CCCGGG	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	222
Csp6I	GTAC	4 cut(s)	25, 33, 294, 496
CviAII	CATG	6 cut(s)	87, 230, 323, 335, 383, 401
CviJI	RGCY	8 cut(s)	42, 79, 142, 168, 180, 211, 240, 393
CviKI_1	RGCY	8 cut(s)	42, 79, 142, 168, 180, 211, 240, 393
CviQI	GTAC	4 cut(s)	25, 33, 294, 496
DdeI	CTNAG	4 cut(s)	43, 52, 204, 217
DpnI	GATC	5 cut(s)	162, 261, 288, 321, 422
DpnII	GATC	5 cut(s)	160, 259, 286, 319, 420
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	222, 460
FaeI	CATG	6 cut(s)	90, 233, 326, 338, 386, 404
FaiI	YATR	8 cut(s)	88, 231, 291, 324, 336, 384, 402, 537
FalI	AAGNNNNNCTT	2 cut(s)	166, 198
FatI	CATG	6 cut(s)	86, 229, 322, 334, 382, 400
FbaI	TGATCA	2 cut(s)	286, 420
FspBI	CTAG	1 cut(s)	329
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	6 cut(s)	90, 233, 326, 338, 386, 404
HinfI	GANTC	2 cut(s)	100, 107
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	114, 500
Hpy166II	GTNNAC	2 cut(s)	27, 62
Hpy188I	TCNGA	2 cut(s)	46, 165
Hpy188III	TCNNGA	2 cut(s)	104, 456
Hpy8I	GTNNAC	2 cut(s)	27, 62
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4V	TGCA	4 cut(s)	115, 313, 514, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	4 cut(s)	43, 52, 204, 217
Hsp92II	CATG	6 cut(s)	90, 233, 326, 338, 386, 404
Ksp22I	TGATCA	2 cut(s)	286, 420
Kzo9I	GATC	5 cut(s)	160, 259, 286, 319, 420
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	8 cut(s)	35, 209, 236, 277, 441, 447, 471, 474
LweI	GCATC	1 cut(s)	511
MabI	ACCWGGT	1 cut(s)	222
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	5 cut(s)	162, 261, 288, 321, 422
MboI	GATC	5 cut(s)	160, 259, 286, 319, 420
MboII	GAAGA	2 cut(s)	290, 365
MluCI	AATT	3 cut(s)	94, 281, 424
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	2 cut(s)	349, 436
MseI	TTAA	2 cut(s)	93, 435
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	4 cut(s)	224, 264, 265, 462
MvaI	CCWGG	2 cut(s)	224, 462
MwoI	GCNNNNNNNGC	1 cut(s)	323
NciI	CCSGG	2 cut(s)	264, 265
NdeII	GATC	5 cut(s)	160, 259, 286, 319, 420
NlaIII	CATG	6 cut(s)	90, 233, 326, 338, 386, 404
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	476
PciI	ACATGT	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PscI	ACATGT	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	537
Psp6I	CCWGG	2 cut(s)	222, 460
PspGI	CCWGG	2 cut(s)	222, 460
PspPI	GGNCC	1 cut(s)	458
RsaI	GTAC	4 cut(s)	26, 34, 295, 497
RsaNI	GTAC	4 cut(s)	25, 33, 294, 496
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	93, 435
Sau3AI	GATC	5 cut(s)	160, 259, 286, 319, 420
Sau96I	GGNCC	1 cut(s)	458
ScaI	AGTACT	2 cut(s)	34, 295
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	4 cut(s)	224, 264, 265, 462
SetI	ASST	7 cut(s)	10, 44, 144, 170, 228, 242, 490
SexAI	ACCWGGT	1 cut(s)	222
SfaNI	GCATC	1 cut(s)	511
SinI	GGWCC	1 cut(s)	458
SmaI	CCCGGG	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	399
Sse9I	AATT	3 cut(s)	94, 281, 424
SsiI	CCGC	1 cut(s)	125
SspI	AATATT	1 cut(s)	363
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	4 cut(s)	222, 262, 263, 460
TaaI	ACNGT	1 cut(s)	500
TaqI	TCGA	3 cut(s)	98, 144, 441
TasI	AATT	3 cut(s)	94, 281, 424
TatI	WGTACW	4 cut(s)	24, 32, 293, 495
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	93, 435
Tru9I	TTAA	2 cut(s)	93, 435
TscAI	CASTG	4 cut(s)	117, 262, 376, 505
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	218, 368
TspMI	CCCGGG	1 cut(s)	263
TspRI	CASTG	4 cut(s)	117, 262, 376, 505
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	1 cut(s)	281
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XmaI	CCCGGG	1 cut(s)	263
XspI	CTAG	1 cut(s)	329
ZrmI	AGTACT	2 cut(s)	34, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.