Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010116

Physical Location & Seq

Genomic Coordinates Forward (+)

28590821 .. 28593075

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G293700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGCTGCAAGTCATCAGATAAGCCAAAGCCAAAGCACAGAAAGGGATTGTGGTCACCAGAAGAAGACCAAAGGCTTCGAAACTACATCCTCAAGCATGGCCATGGCTGCTGGAGCTCTGTTCCGATAAACGCCGGTTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATAAATTACTTGAGGCCGGGGTTAAAGCGAGGGACATTTAGCAAACAAGAGGAGGAGACAATCCTGACCCTTCATCATATGTTAGGGAACAAGTGGTCTCAAATTGCACAGCATTTGCCAGGAAGAACAGACAATGAGATAAAAAATTACTGGCATTCTTATTTGAAGAAGAAAGTGGCCAAAGCTGAAGAAATCATGGAAGGCCAAAGCAAATCTCAATATACAAGTACTACTTCAAGCTCAGACAACTTAGAGTGTTCACCATCTCCCCACAAGCCCACAACCTGTATTAATCCAAGTTATGAGTCAGTGGAAAAATCACCAACATTAATTCCCCAGACTGGTGATCAAACTCACAGAAGCCCTTTACCAAAGATTTTGTTTGCTGAGTGGCTTTCCTTAGACCATGTTCATGGTGGAAGCTATGCAAATAATATCAGTGAGGCTGGGGTTTCCAGGGAAGGCTTTGATCACAATTCTAATAATCTTCAAGCAGATCATGCTCTAGGACATAATTTTTTATTGAACAATGAAGGAGCATTTGAGAACGGTTTTCATTATGGGCTAAGCCATCATGGAGCGGCTACTGAGATGATCAATTCATCACAGTTTAAGTTTGAGGATCAGATTTCAGGACCTGGGTTTGTTGATTTTATATCAGGGGGTGATATGTGTAGTGATTTCAACTTGCACAACGATGTAATGTATTTTTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010017 GO:0010018 GO:0010033 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

298

Amino Acids

33.53

Weight (kDa)

7.3

Isoelectric Point (pI)

56.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25560 AT4G25560 AT5G52260
fragaria_vesca	FvH4_7g29420 FvH4_7g29420
malus_domestica	MD01G1200200.v1.1 MD07G1268000.v1.1
prunus_persica	Prupe.2G293700_v2.0.a1
pyrus_communis	pycom01g21020
rosa_chinensis	RchiOBHm_Chr1g0377201
rosa_laevigata	RLG00000026537
rosa_multiflora	Rmu_ssc0000155.1_g000011
rosa_roxburghii	Rroxscaffold_4G00281390
rosa_rugosa	Rorug01G0402000
rosa_samantha	Rh1AG419400 Rh1BG378500 Rh1CG082700 Rh1CG392500 Rh1DG089200 Rh1DG409100
rosa_wichuraiana	Rw1G036790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	888
AccBSI	CCGCTC	1 cut(s)	755
AciI	CCGC	1 cut(s)	755
AclWI	GGATC	1 cut(s)	804
AcoI	YGGCCR	2 cut(s)	100, 351
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	5 cut(s)	340, 411, 665, 700, 859
AjnI	CCWGG	3 cut(s)	292, 629, 811
AluBI	AGCT	5 cut(s)	117, 159, 359, 414, 597
AluI	AGCT	5 cut(s)	117, 159, 359, 414, 597
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	224, 276
AlwI	GGATC	1 cut(s)	804
AlwNI	CAGNNNCTG	1 cut(s)	812
AoxI	GGCC	4 cut(s)	100, 188, 351, 376
ApeKI	GCWGC	3 cut(s)	6, 108, 159
AseI	ATTAAT	2 cut(s)	465, 503
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	5 cut(s)	48, 426, 486, 530, 851
AsuII	TTCGAA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	809
BalI	TGGCCA	2 cut(s)	102, 353
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	95, 146
BccI	CCATC	2 cut(s)	445, 753
BciT130I	CCWGG	3 cut(s)	294, 631, 813
BclI	TGATCA	3 cut(s)	520, 643, 768
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	224, 276
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	4 cut(s)	7, 109, 160, 756
BlpI	GCTNAGC	1 cut(s)	740
BlsI	GCNGC	4 cut(s)	8, 110, 161, 757
BmcAI	AGTACT	1 cut(s)	403
Bme1390I	CCNGG	4 cut(s)	192, 294, 631, 813
Bme18I	GGWCC	1 cut(s)	809
BmgT120I	GGNCC	1 cut(s)	809
BmrFI	CCNGG	4 cut(s)	192, 294, 631, 813
BpiI	GAAGAC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	740
Bpu14I	TTCGAA	1 cut(s)	79
BpuEI	CTTGAG	2 cut(s)	77, 205
BpuMI	CCSGG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	103, 191, 630, 812
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	329, 520
BseBI	CCWGG	3 cut(s)	294, 631, 813
BseDI	CCNNGG	4 cut(s)	103, 191, 630, 812
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	3 cut(s)	429, 552, 753
BseNI	ACTGG	2 cut(s)	329, 520
BseRI	GAGGAG	2 cut(s)	239, 242
BseXI	GCAGC	2 cut(s)	95, 146
BseYI	CCCAGC	1 cut(s)	620
BshFI	GGCC	4 cut(s)	102, 190, 353, 378
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	135, 191
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	2 cut(s)	224, 276
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	102, 190, 353, 378
Bso31I	GGTCTC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	5 cut(s)	520, 643, 670, 768, 796
Bsp1720I	GCTNAGC	1 cut(s)	740
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	1 cut(s)	755
BspANI	GGCC	4 cut(s)	102, 190, 353, 378
BspCNI	CTCAG	3 cut(s)	428, 553, 754
BspMAI	CTGCAG	1 cut(s)	164
BspPI	GGATC	1 cut(s)	804
BspT104I	TTCGAA	1 cut(s)	79
BspTNI	GGTCTC	1 cut(s)	276
BsrBI	CCGCTC	1 cut(s)	755
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	329, 520
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	4 cut(s)	103, 191, 630, 812
BssMI	GATC	5 cut(s)	520, 643, 670, 768, 796
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	3 cut(s)	294, 631, 813
Bst4CI	ACNGT	2 cut(s)	725, 783
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstBI	TTCGAA	1 cut(s)	79
BstDEI	CTNAG	6 cut(s)	415, 424, 561, 574, 740, 762
BstDSI	CCRYGG	1 cut(s)	103
BstEII	GGTNACC	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	5 cut(s)	523, 646, 673, 771, 799
BstMAI	GTCTC	2 cut(s)	224, 276
BstMBI	GATC	5 cut(s)	520, 643, 670, 768, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 114, 674
BstNI	CCWGG	3 cut(s)	294, 631, 813
BstPI	GGTNACC	1 cut(s)	54
BstSCI	CCNGG	4 cut(s)	190, 292, 629, 811
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	95, 146
BstV2I	GAAGAC	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	587
BsuRI	GGCC	4 cut(s)	102, 190, 353, 378
BtgI	CCRYGG	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	2 cut(s)	489, 619
CaiI	CAGNNNCTG	1 cut(s)	812
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	7 cut(s)	98, 104, 370, 581, 587, 674, 749
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	6 cut(s)	415, 424, 561, 574, 740, 762
DpnI	GATC	5 cut(s)	522, 645, 672, 770, 798
DpnII	GATC	5 cut(s)	520, 643, 670, 768, 796
EaeI	YGGCCR	2 cut(s)	100, 351
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	381
Eco91I	GGTNACC	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	809
EcoO65I	GGTNACC	1 cut(s)	54
EcoRII	CCWGG	3 cut(s)	292, 629, 811
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	7 cut(s)	101, 107, 373, 584, 590, 677, 752
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	7 cut(s)	97, 103, 369, 580, 586, 673, 748
FauNDI	CATATG	1 cut(s)	252
FbaI	TGATCA	3 cut(s)	520, 643, 768
Fnu4HI	GCNGC	4 cut(s)	7, 109, 160, 756
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	4 cut(s)	7, 109, 160, 756
FspBI	CTAG	1 cut(s)	680
GluI	GCNGC	4 cut(s)	7, 109, 160, 756
GsaI	CCCAGC	1 cut(s)	624
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	4 cut(s)	102, 190, 353, 378
HapII	CCGG	2 cut(s)	135, 191
Hin1II	CATG	7 cut(s)	101, 107, 373, 584, 590, 677, 752
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	2 cut(s)	135, 191
HphI	GGTGA	5 cut(s)	48, 426, 486, 530, 851
Hpy166II	GTNNAC	1 cut(s)	434
Hpy188I	TCNGA	4 cut(s)	19, 126, 418, 801
Hpy188III	TCNNGA	2 cut(s)	238, 807
Hpy8I	GTNNAC	1 cut(s)	434
HpyAV	CCTTC	4 cut(s)	254, 368, 629, 701
HpyCH4III	ACNGT	2 cut(s)	725, 783
HpyCH4V	TGCA	6 cut(s)	9, 142, 162, 281, 602, 865
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 114, 674
HpyF3I	CTNAG	6 cut(s)	415, 424, 561, 574, 740, 762
Hsp92II	CATG	7 cut(s)	101, 107, 373, 584, 590, 677, 752
Ksp22I	TGATCA	3 cut(s)	520, 643, 768
Kzo9I	GATC	5 cut(s)	520, 643, 670, 768, 796
LmnI	GCTCC	3 cut(s)	114, 710, 752
Lsp1109I	GCAGC	2 cut(s)	95, 146
MaeI	CTAG	1 cut(s)	680
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	5 cut(s)	522, 645, 672, 770, 798
MbiI	CCGCTC	1 cut(s)	755
MboI	GATC	5 cut(s)	520, 643, 670, 768, 796
MboII	GAAGA	7 cut(s)	74, 77, 309, 352, 355, 374, 653
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	2 cut(s)	102, 353
MluCI	AATT	7 cut(s)	178, 276, 319, 504, 649, 688, 772
MluNI	TGGCCA	2 cut(s)	102, 353
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	7 cut(s)	101, 180, 197, 217, 220, 610, 787
Mox20I	TGGCCA	2 cut(s)	102, 353
MscI	TGGCCA	2 cut(s)	102, 353
MseI	TTAA	5 cut(s)	167, 197, 465, 503, 786
MslI	CAYNNNNRTG	3 cut(s)	102, 585, 870
Msp20I	TGGCCA	2 cut(s)	102, 353
MspI	CCGG	2 cut(s)	135, 191
MspR9I	CCNGG	4 cut(s)	192, 294, 631, 813
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	3 cut(s)	294, 631, 813
MwoI	GCNNNNNNNGC	3 cut(s)	108, 114, 674
NciI	CCSGG	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	5 cut(s)	520, 643, 670, 768, 796
NlaIII	CATG	7 cut(s)	101, 107, 373, 584, 590, 677, 752
NmuCI	GTSAC	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	79
PctI	GAATGC	1 cut(s)	328
PkrI	GCNGC	4 cut(s)	8, 110, 161, 757
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	809
PshBI	ATTAAT	2 cut(s)	465, 503
PsiI	TTATAA	1 cut(s)	888
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	809
Psp6I	CCWGG	3 cut(s)	292, 629, 811
PspEI	GGTNACC	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	620
PspGI	CCWGG	3 cut(s)	292, 629, 811
PspPI	GGNCC	1 cut(s)	809
PspPPI	RGGWCCY	1 cut(s)	809
PstI	CTGCAG	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	812
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	3 cut(s)	102, 585, 870
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	5 cut(s)	167, 197, 465, 503, 786
SatI	GCNGC	4 cut(s)	7, 109, 160, 756
Sau3AI	GATC	5 cut(s)	520, 643, 670, 768, 796
Sau96I	GGNCC	1 cut(s)	809
ScaI	AGTACT	1 cut(s)	403
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	4 cut(s)	192, 294, 631, 813
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	8 cut(s)	119, 161, 173, 361, 416, 461, 599, 814
SfcI	CTRYAG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	79
SinI	GGWCC	1 cut(s)	809
SmiMI	CAYNNNNRTG	3 cut(s)	102, 585, 870
SmlI	CTYRAG	2 cut(s)	92, 184
SmoI	CTYRAG	2 cut(s)	92, 184
Sse9I	AATT	7 cut(s)	178, 276, 319, 504, 649, 688, 772
SsiI	CCGC	1 cut(s)	755
SspMI	CTAG	1 cut(s)	680
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	4 cut(s)	190, 292, 629, 811
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	725, 783
TaqI	TCGA	1 cut(s)	79
TasI	AATT	7 cut(s)	178, 276, 319, 504, 649, 688, 772
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	1 cut(s)	758
Tru1I	TTAA	5 cut(s)	167, 197, 465, 503, 786
Tru9I	TTAA	5 cut(s)	167, 197, 465, 503, 786
TscAI	CASTG	2 cut(s)	489, 619
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	3 cut(s)	6, 108, 159
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	5 cut(s)	236, 575, 719, 720, 765
TspRI	CASTG	2 cut(s)	489, 619
VpaK11BI	GGWCC	1 cut(s)	809
VspI	ATTAAT	2 cut(s)	465, 503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XspI	CTAG	1 cut(s)	680
ZrmI	AGTACT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.