FvH4_3g11680

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011655
Physical Location & Seq
Forward (+)
6892050 .. 6892718
669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11680.t1

Sequence Viewer

Length: 531 bp
ATGGAAAACAAATCATTTTCAATTTGCTTAGTGAGAACCTTCCTCCTCCTTTGTATACTGTTTTGGCCATCTTTCTCACGCAGCTCGCCCCATAAAACCTCCCCAACTCGCTCTTCTAACACCATGCACCAGTACTTGGTCCCTCACAACACTGAAAGATCAAAGCTCGGCCTCCCTCCTCTCAAATGGAGCAAGAAACTCGAGAGCTACGCTTCCTGGTGGGCACGACAACGGCGAGAAGACTGCTCATTGATTCATTCGAACAGCGAATATGGGGAGAACCTCTTCTGGGGGAGTGGACATGACTGGAAGCCAAGTGATGCAGTTAGAGCATGGGCAAGAGAGAGCCGCTACTACAACCACAAGACTAACTCTTGTGAGCAAAACAAGGATTGCTTGCATTATACTCAAATGGTTTGGAGGCAGAGCTCGAAGATTGGTTGTGCTAAGGTTGTATGTAAGAGTGGGGATACAATTCTTGCTTGTGTTTATGATCCTCCAGGTAATGTTATAGGCGAGAAGCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CAP

Protein Analysis

177

Amino Acids

20.41

Weight (kDa)

9.24

Isoelectric Point (pI)

63.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 49 - 164 2e-21 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AccI GTMKAC 1 cut(s) 55
AciI CCGC 1 cut(s) 349
AclWI GGATC 1 cut(s) 488
AcoI YGGCCR 1 cut(s) 65
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 136, 289
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 2 cut(s) 215, 499
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
AluBI AGCT 4 cut(s) 84, 166, 207, 429
AluI AGCT 4 cut(s) 84, 166, 207, 429
Alw21I GWGCWC 1 cut(s) 431
AlwI GGATC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 2 cut(s) 65, 169
ApeKI GCWGC 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 139
AsuII TTCGAA 1 cut(s) 260
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 226
BalI TGGCCA 1 cut(s) 67
BanII GRGCYC 1 cut(s) 431
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 248
BcgI CGANNNNNNTGC 4 cut(s) 181, 215, 225, 259
BciT130I CCWGG 2 cut(s) 217, 501
BciVI GTATCC 1 cut(s) 463
BfuI GTATCC 1 cut(s) 463
BisI GCNGC 2 cut(s) 82, 349
BlsI GCNGC 2 cut(s) 83, 350
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 217, 501
Bme18I GGWCC 1 cut(s) 139
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 217, 501
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 246
BpmI CTGGAG 1 cut(s) 483
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 260
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 289
Bse1I ACTGG 2 cut(s) 130, 311
BseBI CCWGG 2 cut(s) 217, 501
BseLI CCNNNNNNNGG 2 cut(s) 136, 289
BseNI ACTGG 2 cut(s) 130, 311
BseRI GAGGAG 2 cut(s) 35, 168
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 1 cut(s) 93
BshFI GGCC 2 cut(s) 67, 171
BsiHKAI GWGCWC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 136, 289
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 2 cut(s) 67, 171
BsoBI CYCGRG 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 226, 431
Bsp143I GATC 2 cut(s) 158, 493
BspACI CCGC 1 cut(s) 349
BspANI GGCC 2 cut(s) 67, 171
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 1 cut(s) 488
BspQI GCTCTTC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 260
BsrI ACTGG 2 cut(s) 130, 311
BssMI GATC 2 cut(s) 158, 493
BssNAI GTATAC 1 cut(s) 56
Bst1107I GTATAC 1 cut(s) 56
Bst2UI CCWGG 2 cut(s) 217, 501
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 2 cut(s) 118, 290
BstBI TTCGAA 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 86, 398
BstDEI CTNAG 2 cut(s) 28, 447
BstKTI GATC 2 cut(s) 161, 496
BstMBI GATC 2 cut(s) 158, 493
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 2 cut(s) 217, 501
BstSCI CCNGG 2 cut(s) 215, 499
BstSLI GKGCMC 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 246
BstZ17I GTATAC 1 cut(s) 56
BsuI GTATCC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 67, 171
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 86, 398
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 133
CviAII CATG 3 cut(s) 124, 302, 333
CviJI RGCY 9 cut(s) 67, 84, 166, 171, 207, 313, 348, 429, 523
CviKI_1 RGCY 9 cut(s) 67, 84, 166, 171, 207, 313, 348, 429, 523
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 28, 447
DpnI GATC 2 cut(s) 160, 495
DpnII GATC 2 cut(s) 158, 493
EaeI YGGCCR 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 118, 290
EarI CTCTTC 2 cut(s) 118, 290
Ecl136II GAGCTC 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 429
EcoRII CCWGG 2 cut(s) 215, 499
EcoT38I GRGCYC 1 cut(s) 431
FaeI CATG 3 cut(s) 127, 305, 336
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FaqI GGGAC 1 cut(s) 125
FatI CATG 3 cut(s) 123, 301, 332
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 82, 349
FriOI GRGCYC 1 cut(s) 431
Fsp4HI GCNGC 2 cut(s) 82, 349
GluI GCNGC 2 cut(s) 82, 349
GsuI CTGGAG 1 cut(s) 483
HaeIII GGCC 2 cut(s) 67, 171
Hin1II CATG 3 cut(s) 127, 305, 336
HinfI GANTC 1 cut(s) 253
Hpy166II GTNNAC 2 cut(s) 56, 299
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 56, 299
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 127, 323, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 2 cut(s) 28, 447
Hsp92II CATG 3 cut(s) 127, 305, 336
Kzo9I GATC 2 cut(s) 158, 493
LguI GCTCTTC 1 cut(s) 118
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 7 cut(s) 143, 202, 229, 274, 292, 486, 513
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 310
MalI GATC 2 cut(s) 160, 495
MboI GATC 2 cut(s) 158, 493
MboII GAAGA 4 cut(s) 105, 251, 277, 445
MhlI GDGCHC 2 cut(s) 226, 431
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 2 cut(s) 21, 474
MluNI TGGCCA 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 284
MscI TGGCCA 1 cut(s) 67
Msp20I TGGCCA 1 cut(s) 67
MspR9I CCNGG 2 cut(s) 217, 501
MvaI CCWGG 2 cut(s) 217, 501
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 2 cut(s) 158, 493
NlaIII CATG 3 cut(s) 127, 305, 336
NlaIV GGNNCC 1 cut(s) 141
NmeAIII GCCGAG 1 cut(s) 147
NspV TTCGAA 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 118
PcsI WCGNNNNNNNCGW 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 2 cut(s) 83, 350
Psp124BI GAGCTC 1 cut(s) 431
Psp6I CCWGG 2 cut(s) 215, 499
PspGI CCWGG 2 cut(s) 215, 499
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 139
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 118
SatI GCNGC 2 cut(s) 82, 349
Sau3AI GATC 2 cut(s) 158, 493
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 217, 501
SduI GDGCHC 2 cut(s) 226, 431
SetI ASST 9 cut(s) 41, 86, 101, 168, 209, 285, 431, 453, 505
SfaNI GCATC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 200
SfuI TTCGAA 1 cut(s) 260
SinI GGWCC 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 200
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 21, 474
SsiI CCGC 1 cut(s) 349
SstI GAGCTC 1 cut(s) 431
StyD4I CCNGG 2 cut(s) 215, 499
TaaI ACNGT 1 cut(s) 60
TaqI TCGA 3 cut(s) 201, 260, 431
TasI AATT 2 cut(s) 21, 474
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 1 cut(s) 253
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 139
XhoI CTCGAG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 284
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.