Belongs to the CRISP family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25790 AT4G31470 AT5G57625 |
| fragaria_vesca | FvH4_3g11680 |
| malus_domestica | MD10G1239100.v1.1 |
| prunus_persica | Prupe.4G105300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0018951 |
| rosa_laevigata | RLG00000032410 |
| rosa_multiflora | Rmu_sc0000563.1_g000021 Rmu_sc0000563.1_g000022 Rmu_sc0037607.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00058920 Rroxscaffold_1G00073900 Rroxscaffold_1G00073940 |
| rosa_rugosa | Rorug05G0046800 |
| rosa_samantha | Rh5AG138600 Rh5BG137300 Rh5DG138100 |
| rosa_wichuraiana | Rw5G012280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 112 |
| AcoI | YGGCCR | 1 cut(s) | 50 |
| AcsI | RAATTY | 1 cut(s) | 248 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 198, 268 |
| AgsI | TTSAA | 1 cut(s) | 412 |
| AjnI | CCWGG | 1 cut(s) | 478 |
| AluBI | AGCT | 3 cut(s) | 145, 178, 408 |
| AluI | AGCT | 3 cut(s) | 145, 178, 408 |
| Alw21I | GWGCWC | 1 cut(s) | 361 |
| AlwI | GGATC | 1 cut(s) | 112 |
| AoxI | GGCC | 2 cut(s) | 50, 148 |
| ApoI | RAATTY | 1 cut(s) | 248 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 263 |
| AspLEI | GCGC | 1 cut(s) | 319 |
| AsuHPI | GGTGA | 1 cut(s) | 266 |
| BaeGI | GKGCMC | 1 cut(s) | 205 |
| BalI | TGGCCA | 1 cut(s) | 52 |
| Bbv12I | GWGCWC | 1 cut(s) | 361 |
| BccI | CCATC | 3 cut(s) | 61, 110, 385 |
| BciT130I | CCWGG | 1 cut(s) | 480 |
| BfaI | CTAG | 1 cut(s) | 179 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 73 |
| Bme1390I | CCNGG | 1 cut(s) | 480 |
| BmrFI | CCNGG | 1 cut(s) | 480 |
| BmsI | GCATC | 1 cut(s) | 289 |
| BsaJI | CCNNGG | 1 cut(s) | 478 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 198, 268 |
| Bse1I | ACTGG | 1 cut(s) | 290 |
| BseBI | CCWGG | 1 cut(s) | 480 |
| BseDI | CCNNGG | 1 cut(s) | 478 |
| BseGI | GGATG | 1 cut(s) | 102 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 198, 268 |
| BseNI | ACTGG | 1 cut(s) | 290 |
| BseRI | GAGGAG | 2 cut(s) | 20, 147 |
| BseSI | GKGCMC | 1 cut(s) | 205 |
| BshFI | GGCC | 2 cut(s) | 52, 150 |
| BsiHKAI | GWGCWC | 1 cut(s) | 361 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 198, 268 |
| BsnI | GGCC | 2 cut(s) | 52, 150 |
| Bsp1286I | GDGCHC | 2 cut(s) | 205, 361 |
| Bsp143I | GATC | 2 cut(s) | 117, 137 |
| BspANI | GGCC | 2 cut(s) | 52, 150 |
| BspPI | GGATC | 1 cut(s) | 112 |
| BsrI | ACTGG | 1 cut(s) | 290 |
| BssECI | CCNNGG | 1 cut(s) | 478 |
| BssMI | GATC | 2 cut(s) | 117, 137 |
| Bst2UI | CCWGG | 1 cut(s) | 480 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 1 cut(s) | 377 |
| BstDEI | CTNAG | 1 cut(s) | 63 |
| BstF5I | GGATG | 1 cut(s) | 102 |
| BstHHI | GCGC | 1 cut(s) | 319 |
| BstKTI | GATC | 2 cut(s) | 120, 140 |
| BstMBI | GATC | 2 cut(s) | 117, 137 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 73, 299, 314 |
| BstNI | CCWGG | 1 cut(s) | 480 |
| BstSCI | CCNGG | 1 cut(s) | 478 |
| BstSLI | GKGCMC | 1 cut(s) | 205 |
| BsuRI | GGCC | 2 cut(s) | 52, 150 |
| BtsCI | GGATG | 1 cut(s) | 102 |
| BtsI | GCAGTG | 1 cut(s) | 280 |
| BtsIMutI | CAGTG | 1 cut(s) | 280 |
| Cac8I | GCNNGC | 1 cut(s) | 377 |
| CfoI | GCGC | 1 cut(s) | 319 |
| CviJI | RGCY | 8 cut(s) | 52, 67, 76, 145, 150, 178, 408, 461 |
| CviKI_1 | RGCY | 8 cut(s) | 52, 67, 76, 145, 150, 178, 408, 461 |
| DdeI | CTNAG | 1 cut(s) | 63 |
| DpnI | GATC | 2 cut(s) | 119, 139 |
| DpnII | GATC | 2 cut(s) | 117, 137 |
| EaeI | YGGCCR | 1 cut(s) | 50 |
| EcoRII | CCWGG | 1 cut(s) | 478 |
| FaiI | YATR | 5 cut(s) | 363, 384, 471, 491, 505 |
| FokI | GGATG | 1 cut(s) | 89 |
| FspBI | CTAG | 1 cut(s) | 179 |
| GlaI | GCGC | 1 cut(s) | 318 |
| HaeIII | GGCC | 2 cut(s) | 52, 150 |
| HhaI | GCGC | 1 cut(s) | 319 |
| Hin6I | GCGC | 1 cut(s) | 317 |
| HinP1I | GCGC | 1 cut(s) | 317 |
| HindIII | AAGCTT | 1 cut(s) | 143 |
| HinfI | GANTC | 2 cut(s) | 169, 232 |
| HphI | GGTGA | 1 cut(s) | 266 |
| Hpy166II | GTNNAC | 1 cut(s) | 278 |
| Hpy188I | TCNGA | 1 cut(s) | 117 |
| Hpy8I | GTNNAC | 1 cut(s) | 278 |
| HpyAV | CCTTC | 2 cut(s) | 283, 406 |
| HpyCH4V | TGCA | 3 cut(s) | 302, 308, 379 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 73, 299, 314 |
| HpyF3I | CTNAG | 1 cut(s) | 63 |
| HspAI | GCGC | 1 cut(s) | 317 |
| Kzo9I | GATC | 2 cut(s) | 117, 137 |
| LmnI | GCTCC | 1 cut(s) | 428 |
| LpnPI | CCDG | 7 cut(s) | 34, 58, 119, 253, 271, 465, 492 |
| LweI | GCATC | 1 cut(s) | 289 |
| MaeI | CTAG | 1 cut(s) | 179 |
| MaeIII | GTNAC | 1 cut(s) | 329 |
| MalI | GATC | 2 cut(s) | 119, 139 |
| MboI | GATC | 2 cut(s) | 117, 137 |
| MhlI | GDGCHC | 2 cut(s) | 205, 361 |
| MlsI | TGGCCA | 1 cut(s) | 52 |
| MluCI | AATT | 5 cut(s) | 248, 337, 349, 453, 484 |
| MluNI | TGGCCA | 1 cut(s) | 52 |
| MlyI | GAGTC | 1 cut(s) | 178 |
| MnlI | CCTC | 8 cut(s) | 38, 41, 132, 161, 165, 168, 202, 393 |
| Mox20I | TGGCCA | 1 cut(s) | 52 |
| MroXI | GAANNNNTTC | 1 cut(s) | 263 |
| MscI | TGGCCA | 1 cut(s) | 52 |
| Msp20I | TGGCCA | 1 cut(s) | 52 |
| MspR9I | CCNGG | 1 cut(s) | 480 |
| MvaI | CCWGG | 1 cut(s) | 480 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 73, 299, 314 |
| NdeII | GATC | 2 cut(s) | 117, 137 |
| PdmI | GAANNNNTTC | 1 cut(s) | 263 |
| PfeI | GAWTC | 1 cut(s) | 232 |
| PleI | GAGTC | 1 cut(s) | 177 |
| PpsI | GAGTC | 1 cut(s) | 177 |
| Psp6I | CCWGG | 1 cut(s) | 478 |
| PspGI | CCWGG | 1 cut(s) | 478 |
| Sau3AI | GATC | 2 cut(s) | 117, 137 |
| SchI | GAGTC | 1 cut(s) | 178 |
| ScrFI | CCNGG | 1 cut(s) | 480 |
| SduI | GDGCHC | 2 cut(s) | 205, 361 |
| SetI | ASST | 7 cut(s) | 30, 147, 180, 264, 410, 417, 496 |
| SfaNI | GCATC | 1 cut(s) | 289 |
| Sse9I | AATT | 5 cut(s) | 248, 337, 349, 453, 484 |
| SspMI | CTAG | 1 cut(s) | 179 |
| StyD4I | CCNGG | 1 cut(s) | 478 |
| TasI | AATT | 5 cut(s) | 248, 337, 349, 453, 484 |
| TfiI | GAWTC | 1 cut(s) | 232 |
| TscAI | CASTG | 1 cut(s) | 280 |
| TspDTI | ATGAA | 1 cut(s) | 26 |
| TspRI | CASTG | 1 cut(s) | 280 |
| XapI | RAATTY | 1 cut(s) | 248 |
| XmnI | GAANNNNTTC | 1 cut(s) | 263 |
| XspI | CTAG | 1 cut(s) | 179 |