Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011655

Physical Location & Seq

Genomic Coordinates Forward (+)

94756681 .. 94767682

Gene Structure 11002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00073900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGCGCGGACTTGGGTGTCTTTCGATCTGGATATGGTACGGTATCGTCGGCGGTGAACCACGGTGACGGCGGCTATGGGGATGGCGGTTTCCGGGTTTCGAGCTCCTACGGGGCTGCTATGGGGCTGGTGATGGATTGCAGGGATGGGGATGCTCAACGTGGTGGCTTTTTTGGCTATGTTGGTGATGGCACGAAGGTGGTCGATGGGGGAGGCGGCGTCTTTCTTGGCGACGGCGGCGGCAACATGCAACTTGGGAGCGGCCATGTTGTGGAGCAGGCAGTTGTTAGGGTTTCGAGAAAATTTGGGCTCGAGTTCGGGGAGAACCTCTTACGGGGGAGTGGACATGGGAAGGCGAGTGATGCGGTTAAAGCATGGGCGACGGAGAGTTGCTACTACGACCACAAGACCAACTCTTATGATCGAGAAAAAGGATTGCTTGCATTATACTCAAATGGTTTCGAAGCGAGCTCGAAGATTGGTTGTGCTAAAGTTATATGCAAGGGTGGGGATACAATTTTTGCTTGTGTTTATGATCCCCCGAGCACTGTCATGTCAAAGCCAAGTTATTTGACGGATTGGGACTATACAGATGTAACAAGTAGCTTTTTGATTGATCGCGATACACCATCAACTGATAGTAAGAGTAAGCTCAACCTTCATCCCGGCAGCACAACTGGTGCTAGCACCGATATTGATCTTGCGCCATCTCCTGTGGAGGTTAATCGATCAATGGTCACTGACATTATAAGAGAGAAGGAAGGGTCAGCTGGCCAAGGAGGAGGTGGCGGCCATAAACCAGGGTTGCCGCTGAGGGAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP

Protein Analysis

274

Amino Acids

28.43

Weight (kDa)

5.36

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25790 AT4G31470 AT5G57625
fragaria_vesca	FvH4_3g11680
malus_domestica	MD10G1239100.v1.1
prunus_persica	Prupe.4G105300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0018951
rosa_laevigata	RLG00000032410
rosa_multiflora	Rmu_sc0000563.1_g000021 Rmu_sc0000563.1_g000022 Rmu_sc0037607.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058920 Rroxscaffold_1G00073900 Rroxscaffold_1G00073940
rosa_rugosa	Rorug05G0046800
rosa_samantha	Rh5AG138600 Rh5BG137300 Rh5DG138100
rosa_wichuraiana	Rw5G012280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	749
AasI	GACNNNNNNGTC	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	2 cut(s)	8, 621
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	3 cut(s)	262, 772, 790
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	271, 334
AjnI	CCWGG	1 cut(s)	799
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	5 cut(s)	105, 471, 606, 652, 770
AluI	AGCT	5 cut(s)	105, 471, 606, 652, 770
Alw21I	GWGCWC	3 cut(s)	107, 473, 548
AlwI	GGATC	1 cut(s)	530
Ama87I	CYCGRG	2 cut(s)	311, 541
AoxI	GGCC	3 cut(s)	262, 772, 790
ApeKI	GCWGC	2 cut(s)	116, 669
ApoI	RAATTY	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	8, 706
AsuC2I	CCSGG	2 cut(s)	95, 666
AsuHPI	GGTGA	4 cut(s)	67, 77, 142, 197
AsuII	TTCGAA	1 cut(s)	462
AsuNHI	GCTAGC	1 cut(s)	683
AvaI	CYCGRG	2 cut(s)	311, 541
BalI	TGGCCA	1 cut(s)	774
BanII	GRGCYC	3 cut(s)	107, 312, 473
Bbv12I	GWGCWC	3 cut(s)	107, 473, 548
BbvCI	CCTCAGC	1 cut(s)	812
BbvI	GCAGC	2 cut(s)	103, 681
BccI	CCATC	7 cut(s)	77, 127, 140, 182, 200, 637, 715
BceAI	ACGGC	2 cut(s)	85, 250
BciT130I	CCWGG	1 cut(s)	801
BciVI	GTATCC	1 cut(s)	505
BcnI	CCSGG	2 cut(s)	95, 666
BfaI	CTAG	2 cut(s)	684, 823
BfuI	GTATCC	1 cut(s)	505
BisI	GCNGC	9 cut(s)	73, 117, 217, 238, 241, 262, 670, 790, 809
BlsI	GCNGC	9 cut(s)	74, 118, 218, 239, 242, 263, 671, 791, 810
Bme1390I	CCNGG	3 cut(s)	95, 666, 801
BmeT110I	CYCGRG	2 cut(s)	311, 541
BmrFI	CCNGG	3 cut(s)	95, 666, 801
BmsI	GCATC	2 cut(s)	142, 352
BmtI	GCTAGC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	812
Bpu14I	TTCGAA	1 cut(s)	462
BpuMI	CCSGG	2 cut(s)	95, 666
Bsa29I	ATCGAT	1 cut(s)	727
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	61, 775, 800
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 334
Bse1I	ACTGG	1 cut(s)	682
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	801
BseCI	ATCGAT	1 cut(s)	727
BseDI	CCNNGG	3 cut(s)	61, 775, 800
BseGI	GGATG	4 cut(s)	88, 151, 157, 661
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	2 cut(s)	271, 334
BseMII	CTCAG	1 cut(s)	803
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	1 cut(s)	795
BseXI	GCAGC	2 cut(s)	103, 681
Bsh1236I	CGCG	2 cut(s)	8, 621
BshFI	GGCC	3 cut(s)	264, 774, 792
BshVI	ATCGAT	1 cut(s)	727
BsiHKAI	GWGCWC	3 cut(s)	107, 473, 548
BsiHKCI	CYCGRG	2 cut(s)	311, 541
BsiSI	CCGG	2 cut(s)	94, 666
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	271, 334
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	3 cut(s)	264, 774, 792
BsoBI	CYCGRG	2 cut(s)	311, 541
Bsp119I	TTCGAA	1 cut(s)	462
Bsp1286I	GDGCHC	4 cut(s)	107, 312, 473, 548
Bsp143I	GATC	6 cut(s)	26, 421, 535, 616, 697, 728
Bsp68I	TCGCGA	1 cut(s)	621
BspANI	GGCC	3 cut(s)	264, 774, 792
BspCNI	CTCAG	1 cut(s)	804
BspDI	ATCGAT	1 cut(s)	727
BspFNI	CGCG	2 cut(s)	8, 621
BspOI	GCTAGC	1 cut(s)	687
BspPI	GGATC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	682
BssECI	CCNNGG	3 cut(s)	61, 775, 800
BssMI	GATC	6 cut(s)	26, 421, 535, 616, 697, 728
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	775
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	3 cut(s)	43, 65, 550
BstACI	GRCGYC	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	5 cut(s)	279, 441, 469, 685, 772
BstDEI	CTNAG	1 cut(s)	812
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	4 cut(s)	88, 151, 157, 661
BstFNI	CGCG	2 cut(s)	8, 621
BstHHI	GCGC	2 cut(s)	8, 706
BstKTI	GATC	6 cut(s)	29, 424, 538, 619, 700, 731
BstMBI	GATC	6 cut(s)	26, 421, 535, 616, 697, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 237, 362, 371
BstNI	CCWGG	1 cut(s)	801
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	3 cut(s)	93, 664, 799
BstUI	CGCG	2 cut(s)	8, 621
BstV1I	GCAGC	2 cut(s)	103, 681
Bsu15I	ATCGAT	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	505
BsuRI	GGCC	3 cut(s)	264, 774, 792
BsuTUI	ATCGAT	1 cut(s)	727
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	88, 151, 157, 661
BtsIMutI	CAGTG	2 cut(s)	546, 738
BtuMI	TCGCGA	1 cut(s)	621
Cac8I	GCNNGC	5 cut(s)	279, 441, 469, 685, 772
CfoI	GCGC	2 cut(s)	8, 706
ClaI	ATCGAT	1 cut(s)	727
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	5 cut(s)	247, 266, 347, 375, 553
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	812
DpnI	GATC	6 cut(s)	28, 423, 537, 618, 699, 730
DpnII	GATC	6 cut(s)	26, 421, 535, 616, 697, 728
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	3 cut(s)	262, 772, 790
Ecl136II	GAGCTC	2 cut(s)	105, 471
Eco130I	CCWWGG	1 cut(s)	775
Eco24I	GRGCYC	3 cut(s)	107, 312, 473
Eco53kI	GAGCTC	2 cut(s)	105, 471
Eco88I	CYCGRG	2 cut(s)	311, 541
EcoICRI	GAGCTC	2 cut(s)	105, 471
EcoRII	CCWGG	1 cut(s)	799
EcoT14I	CCWWGG	1 cut(s)	775
EcoT38I	GRGCYC	3 cut(s)	107, 312, 473
ErhI	CCWWGG	1 cut(s)	775
FaeI	CATG	5 cut(s)	250, 269, 350, 378, 556
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	5 cut(s)	246, 265, 346, 374, 552
Fnu4HI	GCNGC	9 cut(s)	73, 117, 217, 238, 241, 262, 670, 790, 809
FokI	GGATG	4 cut(s)	95, 158, 164, 648
FriOI	GRGCYC	3 cut(s)	107, 312, 473
Fsp4HI	GCNGC	9 cut(s)	73, 117, 217, 238, 241, 262, 670, 790, 809
FspBI	CTAG	2 cut(s)	684, 823
GlaI	GCGC	2 cut(s)	7, 705
GluI	GCNGC	9 cut(s)	73, 117, 217, 238, 241, 262, 670, 790, 809
HaeIII	GGCC	3 cut(s)	264, 774, 792
HapII	CCGG	2 cut(s)	94, 666
HgaI	GACGC	1 cut(s)	208
HhaI	GCGC	2 cut(s)	8, 706
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	5 cut(s)	250, 269, 350, 378, 556
Hin6I	GCGC	2 cut(s)	6, 704
HinP1I	GCGC	2 cut(s)	6, 704
HpaII	CCGG	2 cut(s)	94, 666
HphI	GGTGA	4 cut(s)	67, 77, 142, 197
Hpy166II	GTNNAC	2 cut(s)	58, 344
Hpy188III	TCNNGA	4 cut(s)	30, 297, 425, 620
Hpy8I	GTNNAC	2 cut(s)	58, 344
Hpy99I	CGWCG	3 cut(s)	52, 236, 385
HpyAV	CCTTC	6 cut(s)	190, 346, 668, 751, 755, 812
HpyCH4III	ACNGT	3 cut(s)	43, 65, 550
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	141, 250, 443, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 237, 362, 371
HpyF3I	CTNAG	1 cut(s)	812
HpySE526I	ACGT	1 cut(s)	160
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	250, 269, 350, 378, 556
HspAI	GCGC	2 cut(s)	6, 704
Kzo9I	GATC	6 cut(s)	26, 421, 535, 616, 697, 728
LmnI	GCTCC	3 cut(s)	110, 258, 274
Lsp1109I	GCAGC	2 cut(s)	103, 681
LweI	GCATC	2 cut(s)	142, 352
MaeI	CTAG	2 cut(s)	684, 823
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	3 cut(s)	65, 595, 736
MalI	GATC	6 cut(s)	28, 423, 537, 618, 699, 730
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	6 cut(s)	26, 421, 535, 616, 697, 728
MboII	GAAGA	1 cut(s)	487
MhlI	GDGCHC	4 cut(s)	107, 312, 473, 548
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	2 cut(s)	302, 516
MluNI	TGGCCA	1 cut(s)	774
MnlI	CCTC	6 cut(s)	206, 338, 712, 773, 776, 807
Mox20I	TGGCCA	1 cut(s)	774
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	2 cut(s)	369, 723
MslI	CAYNNNNRTG	2 cut(s)	197, 551
Msp20I	TGGCCA	1 cut(s)	774
MspA1I	CMGCKG	2 cut(s)	770, 811
MspI	CCGG	2 cut(s)	94, 666
MspR9I	CCNGG	3 cut(s)	95, 666, 801
MvaI	CCWGG	1 cut(s)	801
MvnI	CGCG	2 cut(s)	8, 621
MwoI	GCNNNNNNNGC	4 cut(s)	174, 237, 362, 371
NciI	CCSGG	2 cut(s)	95, 666
NdeII	GATC	6 cut(s)	26, 421, 535, 616, 697, 728
NheI	GCTAGC	1 cut(s)	683
NlaIII	CATG	5 cut(s)	250, 269, 350, 378, 556
NmuCI	GTSAC	2 cut(s)	65, 736
NruI	TCGCGA	1 cut(s)	621
NspI	RCATGY	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	462
OliI	CACNNNNGTG	1 cut(s)	197
PaeR7I	CTCGAG	1 cut(s)	311
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	9 cut(s)	74, 118, 218, 239, 242, 263, 671, 791, 810
PsiI	TTATAA	1 cut(s)	749
Psp124BI	GAGCTC	2 cut(s)	107, 473
Psp6I	CCWGG	1 cut(s)	799
PspGI	CCWGG	1 cut(s)	799
PspXI	VCTCGAGB	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	770
RruI	TCGCGA	1 cut(s)	621
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	2 cut(s)	197, 551
SacI	GAGCTC	2 cut(s)	107, 473
SaqAI	TTAA	2 cut(s)	369, 723
SatI	GCNGC	9 cut(s)	73, 117, 217, 238, 241, 262, 670, 790, 809
Sau3AI	GATC	6 cut(s)	26, 421, 535, 616, 697, 728
ScrFI	CCNGG	3 cut(s)	95, 666, 801
SduI	GDGCHC	4 cut(s)	107, 312, 473, 548
SfaNI	GCATC	2 cut(s)	142, 352
Sfr274I	CTCGAG	1 cut(s)	311
SfuI	TTCGAA	1 cut(s)	462
SlaI	CTCGAG	1 cut(s)	311
SmiMI	CAYNNNNRTG	2 cut(s)	197, 551
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	302, 516
SspMI	CTAG	2 cut(s)	684, 823
SstI	GAGCTC	2 cut(s)	107, 473
StyD4I	CCNGG	3 cut(s)	93, 664, 799
StyI	CCWWGG	1 cut(s)	775
TaaI	ACNGT	3 cut(s)	43, 65, 550
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	9 cut(s)	25, 101, 204, 296, 312, 424, 462, 473, 727
TasI	AATT	2 cut(s)	302, 516
TauI	GCSGC	7 cut(s)	75, 219, 240, 243, 264, 792, 811
Tru1I	TTAA	2 cut(s)	369, 723
Tru9I	TTAA	2 cut(s)	369, 723
TscAI	CASTG	2 cut(s)	553, 745
TseFI	GTSAC	2 cut(s)	65, 736
TseI	GCWGC	2 cut(s)	116, 669
Tsp45I	GTSAC	2 cut(s)	65, 736
TspDTI	ATGAA	1 cut(s)	650
TspGWI	ACGGA	2 cut(s)	398, 590
TspRI	CASTG	2 cut(s)	553, 745
Van91I	CCANNNNNTGG	1 cut(s)	271
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	782
XhoI	CTCGAG	1 cut(s)	311
XspI	CTAG	2 cut(s)	684, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.