AT4G25790

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011655
Physical Location & Seq
Reverse (-)
13122047 .. 13123354
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G25790.1

Sequence Viewer

Length: 633 bp
ATGGCGACCACAACATCAACCCAAGCCATAGTTTTCGCAATCGCCCTTTTCTTGGTCGCCATCCAAGCCGTTCATGCAGACTATTACCGGCACCGCCCACAGCGACCTATAACCCCGAGCCCTCCTCCCTACGTTGCAAAGCCCCAGCCGCTCCCAACTCCCAGCCCCAAACCTATCCTTTATCAGCCTCCTCCCACATACCAACCACCCACGGGCTCGTTCGAACAACAATTTCTTGATCCACATAATACTGTCCGAGGCGGTCTAGGTTTGCCTCCACTGGTGTGGGACGTAAAGATCGCAAGCTATGCAACATGGTGGGCTAACCAGAGGAGATACGACTGCTCCTTAACCCACTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCTCAGACTTTACATCGACTTTCGCAGTGGAGTCATGGACTGTGGAGGCTAAGTCCTACAACCACATGACCAACACGTGTGAAGGAGATGGTATGTGTGGTCACTACACTCAGATCGTGTGGCGTGAAACCAGGCGCCTAGGTTGCGCTAGAGTTGTCTGCGAGAACGGCGCAGGAGTTTTCATCACTTGCAACTACGACCCTCCGGGTAACTACGTTGGGGAGAAGCCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

210

Amino Acids

23.42

Weight (kDa)

6.99

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 79 - 198 4.8e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 90, 531
AccBSI CCGCTC 1 cut(s) 151
AciI CCGC 3 cut(s) 94, 149, 261
AclWI GGATC 1 cut(s) 233
AcvI CACGTG 1 cut(s) 474
AcyI GRCGYC 1 cut(s) 532
AfiI CCNNNNNNNGG 2 cut(s) 52, 212
AflIII ACRYGT 2 cut(s) 471, 473
AjnI CCWGG 1 cut(s) 527
AleI CACNNNNGTG 1 cut(s) 283
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
AlwI GGATC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 1 cut(s) 364
Asp700I GAANNNNTTC 1 cut(s) 383
AspA2I CCTAGG 1 cut(s) 535
AspLEI GCGC 3 cut(s) 534, 545, 569
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 603
AsuHPI GGTGA 1 cut(s) 386
AsuII TTCGAA 1 cut(s) 222
AvaI CYCGRG 1 cut(s) 115
AvrII CCTAGG 1 cut(s) 535
BanI GGYRCC 2 cut(s) 90, 531
BanII GRGCYC 2 cut(s) 122, 218
BbrPI CACGTG 1 cut(s) 474
BccI CCATC 2 cut(s) 68, 479
BceAI ACGGC 2 cut(s) 53, 580
BciT130I CCWGG 1 cut(s) 529
BcnI CCSGG 1 cut(s) 603
BfaI CTAG 3 cut(s) 266, 536, 546
BfoI RGCGCY 1 cut(s) 535
BisI GCNGC 1 cut(s) 149
BlnI CCTAGG 1 cut(s) 535
BlsI GCNGC 1 cut(s) 150
Bme1390I CCNGG 2 cut(s) 529, 603
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 2 cut(s) 92, 533
BmrFI CCNGG 2 cut(s) 529, 603
BplI GAGNNNNNCTC 2 cut(s) 109, 141
Bpu14I TTCGAA 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 210, 256, 535
BsaXI ACNNNNNCTCC 4 cut(s) 329, 359, 434, 464
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 212
Bse118I RCCGGY 2 cut(s) 87, 362
Bse1I ACTGG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 529
BseDI CCNNGG 3 cut(s) 210, 256, 535
BseGI GGATG 1 cut(s) 60
BseLI CCNNNNNNNGG 2 cut(s) 52, 212
BseMII CTCAG 2 cut(s) 414, 521
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 3 cut(s) 114, 180, 346
BseYI CCCAGC 2 cut(s) 144, 161
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 366
BshNI GGYRCC 2 cut(s) 90, 531
BsiEI CGRYCG 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 3 cut(s) 88, 363, 602
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 52, 212
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 366
BsoBI CYCGRG 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 122, 218
Bsp143I GATC 3 cut(s) 238, 297, 510
BspACI CCGC 3 cut(s) 94, 149, 261
BspANI GGCC 1 cut(s) 366
BspCNI CTCAG 2 cut(s) 413, 520
BspLI GGNNCC 2 cut(s) 92, 533
BspPI GGATC 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 222
BspT107I GGYRCC 2 cut(s) 90, 531
BsrBI CCGCTC 1 cut(s) 151
BsrFI RCCGGY 2 cut(s) 87, 362
BsrI ACTGG 1 cut(s) 285
BssAI RCCGGY 2 cut(s) 87, 362
BssECI CCNNGG 3 cut(s) 210, 256, 535
BssMI GATC 3 cut(s) 238, 297, 510
BssNI GRCGYC 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 535
Bst2UI CCWGG 1 cut(s) 529
Bst4CI ACNGT 3 cut(s) 253, 374, 439
BstACI GRCGYC 1 cut(s) 532
BstAPI GCANNNNNTGC 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 474
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 3 cut(s) 400, 447, 507
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 60
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 3 cut(s) 534, 545, 569
BstKTI GATC 3 cut(s) 241, 300, 513
BstMBI GATC 3 cut(s) 238, 297, 510
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 6 cut(s) 65, 74, 148, 308, 540, 564
BstNI CCWGG 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 527, 601
BstXI CCANNNNNNTGG 1 cut(s) 285
BsuRI GGCC 1 cut(s) 366
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 2 cut(s) 278, 429
Cac8I GCNNGC 1 cut(s) 304
CfoI GCGC 3 cut(s) 534, 545, 569
Cfr10I RCCGGY 2 cut(s) 87, 362
Cfr13I GGNCC 1 cut(s) 365
CviAII CATG 4 cut(s) 74, 315, 432, 463
DdeI CTNAG 3 cut(s) 400, 447, 507
DinI GGCGCC 1 cut(s) 533
DpnI GATC 3 cut(s) 240, 299, 512
DpnII GATC 3 cut(s) 238, 297, 510
Eco130I CCWWGG 1 cut(s) 535
Eco24I GRGCYC 2 cut(s) 122, 218
Eco72I CACGTG 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 535
EcoT38I GRGCYC 2 cut(s) 122, 218
EgeI GGCGCC 1 cut(s) 533
EheI GGCGCC 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 535
FaeI CATG 4 cut(s) 77, 318, 435, 466
FaqI GGGAC 1 cut(s) 302
FatI CATG 4 cut(s) 73, 314, 431, 462
Fnu4HI GCNGC 1 cut(s) 149
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 2 cut(s) 122, 218
Fsp4HI GCNGC 1 cut(s) 149
FspBI CTAG 3 cut(s) 266, 536, 546
GlaI GCGC 3 cut(s) 533, 544, 568
GluI GCNGC 1 cut(s) 149
GsaI CCCAGC 2 cut(s) 148, 165
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 1 cut(s) 366
HapII CCGG 3 cut(s) 88, 363, 602
HhaI GCGC 3 cut(s) 534, 545, 569
Hin1I GRCGYC 1 cut(s) 532
Hin1II CATG 4 cut(s) 77, 318, 435, 466
Hin6I GCGC 3 cut(s) 532, 543, 567
HinP1I GCGC 3 cut(s) 532, 543, 567
HinfI GANTC 1 cut(s) 428
HpaII CCGG 3 cut(s) 88, 363, 602
HphI GGTGA 1 cut(s) 386
Hpy188I TCNGA 3 cut(s) 257, 403, 510
Hpy188III TCNNGA 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 3 cut(s) 253, 374, 439
HpyCH4IV ACGT 4 cut(s) 132, 291, 473, 612
HpyCH4V TGCA 4 cut(s) 77, 137, 311, 588
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 74, 148, 308, 540, 564
HpyF3I CTNAG 3 cut(s) 400, 447, 507
HpySE526I ACGT 4 cut(s) 132, 291, 473, 612
Hsp92I GRCGYC 1 cut(s) 532
Hsp92II CATG 4 cut(s) 77, 318, 435, 466
HspAI GCGC 3 cut(s) 532, 543, 567
KasI GGCGCC 1 cut(s) 531
Kzo9I GATC 3 cut(s) 238, 297, 510
LmnI GCTCC 2 cut(s) 156, 350
MaeI CTAG 3 cut(s) 266, 536, 546
MaeII ACGT 4 cut(s) 132, 291, 473, 612
MaeIII GTNAC 2 cut(s) 497, 605
MalI GATC 3 cut(s) 240, 299, 512
MbiI CCGCTC 1 cut(s) 151
MboI GATC 3 cut(s) 238, 297, 510
MhlI GDGCHC 2 cut(s) 122, 218
MluCI AATT 1 cut(s) 230
Mly113I GGCGCC 1 cut(s) 532
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 9 cut(s) 132, 135, 198, 201, 251, 285, 324, 436, 609
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 283
MspI CCGG 3 cut(s) 88, 363, 602
MspR9I CCNGG 2 cut(s) 529, 603
MvaI CCWGG 1 cut(s) 529
MwoI GCNNNNNNNGC 6 cut(s) 65, 74, 148, 308, 540, 564
NarI GGCGCC 1 cut(s) 532
NciI CCSGG 1 cut(s) 603
NdeII GATC 3 cut(s) 238, 297, 510
NlaIII CATG 4 cut(s) 77, 318, 435, 466
NlaIV GGNNCC 2 cut(s) 92, 533
NmuCI GTSAC 1 cut(s) 497
NspV TTCGAA 1 cut(s) 222
OliI CACNNNNGTG 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 383
PkrI GCNGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 436
PluTI GGCGCC 1 cut(s) 535
PmaCI CACGTG 1 cut(s) 474
PmlI CACGTG 1 cut(s) 474
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 527
PspCI CACGTG 1 cut(s) 474
PspFI CCCAGC 2 cut(s) 144, 161
PspGI CCWGG 1 cut(s) 527
PspN4I GGNNCC 2 cut(s) 92, 533
PspPI GGNCC 1 cut(s) 365
RseI CAYNNNNRTG 1 cut(s) 283
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 1 cut(s) 149
Sau3AI GATC 3 cut(s) 238, 297, 510
Sau96I GGNCC 1 cut(s) 365
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 529, 603
SduI GDGCHC 2 cut(s) 122, 218
SetI ASST 9 cut(s) 109, 135, 175, 271, 294, 308, 476, 541, 615
SfoI GGCGCC 1 cut(s) 533
SfuI TTCGAA 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 283
Sse9I AATT 1 cut(s) 230
SsiI CCGC 3 cut(s) 94, 149, 261
SspDI GGCGCC 1 cut(s) 531
SspMI CTAG 3 cut(s) 266, 536, 546
StyD4I CCNGG 2 cut(s) 527, 601
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 3 cut(s) 253, 374, 439
TaiI ACGT 4 cut(s) 135, 294, 476, 615
TaqI TCGA 3 cut(s) 222, 359, 413
TasI AATT 1 cut(s) 230
TauI GCSGC 1 cut(s) 151
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 285, 429
TseFI GTSAC 1 cut(s) 497
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 62, 568
TspRI CASTG 2 cut(s) 285, 429
XmaJI CCTAGG 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 3 cut(s) 266, 536, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.