Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

64609816 .. 64611161

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGGGTGTAAGTCATCAGATAGTCCTAAGCCAAAGCCAAAGCAGAGAAAGGGATTATGGTCACCTGAAGAAGACCAAAGGCTGAGAAACTACATTCTCAAACATGGCCATGGCTGCTGGAGTTCTGTCCCCATAAACGCCGGTTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATAAATTACTTAAGGCCAGGGTGGTCTCAGATTGCACAACATTTGCCTGGAAGGACAGACAATGAGATAAAAAACTTCTGGCATTCTTATTTGAAGAAGAAAGTGGCCAAAGATAATGAAGATCAAGATCAAATGGAACCAGCTCAAAGCAAGTCTCAGTACACAAGTACTTCAAGCTCAGATCATAACTTAGATCAGCCTTCACCATGTTCCGAAAAGCTCACAAGCACCCAAATTCCAAGTTACAATGAATCTCCAATATTAGTTCCACAGATTGATCATCAAAGTCAAAGACCTAGCCCCTTGCCAAAGATTTTGTTTGCTGAGTGGCTTTCACTAGACCATGTTCAAGGGGGTAGCATTGGAAACAATACTGGCATTGATCAACATGACTATAATCCGCGAGCAGATCATGGGCTTGGACACAGTTACTCATTCAATAATGAGGCAACATTTGGCAGTAGTGGCTTCCATCATGGTCCGGCTACACATGAGATAATGAACTCACGATTTAGATATGATCCTCAGGATCAGATTCCAGGAACTGGGTTTGCTGATTTTATATCTGGGGGTGATTTATGTAGTGATTTTACCTTGCATGATGATGTGATGTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

266

Amino Acids

30.02

Weight (kDa)

6.52

Isoelectric Point (pI)

54.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	3e-14	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 66	2.9e-07	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 91	3.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	725
AccII	CGCG	1 cut(s)	583
AciI	CCGC	1 cut(s)	581
AclWI	GGATC	2 cut(s)	695, 717
AcoI	YGGCCR	2 cut(s)	106, 285
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	341, 349
AfiI	CCNNNNNNNGG	1 cut(s)	725
AflII	CTTAAG	1 cut(s)	190
AgsI	TTSAA	4 cut(s)	274, 354, 530, 619
AjnI	CCWGG	3 cut(s)	196, 226, 718
AluBI	AGCT	4 cut(s)	165, 323, 357, 400
AluI	AGCT	4 cut(s)	165, 323, 357, 400
Alw26I	GTCTC	2 cut(s)	210, 339
AlwI	GGATC	2 cut(s)	695, 717
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	3 cut(s)	106, 194, 285
ApeKI	GCWGC	2 cut(s)	114, 165
ApoI	RAATTY	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	659
AsuHPI	GGTGA	3 cut(s)	54, 375, 764
AvaII	GGWCC	1 cut(s)	659
AxyI	CCTNAGG	1 cut(s)	705
BalI	TGGCCA	2 cut(s)	108, 287
BbsI	GAAGAC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	101, 152
BccI	CCATC	1 cut(s)	660
BciT130I	CCWGG	3 cut(s)	198, 228, 720
BclI	TGATCA	2 cut(s)	457, 562
BcoDI	GTCTC	2 cut(s)	210, 339
BfaI	CTAG	2 cut(s)	477, 518
BfmI	CTRYAG	1 cut(s)	166
BfrI	CTTAAG	1 cut(s)	190
BisI	GCNGC	2 cut(s)	115, 166
BlsI	GCNGC	2 cut(s)	116, 167
BmcAI	AGTACT	1 cut(s)	349
Bme1390I	CCNGG	3 cut(s)	198, 228, 720
Bme18I	GGWCC	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	659
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	3 cut(s)	198, 228, 720
BmrI	ACTGGG	1 cut(s)	735
BmuI	ACTGGG	1 cut(s)	735
BpiI	GAAGAC	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	109, 197
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	559, 730
Bse21I	CCTNAGG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	3 cut(s)	198, 228, 720
BseDI	CCNNGG	2 cut(s)	109, 197
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMII	CTCAG	6 cut(s)	74, 221, 350, 372, 495, 719
BseNI	ACTGG	2 cut(s)	559, 730
BseXI	GCAGC	2 cut(s)	101, 152
Bsh1236I	CGCG	1 cut(s)	583
BshFI	GGCC	3 cut(s)	108, 196, 287
BsiSI	CCGG	2 cut(s)	141, 662
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	2 cut(s)	210, 339
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	108, 196, 287
Bso31I	GGTCTC	1 cut(s)	210
Bsp143I	GATC	9 cut(s)	301, 307, 361, 373, 457, 562, 589, 700, 709
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	581
BspANI	GGCC	3 cut(s)	108, 196, 287
BspCNI	CTCAG	6 cut(s)	75, 220, 349, 371, 496, 718
BspFNI	CGCG	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	318
BspMAI	CTGCAG	1 cut(s)	170
BspPI	GGATC	2 cut(s)	695, 717
BspTI	CTTAAG	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	559, 730
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	109, 197
BssMI	GATC	9 cut(s)	301, 307, 361, 373, 457, 562, 589, 700, 709
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	3 cut(s)	198, 228, 720
Bst4CI	ACNGT	1 cut(s)	608
BstAFI	CTTAAG	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	8 cut(s)	27, 83, 207, 336, 358, 370, 504, 705
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	583
BstKTI	GATC	9 cut(s)	304, 310, 364, 376, 460, 565, 592, 703, 712
BstMAI	GTCTC	2 cut(s)	210, 339
BstMBI	GATC	9 cut(s)	301, 307, 361, 373, 457, 562, 589, 700, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 645
BstNI	CCWGG	3 cut(s)	198, 228, 720
BstPI	GGTNACC	1 cut(s)	60
BstSCI	CCNGG	3 cut(s)	196, 226, 718
BstSFI	CTRYAG	1 cut(s)	166
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	101, 152
BstV2I	GAAGAC	1 cut(s)	78
Bsu36I	CCTNAGG	1 cut(s)	705
BsuRI	GGCC	3 cut(s)	108, 196, 287
BtgI	CCRYGG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	585
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	659
Csp6I	GTAC	2 cut(s)	340, 348
CviAII	CATG	9 cut(s)	104, 110, 387, 524, 569, 593, 656, 671, 779
CviQI	GTAC	2 cut(s)	340, 348
DdeI	CTNAG	8 cut(s)	27, 83, 207, 336, 358, 370, 504, 705
DpnI	GATC	9 cut(s)	303, 309, 363, 375, 459, 564, 591, 702, 711
DpnII	GATC	9 cut(s)	301, 307, 361, 373, 457, 562, 589, 700, 709
EaeI	YGGCCR	2 cut(s)	106, 285
Eco130I	CCWWGG	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	705
Eco91I	GGTNACC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	60
EcoRII	CCWGG	3 cut(s)	196, 226, 718
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	9 cut(s)	107, 113, 390, 527, 572, 596, 659, 674, 782
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	9 cut(s)	103, 109, 386, 523, 568, 592, 655, 670, 778
FbaI	TGATCA	2 cut(s)	457, 562
Fnu4HI	GCNGC	2 cut(s)	115, 166
Fsp4HI	GCNGC	2 cut(s)	115, 166
FspBI	CTAG	2 cut(s)	477, 518
GluI	GCNGC	2 cut(s)	115, 166
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	108, 196, 287
HapII	CCGG	2 cut(s)	141, 662
Hin1II	CATG	9 cut(s)	107, 113, 390, 527, 572, 596, 659, 674, 782
HinfI	GANTC	2 cut(s)	431, 715
HpaII	CCGG	2 cut(s)	141, 662
HphI	GGTGA	3 cut(s)	54, 375, 764
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	5 cut(s)	19, 210, 361, 394, 714
Hpy188III	TCNNGA	3 cut(s)	305, 687, 707
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	225, 390
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4V	TGCA	4 cut(s)	148, 168, 215, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 645
HpyF3I	CTNAG	8 cut(s)	27, 83, 207, 336, 358, 370, 504, 705
Hsp92II	CATG	9 cut(s)	107, 113, 390, 527, 572, 596, 659, 674, 782
Ksp22I	TGATCA	2 cut(s)	457, 562
Kzo9I	GATC	9 cut(s)	301, 307, 361, 373, 457, 562, 589, 700, 709
Lsp1109I	GCAGC	2 cut(s)	101, 152
MaeI	CTAG	2 cut(s)	477, 518
MaeIII	GTNAC	3 cut(s)	60, 422, 608
MalI	GATC	9 cut(s)	303, 309, 363, 375, 459, 564, 591, 702, 711
MboI	GATC	9 cut(s)	301, 307, 361, 373, 457, 562, 589, 700, 709
MboII	GAAGA	5 cut(s)	80, 83, 286, 289, 311
MlsI	TGGCCA	2 cut(s)	108, 287
MluCI	AATT	2 cut(s)	184, 414
MluNI	TGGCCA	2 cut(s)	108, 287
MnlI	CCTC	2 cut(s)	619, 714
Mox20I	TGGCCA	2 cut(s)	108, 287
MscI	TGGCCA	2 cut(s)	108, 287
MseI	TTAA	2 cut(s)	173, 191
MslI	CAYNNNNRTG	2 cut(s)	108, 783
Msp20I	TGGCCA	2 cut(s)	108, 287
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	2 cut(s)	141, 662
MspR9I	CCNGG	3 cut(s)	198, 228, 720
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	3 cut(s)	198, 228, 720
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	2 cut(s)	114, 645
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	9 cut(s)	301, 307, 361, 373, 457, 562, 589, 700, 709
NlaIII	CATG	9 cut(s)	107, 113, 390, 527, 572, 596, 659, 674, 782
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	431, 715
PflMI	CCANNNNNTGG	1 cut(s)	725
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	2 cut(s)	116, 167
Psp6I	CCWGG	3 cut(s)	196, 226, 718
PspEI	GGTNACC	1 cut(s)	60
PspGI	CCWGG	3 cut(s)	196, 226, 718
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	170
PstNI	CAGNNNCTG	1 cut(s)	725
RsaI	GTAC	2 cut(s)	341, 349
RsaNI	GTAC	2 cut(s)	340, 348
RseI	CAYNNNNRTG	2 cut(s)	108, 783
SaqAI	TTAA	2 cut(s)	173, 191
SatI	GCNGC	2 cut(s)	115, 166
Sau3AI	GATC	9 cut(s)	301, 307, 361, 373, 457, 562, 589, 700, 709
Sau96I	GGNCC	1 cut(s)	659
ScaI	AGTACT	1 cut(s)	349
ScrFI	CCNGG	3 cut(s)	198, 228, 720
SetI	ASST	8 cut(s)	67, 167, 179, 325, 359, 402, 478, 776
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	659
SmiMI	CAYNNNNRTG	2 cut(s)	108, 783
SmlI	CTYRAG	1 cut(s)	190
SmoI	CTYRAG	1 cut(s)	190
Sse9I	AATT	2 cut(s)	184, 414
SsiI	CCGC	1 cut(s)	581
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	2 cut(s)	477, 518
StyD4I	CCNGG	3 cut(s)	196, 226, 718
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	608
TasI	AATT	2 cut(s)	184, 414
TatI	WGTACW	2 cut(s)	339, 347
TfiI	GAWTC	2 cut(s)	431, 715
Tru1I	TTAA	2 cut(s)	173, 191
Tru9I	TTAA	2 cut(s)	173, 191
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	2 cut(s)	114, 165
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	3 cut(s)	312, 444, 695
Van91I	CCANNNNNTGG	1 cut(s)	725
Vha464I	CTTAAG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	414
XspI	CTAG	2 cut(s)	477, 518
ZrmI	AGTACT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.