Rh5BG137300

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011655
Physical Location & Seq
Forward (+)
14080459 .. 14081264
806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG137300.1

Sequence Viewer

Length: 588 bp
ATGTTAATCTTCACAAACACCCATAACACATTGATCGATCTCTGTTTTTCTCCTATGGAAAACAAATCATTTTCAGTTGGGTTACTAATTAGAACCTTCCTCCTCCTTTCCACACTGTTTTGGCCATCTTTCTCACGCAGCTCACCCCATAAAACCTCCCCTACTCCCTCTTCTAACACCATTCAGCAGTACTTGATCCCTCACAACACTGAAAGATCAAAGCTCGGCCTCCCTCCTCTCAAATGGAGCAAGAAACTAGAGAGCTACGCTTCCTGGTGGGCCCGCCAAAGGCGAGAAGACTGCTCGTTGATTCATTCGAACAGCGAGTTCGGGGAGAACCTCTTCTGGGGGAGTGGACATGACTGGAAGCCGAGTGATGCAGTTAAAGCATGGGCAACAGAGAGTTGCTACTACAACCACAAGACTAACTCTTGTAATCAGAAAAAGGATTGCTTGCATTATACTCAAATGGTTTGGAAGCAGAGCTCGAAGATTGGTTGTGCTAAAGTTATATGTAAGGGTGGGGATACAATTTTTGCTTGTGTTTATGATCCTCCAGGTAATGTTATAGGCCAAAAGCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

195

Amino Acids

22.27

Weight (kDa)

9.11

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 68 - 183 1.4e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 283
AclWI GGATC 2 cut(s) 190, 545
AcoI YGGCCR 1 cut(s) 122
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 288, 346
AjnI CCWGG 2 cut(s) 272, 556
AluBI AGCT 4 cut(s) 141, 223, 264, 486
AluI AGCT 4 cut(s) 141, 223, 264, 486
Alw21I GWGCWC 1 cut(s) 488
AlwI GGATC 2 cut(s) 190, 545
AoxI GGCC 4 cut(s) 122, 226, 279, 571
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 341
AspS9I GGNCC 2 cut(s) 279, 280
AsuHPI GGTGA 1 cut(s) 135
AsuII TTCGAA 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 283
BalI TGGCCA 1 cut(s) 124
BanII GRGCYC 2 cut(s) 283, 488
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BciT130I CCWGG 2 cut(s) 274, 558
BciVI GTATCC 1 cut(s) 520
BfaI CTAG 1 cut(s) 257
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 2 cut(s) 274, 558
BmgT120I GGNCC 2 cut(s) 279, 280
BmiI GGNNCC 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 274, 558
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 36
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 346
Bse1I ACTGG 1 cut(s) 368
BseBI CCWGG 2 cut(s) 274, 558
BseCI ATCGAT 1 cut(s) 36
BseLI CCNNNNNNNGG 2 cut(s) 288, 346
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 2 cut(s) 92, 225
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 1 cut(s) 150
BshFI GGCC 4 cut(s) 124, 228, 281, 573
BshVI ATCGAT 1 cut(s) 36
BsiHKAI GWGCWC 1 cut(s) 488
BslI CCNNNNNNNGG 2 cut(s) 288, 346
BsnI GGCC 4 cut(s) 124, 228, 281, 573
Bsp119I TTCGAA 1 cut(s) 317
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 283, 488
Bsp143I GATC 5 cut(s) 33, 37, 195, 215, 550
BspACI CCGC 1 cut(s) 283
BspANI GGCC 4 cut(s) 124, 228, 281, 573
BspDI ATCGAT 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 281
BspPI GGATC 2 cut(s) 190, 545
BspT104I TTCGAA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 368
BssMI GATC 5 cut(s) 33, 37, 195, 215, 550
Bst2UI CCWGG 2 cut(s) 274, 558
Bst4CI ACNGT 1 cut(s) 117
Bst6I CTCTTC 2 cut(s) 175, 347
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 283, 455
BstKTI GATC 5 cut(s) 36, 40, 198, 218, 553
BstMBI GATC 5 cut(s) 33, 37, 195, 215, 550
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 2 cut(s) 274, 558
BstSCI CCNGG 2 cut(s) 272, 556
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 303
Bsu15I ATCGAT 1 cut(s) 36
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 4 cut(s) 124, 228, 281, 573
BsuTUI ATCGAT 1 cut(s) 36
BtsIMutI CAGTG 2 cut(s) 113, 207
Cac8I GCNNGC 2 cut(s) 283, 455
Cfr13I GGNCC 2 cut(s) 279, 280
ClaI ATCGAT 1 cut(s) 36
Csp6I GTAC 1 cut(s) 190
CviAII CATG 2 cut(s) 359, 390
CviQI GTAC 1 cut(s) 190
DpnI GATC 5 cut(s) 35, 39, 197, 217, 552
DpnII GATC 5 cut(s) 33, 37, 195, 215, 550
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 175, 347
EarI CTCTTC 2 cut(s) 175, 347
Ecl136II GAGCTC 1 cut(s) 486
Eco24I GRGCYC 2 cut(s) 283, 488
Eco53kI GAGCTC 1 cut(s) 486
EcoICRI GAGCTC 1 cut(s) 486
EcoRII CCWGG 2 cut(s) 272, 556
EcoT38I GRGCYC 2 cut(s) 283, 488
FaeI CATG 2 cut(s) 362, 393
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 2 cut(s) 358, 389
FauI CCCGC 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 139
FriOI GRGCYC 2 cut(s) 283, 488
Fsp4HI GCNGC 1 cut(s) 139
FspBI CTAG 1 cut(s) 257
GluI GCNGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 4 cut(s) 124, 228, 281, 573
Hin1II CATG 2 cut(s) 362, 393
HinfI GANTC 1 cut(s) 310
HphI GGTGA 1 cut(s) 135
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 1 cut(s) 441
Hpy8I GTNNAC 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 380, 457
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
Hsp92II CATG 2 cut(s) 362, 393
Kzo9I GATC 5 cut(s) 33, 37, 195, 215, 550
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 6 cut(s) 259, 286, 331, 349, 543, 570
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 367
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 81
MalI GATC 5 cut(s) 35, 39, 197, 217, 552
MboI GATC 5 cut(s) 33, 37, 195, 215, 550
MboII GAAGA 4 cut(s) 162, 308, 334, 502
MhlI GDGCHC 2 cut(s) 283, 488
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 2 cut(s) 87, 531
MluNI TGGCCA 1 cut(s) 124
Mox20I TGGCCA 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 341
MscI TGGCCA 1 cut(s) 124
MseI TTAA 2 cut(s) 5, 384
Msp20I TGGCCA 1 cut(s) 124
MspR9I CCNGG 2 cut(s) 274, 558
MvaI CCWGG 2 cut(s) 274, 558
MwoI GCNNNNNNNGC 1 cut(s) 386
NdeII GATC 5 cut(s) 33, 37, 195, 215, 550
NlaIII CATG 2 cut(s) 362, 393
NlaIV GGNNCC 1 cut(s) 281
NmeAIII GCCGAG 2 cut(s) 204, 396
NspV TTCGAA 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 310
PkrI GCNGC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 2 cut(s) 272, 556
PspGI CCWGG 2 cut(s) 272, 556
PspN4I GGNNCC 1 cut(s) 281
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 279, 280
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SacI GAGCTC 1 cut(s) 488
SaqAI TTAA 2 cut(s) 5, 384
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 5 cut(s) 33, 37, 195, 215, 550
Sau96I GGNCC 2 cut(s) 279, 280
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 274, 558
SduI GDGCHC 2 cut(s) 283, 488
SetI ASST 8 cut(s) 98, 143, 158, 225, 266, 342, 488, 562
SfaNI GCATC 1 cut(s) 367
SfuI TTCGAA 1 cut(s) 317
Sse9I AATT 2 cut(s) 87, 531
SsiI CCGC 1 cut(s) 283
SspMI CTAG 1 cut(s) 257
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 272, 556
TaaI ACNGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 36, 317, 488
TasI AATT 2 cut(s) 87, 531
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 5, 384
Tru9I TTAA 2 cut(s) 5, 384
TscAI CASTG 2 cut(s) 120, 214
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 2 cut(s) 120, 214
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.