Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

29712807 .. 29714577

Gene Structure 1771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1200200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGCTGCAAGCCATCAGATAAGCCGAAGGCAAAGTATAGAAAGGGATTGTGGTCACCGGAAGAAGACTTAAGGCTTCGAAACTACATCCTCAAAAACGGCCATGGCTGCTGGAGCTCCGTCCCCATAAACACCGGTTTGCAAAGGAATGGAAAAAGCTGCAGATTAAGGTGGATAAATTATTTAAGGCCGGGGTTAAAGAGAGGGACATTTTGCAAACAAGAGGAGGAGACAATCTTGACCCTTCATCGTATGTTAGGCAACAAGTGGTCTCAAATCGCACAGCATTTGCCTGGAAGGACAGACAATGAGATAAAAAACTACTGGCATTCATATTTGAAGAAGAAAGTGGCCAAAGCAGAGGAAATGGAAGGTCAAACCAAATCCCAGTACACAAGTACTTCAAGCTCAGAAATCTTAGAGTGTTCACCATCTCCCCAAAAGCCCACAACATGTTTTAATTCGAGTCACGAATCAGTGCAAAAATCACCGCCATTAGTTTCACAGCTCGATGACTTGTCCAAAGATCAGAGCTGTCAAAGAAGCCCTTTACCAAAGATTTTGTTTGCTGAGTGGCTCTCCTTAGACCAGGTTCATGGTGGGAGCTTTGCCAACAACATCGGTGATCCCTGGGTTTTGAAGGAAGGATTTGATCATAGTACAACTTCAAATAATCTGCAAGCAGATCATGATCTAGGACATGGTTTTGTGTTGAACGATGAGGGAATATTTGGCAGTGGTTTTCATCATGGGATAAGCCATCATCATGGTTTGGGTTTGGAGATGATCAATTCGCAGTTTAAGTTCGAGGAACAGATTTCAGGACCAGGGTTTGTTGATTTTGTATCAGGGGGTGATTTGTACAGTGATTTCAACTTGCAGAATGATGCAATGTATTTTTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

34.18

Weight (kDa)

7.22

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	3.5e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 77	1.4e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	1.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 120	1.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	1 cut(s)	620
AcoI	YGGCCR	2 cut(s)	100, 351
AfaI	GTAC	4 cut(s)	392, 400, 661, 863
AflII	CTTAAG	1 cut(s)	70
AflIII	ACRYGT	1 cut(s)	452
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	6 cut(s)	340, 405, 640, 669, 715, 874
AjnI	CCWGG	4 cut(s)	292, 588, 629, 826
AluBI	AGCT	6 cut(s)	117, 159, 408, 508, 534, 606
AluI	AGCT	6 cut(s)	117, 159, 408, 508, 534, 606
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	224, 276
AlwI	GGATC	1 cut(s)	620
AoxI	GGCC	3 cut(s)	100, 188, 351
ApeKI	GCWGC	3 cut(s)	6, 108, 159
AsiGI	ACCGGT	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	5 cut(s)	48, 420, 480, 635, 866
AsuII	TTCGAA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	824
BalI	TGGCCA	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	95, 146
BccI	CCATC	3 cut(s)	22, 439, 768
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	4 cut(s)	294, 590, 631, 828
BclI	TGATCA	2 cut(s)	652, 786
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	224, 276
BfaI	CTAG	1 cut(s)	695
BfmI	CTRYAG	1 cut(s)	160
BfrI	CTTAAG	1 cut(s)	70
BisI	GCNGC	3 cut(s)	7, 109, 160
BlsI	GCNGC	3 cut(s)	8, 110, 161
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	5 cut(s)	192, 294, 590, 631, 828
Bme18I	GGWCC	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	824
BmrFI	CCNGG	5 cut(s)	192, 294, 590, 631, 828
BmrI	ACTGGG	1 cut(s)	382
BmsI	GCATC	1 cut(s)	877
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	563, 595
BpmI	CTGGAG	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	103, 191, 629, 630, 827
BsaWI	WCCGGW	2 cut(s)	58, 134
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	329, 388
Bse3DI	GCAATG	1 cut(s)	897
Bse8I	GATNNNNATC	1 cut(s)	690
BseBI	CCWGG	4 cut(s)	294, 590, 631, 828
BseDI	CCNNGG	5 cut(s)	103, 191, 629, 630, 827
BseGI	GGATG	1 cut(s)	87
BseJI	GATNNNNATC	1 cut(s)	690
BseMI	GCAATG	1 cut(s)	897
BseMII	CTCAG	2 cut(s)	423, 561
BseNI	ACTGG	2 cut(s)	329, 388
BseRI	GAGGAG	2 cut(s)	239, 242
BseXI	GCAGC	2 cut(s)	95, 146
BshFI	GGCC	3 cut(s)	102, 190, 353
BshTI	ACCGGT	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	59, 135, 191
BslFI	GGGAC	2 cut(s)	107, 220
BsmAI	GTCTC	2 cut(s)	224, 276
BsmFI	GGGAC	2 cut(s)	107, 220
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	3 cut(s)	102, 190, 353
Bso31I	GGTCTC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	861
Bsp143I	GATC	6 cut(s)	526, 625, 652, 685, 691, 786
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	3 cut(s)	102, 190, 353
BspCNI	CTCAG	2 cut(s)	422, 562
BspHI	TCATGA	1 cut(s)	688
BspMAI	CTGCAG	1 cut(s)	164
BspPI	GGATC	1 cut(s)	620
BspT104I	TTCGAA	1 cut(s)	79
BspTI	CTTAAG	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	897
BsrFI	RCCGGY	1 cut(s)	134
BsrGI	TGTACA	1 cut(s)	861
BsrI	ACTGG	2 cut(s)	329, 388
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	5 cut(s)	103, 191, 629, 630, 827
BssMI	GATC	6 cut(s)	526, 625, 652, 685, 691, 786
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	4 cut(s)	294, 590, 631, 828
Bst4CI	ACNGT	1 cut(s)	866
BstAFI	CTTAAG	1 cut(s)	70
BstAUI	TGTACA	1 cut(s)	861
BstBI	TTCGAA	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	11, 681
BstDEI	CTNAG	4 cut(s)	409, 418, 570, 583
BstDSI	CCRYGG	1 cut(s)	103
BstEII	GGTNACC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	6 cut(s)	529, 628, 655, 688, 694, 789
BstMAI	GTCTC	2 cut(s)	224, 276
BstMBI	GATC	6 cut(s)	526, 625, 652, 685, 691, 786
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 114
BstNI	CCWGG	4 cut(s)	294, 590, 631, 828
BstNSI	RCATGY	1 cut(s)	456
BstPI	GGTNACC	1 cut(s)	54
BstSCI	CCNGG	5 cut(s)	190, 292, 588, 629, 826
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	95, 146
BstV2I	GAAGAC	1 cut(s)	72
BstXI	CCANNNNNNTGG	2 cut(s)	596, 767
BsuRI	GGCC	3 cut(s)	102, 190, 353
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	742
BtsIMutI	CAGTG	3 cut(s)	483, 742, 871
Cac8I	GCNNGC	2 cut(s)	11, 681
CciI	TCATGA	1 cut(s)	688
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	824
CsiI	ACCWGGT	1 cut(s)	588
Csp6I	GTAC	4 cut(s)	391, 399, 660, 862
CspAI	ACCGGT	1 cut(s)	134
CviAII	CATG	7 cut(s)	104, 453, 596, 689, 701, 749, 767
CviQI	GTAC	4 cut(s)	391, 399, 660, 862
DdeI	CTNAG	4 cut(s)	409, 418, 570, 583
DpnI	GATC	6 cut(s)	528, 627, 654, 687, 693, 788
DpnII	GATC	6 cut(s)	526, 625, 652, 685, 691, 786
EaeI	YGGCCR	2 cut(s)	100, 351
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	824
Eco53kI	GAGCTC	1 cut(s)	117
Eco91I	GGTNACC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	117
EcoO65I	GGTNACC	1 cut(s)	54
EcoRII	CCWGG	4 cut(s)	292, 588, 629, 826
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	7 cut(s)	107, 456, 599, 692, 704, 752, 770
FalI	AAGNNNNNCTT	2 cut(s)	532, 564
FaqI	GGGAC	2 cut(s)	107, 220
FatI	CATG	7 cut(s)	103, 452, 595, 688, 700, 748, 766
FbaI	TGATCA	2 cut(s)	652, 786
Fnu4HI	GCNGC	3 cut(s)	7, 109, 160
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	7, 109, 160
FspBI	CTAG	1 cut(s)	695
GluI	GCNGC	3 cut(s)	7, 109, 160
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	3 cut(s)	102, 190, 353
HapII	CCGG	3 cut(s)	59, 135, 191
Hin1II	CATG	7 cut(s)	107, 456, 599, 692, 704, 752, 770
HinfI	GANTC	2 cut(s)	466, 473
HpaII	CCGG	3 cut(s)	59, 135, 191
HphI	GGTGA	5 cut(s)	48, 420, 480, 635, 866
Hpy166II	GTNNAC	2 cut(s)	393, 428
Hpy188I	TCNGA	3 cut(s)	19, 412, 531
Hpy188III	TCNNGA	4 cut(s)	238, 470, 689, 822
Hpy8I	GTNNAC	2 cut(s)	393, 428
HpyAV	CCTTC	6 cut(s)	22, 254, 291, 365, 634, 638
HpyCH4III	ACNGT	1 cut(s)	866
HpyCH4V	TGCA	8 cut(s)	9, 142, 162, 216, 481, 679, 880, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 114
HpyF3I	CTNAG	4 cut(s)	409, 418, 570, 583
Hsp92II	CATG	7 cut(s)	107, 456, 599, 692, 704, 752, 770
Ksp22I	TGATCA	2 cut(s)	652, 786
Kzo9I	GATC	6 cut(s)	526, 625, 652, 685, 691, 786
LmnI	GCTCC	3 cut(s)	114, 122, 603
Lsp1109I	GCAGC	2 cut(s)	95, 146
LweI	GCATC	1 cut(s)	877
MabI	ACCWGGT	1 cut(s)	588
MaeI	CTAG	1 cut(s)	695
MaeIII	GTNAC	2 cut(s)	54, 467
MalI	GATC	6 cut(s)	528, 627, 654, 687, 693, 788
MboI	GATC	6 cut(s)	526, 625, 652, 685, 691, 786
MboII	GAAGA	4 cut(s)	74, 77, 352, 355
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	3 cut(s)	178, 460, 790
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	7 cut(s)	101, 197, 217, 220, 355, 715, 802
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	6 cut(s)	71, 167, 185, 197, 459, 801
MslI	CAYNNNNRTG	1 cut(s)	765
Msp20I	TGGCCA	1 cut(s)	353
MspCI	CTTAAG	1 cut(s)	70
MspI	CCGG	3 cut(s)	59, 135, 191
MspR9I	CCNGG	5 cut(s)	192, 294, 590, 631, 828
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	4 cut(s)	294, 590, 631, 828
MwoI	GCNNNNNNNGC	2 cut(s)	108, 114
NciI	CCSGG	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	6 cut(s)	526, 625, 652, 685, 691, 786
NlaIII	CATG	7 cut(s)	107, 456, 599, 692, 704, 752, 770
NmuCI	GTSAC	2 cut(s)	54, 467
NspI	RCATGY	1 cut(s)	456
NspV	TTCGAA	1 cut(s)	79
PagI	TCATGA	1 cut(s)	688
PasI	CCCWGGG	1 cut(s)	630
PciI	ACATGT	1 cut(s)	452
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	473
PinAI	ACCGGT	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	8, 110, 161
PleI	GAGTC	1 cut(s)	474
PpsI	GAGTC	1 cut(s)	474
PscI	ACATGT	1 cut(s)	452
PsiI	TTATAA	1 cut(s)	903
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	4 cut(s)	292, 588, 629, 826
PspEI	GGTNACC	1 cut(s)	54
PspGI	CCWGG	4 cut(s)	292, 588, 629, 826
PspPI	GGNCC	1 cut(s)	824
PstI	CTGCAG	1 cut(s)	164
RsaI	GTAC	4 cut(s)	392, 400, 661, 863
RsaNI	GTAC	4 cut(s)	391, 399, 660, 862
RseI	CAYNNNNRTG	1 cut(s)	765
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	6 cut(s)	71, 167, 185, 197, 459, 801
SatI	GCNGC	3 cut(s)	7, 109, 160
Sau3AI	GATC	6 cut(s)	526, 625, 652, 685, 691, 786
Sau96I	GGNCC	1 cut(s)	824
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	5 cut(s)	192, 294, 590, 631, 828
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	9 cut(s)	119, 161, 173, 376, 410, 510, 536, 594, 608
SexAI	ACCWGGT	1 cut(s)	588
SfaNI	GCATC	1 cut(s)	877
SfcI	CTRYAG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	79
SinI	GGWCC	1 cut(s)	824
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	3 cut(s)	178, 460, 790
SsiI	CCGC	1 cut(s)	491
SspI	AATATT	1 cut(s)	729
SspMI	CTAG	1 cut(s)	695
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	5 cut(s)	190, 292, 588, 629, 826
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	866
TaqI	TCGA	4 cut(s)	79, 464, 510, 807
TasI	AATT	3 cut(s)	178, 460, 790
TatI	WGTACW	4 cut(s)	390, 398, 659, 861
TfiI	GAWTC	1 cut(s)	473
Tru1I	TTAA	6 cut(s)	71, 167, 185, 197, 459, 801
Tru9I	TTAA	6 cut(s)	71, 167, 185, 197, 459, 801
TscAI	CASTG	3 cut(s)	483, 742, 871
TseFI	GTSAC	2 cut(s)	54, 467
TseI	GCWGC	3 cut(s)	6, 108, 159
Tsp45I	GTSAC	2 cut(s)	54, 467
TspDTI	ATGAA	4 cut(s)	236, 321, 584, 734
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	3 cut(s)	483, 742, 871
Vha464I	CTTAAG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	824
XceI	RCATGY	1 cut(s)	456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	596
XspI	CTAG	1 cut(s)	695
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.