Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Reverse (-)

3715973 .. 3717340

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGGTGTAAGTCATCAGATAGTCCTAAGCCAAAGCCAAAGCACAGAAAGGGATTATGGTCACCTGAAGAAGACCAAAGGCTGAGAAACTACATTCTCAAACATGGCCATGGCTGCTGGAGTTCTGTCCCCATAAACGCCGGATGGTTCTTTGAGTCTACAACAATAGAGTTTGGTTTGTGGTGGTCTCAGATTGCACAACATTTGCCTGGAAGGACAGACAATGAGATAAAAAACTTCTGGCATTCTTATTTGAAGAAGAAAGTGGCCAAAGATGATGAAGATCAAGATCAAATGGAACTAGCTCAAAGCAAGTCTCAGTACACAAGTACTTCCAGCTCTGATCATAACTTAGATCAGCCTTCACCATGTTCCGAAAAGCTCACAAACACCCAAATTCCAAGTTACAATGAATCTCCAATATTAGTTCCACAGATTGATCATCAAAGTCAAAGACCTAGCCCCTTGCCAAAGATTTTGTTTGCTGAGTGGCTTTCACTAGACCATGTTCAAGGGGGTAGCATTGGAAACAATACTGGCATTGATCAACATGACTATAATCCGCGAGCAGATCATGGGATTGGACACAGTTACTCATTCAATAATGAGGCAGCATTTGGCAGTAGTGGCTTCCATCATGGTCCGGCTACACATGAGATAACGAACTCACAATTTAGATATGATCCTCAGGATCAGATTCCAGGAACTGGGTTTCTTGATTTTATATCTGGGGGTGATTTATGTAGTGATTTTACCTTGCATAATGATGTGATGTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

260

Amino Acids

29.35

Weight (kDa)

5.69

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 44	7.1e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 92	6.1e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	62 - 85	4.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	1 cut(s)	565
AciI	CCGC	1 cut(s)	563
AclWI	GGATC	2 cut(s)	677, 699
AcoI	YGGCCR	2 cut(s)	106, 267
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	323, 331
AfiI	CCNNNNNNNGG	1 cut(s)	707
AgsI	TTSAA	3 cut(s)	256, 512, 601
AjnI	CCWGG	2 cut(s)	208, 700
AluBI	AGCT	3 cut(s)	305, 339, 382
AluI	AGCT	3 cut(s)	305, 339, 382
Alw26I	GTCTC	2 cut(s)	192, 321
AlwI	GGATC	2 cut(s)	677, 699
AlwNI	CAGNNNCTG	1 cut(s)	707
AoxI	GGCC	2 cut(s)	106, 267
ApeKI	GCWGC	2 cut(s)	114, 611
ApoI	RAATTY	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	641
AsuHPI	GGTGA	3 cut(s)	54, 357, 746
AvaII	GGWCC	1 cut(s)	641
AxyI	CCTNAGG	1 cut(s)	687
BalI	TGGCCA	2 cut(s)	108, 269
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	101, 623
BccI	CCATC	2 cut(s)	138, 642
BciT130I	CCWGG	2 cut(s)	210, 702
BclI	TGATCA	3 cut(s)	343, 439, 544
BcoDI	GTCTC	2 cut(s)	192, 321
BfaI	CTAG	3 cut(s)	302, 459, 500
BisI	GCNGC	2 cut(s)	115, 612
BlsI	GCNGC	2 cut(s)	116, 613
BmcAI	AGTACT	1 cut(s)	331
Bme1390I	CCNGG	2 cut(s)	210, 702
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	641
BmrFI	CCNGG	2 cut(s)	210, 702
BmrI	ACTGGG	1 cut(s)	717
BmuI	ACTGGG	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	27
BsaBI	GATNNNNATC	2 cut(s)	282, 288
BsaI	GGTCTC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	541, 712
Bse21I	CCTNAGG	1 cut(s)	687
Bse8I	GATNNNNATC	2 cut(s)	282, 288
BseBI	CCWGG	2 cut(s)	210, 702
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	1 cut(s)	149
BseJI	GATNNNNATC	2 cut(s)	282, 288
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMII	CTCAG	5 cut(s)	74, 203, 332, 477, 701
BseNI	ACTGG	2 cut(s)	541, 712
BseXI	GCAGC	2 cut(s)	101, 623
Bsh1236I	CGCG	1 cut(s)	565
BshFI	GGCC	2 cut(s)	108, 269
BsiSI	CCGG	2 cut(s)	141, 644
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	2 cut(s)	192, 321
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	108, 269
Bso31I	GGTCTC	1 cut(s)	192
Bsp143I	GATC	9 cut(s)	283, 289, 343, 355, 439, 544, 571, 682, 691
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	2 cut(s)	108, 269
BspCNI	CTCAG	5 cut(s)	75, 202, 331, 478, 700
BspFNI	CGCG	1 cut(s)	565
BspPI	GGATC	2 cut(s)	677, 699
BspTNI	GGTCTC	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	541, 712
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	9 cut(s)	283, 289, 343, 355, 439, 544, 571, 682, 691
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	210, 702
Bst4CI	ACNGT	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	7 cut(s)	27, 83, 189, 318, 352, 486, 687
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	1 cut(s)	565
BstKTI	GATC	9 cut(s)	286, 292, 346, 358, 442, 547, 574, 685, 694
BstMAI	GTCTC	2 cut(s)	192, 321
BstMBI	GATC	9 cut(s)	283, 289, 343, 355, 439, 544, 571, 682, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 627
BstNI	CCWGG	2 cut(s)	210, 702
BstPI	GGTNACC	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	208, 700
BstUI	CGCG	1 cut(s)	565
BstV1I	GCAGC	2 cut(s)	101, 623
BstV2I	GAAGAC	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	687
BsuRI	GGCC	2 cut(s)	108, 269
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	707
Cfr13I	GGNCC	1 cut(s)	641
Csp6I	GTAC	2 cut(s)	322, 330
CviAII	CATG	8 cut(s)	104, 110, 369, 506, 551, 575, 638, 653
CviQI	GTAC	2 cut(s)	322, 330
DdeI	CTNAG	7 cut(s)	27, 83, 189, 318, 352, 486, 687
DpnI	GATC	9 cut(s)	285, 291, 345, 357, 441, 546, 573, 684, 693
DpnII	GATC	9 cut(s)	283, 289, 343, 355, 439, 544, 571, 682, 691
EaeI	YGGCCR	2 cut(s)	106, 267
Eco130I	CCWWGG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	687
Eco91I	GGTNACC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	60
EcoRII	CCWGG	2 cut(s)	208, 700
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	8 cut(s)	107, 113, 372, 509, 554, 578, 641, 656
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	8 cut(s)	103, 109, 368, 505, 550, 574, 637, 652
FbaI	TGATCA	3 cut(s)	343, 439, 544
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	115, 612
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	115, 612
FspBI	CTAG	3 cut(s)	302, 459, 500
GluI	GCNGC	2 cut(s)	115, 612
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	108, 269
HapII	CCGG	2 cut(s)	141, 644
Hin1II	CATG	8 cut(s)	107, 113, 372, 509, 554, 578, 641, 656
HinfI	GANTC	3 cut(s)	155, 413, 697
HpaII	CCGG	2 cut(s)	141, 644
HphI	GGTGA	3 cut(s)	54, 357, 746
Hpy166II	GTNNAC	2 cut(s)	159, 324
Hpy188I	TCNGA	5 cut(s)	19, 192, 343, 376, 696
Hpy188III	TCNNGA	3 cut(s)	287, 689, 716
Hpy8I	GTNNAC	2 cut(s)	159, 324
HpyAV	CCTTC	2 cut(s)	207, 372
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4V	TGCA	2 cut(s)	197, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 627
HpyF3I	CTNAG	7 cut(s)	27, 83, 189, 318, 352, 486, 687
Hsp92II	CATG	8 cut(s)	107, 113, 372, 509, 554, 578, 641, 656
Ksp22I	TGATCA	3 cut(s)	343, 439, 544
Kzo9I	GATC	9 cut(s)	283, 289, 343, 355, 439, 544, 571, 682, 691
Lsp1109I	GCAGC	2 cut(s)	101, 623
MaeI	CTAG	3 cut(s)	302, 459, 500
MaeIII	GTNAC	3 cut(s)	60, 404, 590
MalI	GATC	9 cut(s)	285, 291, 345, 357, 441, 546, 573, 684, 693
MboI	GATC	9 cut(s)	283, 289, 343, 355, 439, 544, 571, 682, 691
MboII	GAAGA	5 cut(s)	80, 83, 268, 271, 293
MlsI	TGGCCA	2 cut(s)	108, 269
MluCI	AATT	2 cut(s)	396, 671
MluNI	TGGCCA	2 cut(s)	108, 269
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	2 cut(s)	601, 696
Mox20I	TGGCCA	2 cut(s)	108, 269
MscI	TGGCCA	2 cut(s)	108, 269
MslI	CAYNNNNRTG	2 cut(s)	108, 765
Msp20I	TGGCCA	2 cut(s)	108, 269
MspI	CCGG	2 cut(s)	141, 644
MspR9I	CCNGG	2 cut(s)	210, 702
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	2 cut(s)	210, 702
MvnI	CGCG	1 cut(s)	565
MwoI	GCNNNNNNNGC	2 cut(s)	114, 627
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	9 cut(s)	283, 289, 343, 355, 439, 544, 571, 682, 691
NlaIII	CATG	8 cut(s)	107, 113, 372, 509, 554, 578, 641, 656
NmuCI	GTSAC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	2 cut(s)	413, 697
PflMI	CCANNNNNTGG	1 cut(s)	707
PfoI	TCCNGGA	1 cut(s)	700
PkrI	GCNGC	2 cut(s)	116, 613
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	208, 700
PspEI	GGTNACC	1 cut(s)	60
PspGI	CCWGG	2 cut(s)	208, 700
PspPI	GGNCC	1 cut(s)	641
PstNI	CAGNNNCTG	1 cut(s)	707
RsaI	GTAC	2 cut(s)	323, 331
RsaNI	GTAC	2 cut(s)	322, 330
RseI	CAYNNNNRTG	2 cut(s)	108, 765
SatI	GCNGC	2 cut(s)	115, 612
Sau3AI	GATC	9 cut(s)	283, 289, 343, 355, 439, 544, 571, 682, 691
Sau96I	GGNCC	1 cut(s)	641
ScaI	AGTACT	1 cut(s)	331
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	210, 702
SetI	ASST	6 cut(s)	67, 307, 341, 384, 460, 758
SinI	GGWCC	1 cut(s)	641
SmiMI	CAYNNNNRTG	2 cut(s)	108, 765
Sse9I	AATT	2 cut(s)	396, 671
SsiI	CCGC	1 cut(s)	563
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	3 cut(s)	302, 459, 500
StyD4I	CCNGG	2 cut(s)	208, 700
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	590
TasI	AATT	2 cut(s)	396, 671
TatI	WGTACW	2 cut(s)	321, 329
TfiI	GAWTC	2 cut(s)	413, 697
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	2 cut(s)	114, 611
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	2 cut(s)	294, 426
Van91I	CCANNNNNTGG	1 cut(s)	707
VpaK11BI	GGWCC	1 cut(s)	641
XapI	RAATTY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	3 cut(s)	302, 459, 500
ZrmI	AGTACT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.