Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002421

Physical Location & Seq

Genomic Coordinates Forward (+)

13289641 .. 13291104

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTCAAATGTCGATGACCGTCGAGAAGAGTATCAAAGCTGACGTGACGGTGAGCCATGACCGTGTGAAAAGGGCTTACGTCACTTTCCTTGCTGGAAACAAAGACTACTGGATGGGTGTAGTTGGTCTAGCCAAGGGACTTCGTAAGGTGAAATCTGCTTATCCTCTTGTGGTTGCGATTCTCCCGGACGTGCCTGAGGAACACCGTCAAATCCTGTTGGCTCAGGGATGCATCATCCGTGAGATTGAACCGGTTTATCCACCGGAAAACAAAACCGGTTATTCAATGGCCTATTACGTTATCAACTACTCCAAGCTTCGTATTTGGGAGTTTGTGGAGTATGAAAAGATGATTTATCTAGATGGAGACATTCAAGTATTTAGTAACATCGATCATCTTTTCGATACTCCTCGTGGCTACTTGTACGCTGTCAAAGATTGCTTTTGCGAGATTTCTTGGTCCAAAACTCCTCAATTTAAGATAGGTTACTGCCAACAATGTCCTGAAAAGGTGACATGGCCTGTTGAAAGTCTTGGTTCTCCACCGCCGGTATATTTCAACGCCGGTATGTTGGTTTTTGAACCTAATCTCCTCACTTACGAGGATCTCCTTCGTGTTGTTCAAATCACCACTCCGACATATTTTGCCGAACAGGATTTTCTGAATGAATACTTTACAGACATTTACAAGCCCATCCCTTCGACCTACAACCTTGTAATGGCTATGCTTTGGCGTCATCCTGAACACATTGACCTTGACCAAATCAGTGTTATTCATTATTGTGCAAATGGTTCGAAGCCTTGGAGATTCGATGAAACTGAAGAGCATATGGATCGTGAGGACATAAAAATGTTGGTGAAGAAATGGTGGGATATTTATGAAGATTCGAGTTTAGATTACAAGAACTTTGTCGAGACTGAGTCCAAACTGAGTCCGATCAATGCAACCTTGGCTTCCAAGGAATCTGTTGGCGATGTCCTTATTAGTCTTGCCCCTTCCGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0012505 GO:0015980 GO:0016051 GO:0016192 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030141 GO:0030246 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0033692 GO:0034637 GO:0034645 GO:0034774 GO:0035250 GO:0035251 GO:0036094 GO:0036230 GO:0042119 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046527 GO:0046903 GO:0047216 GO:0048029 GO:0050896 GO:0051179 GO:0051234 GO:0055114 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:0101002 GO:1901576 GO:1904813

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

336

Amino Acids

38.85

Weight (kDa)

5.06

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	29 - 271	1.8e-52	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26250 AT5G30500 AT5G30500
fragaria_vesca	FvH4_6g07920 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930
malus_domestica	MD04G1190900.v1.1
prunus_persica	Prupe.6G309400_v2.0.a1 Prupe.6G309400_v2.0.a1
pyrus_communis	pycom04g16850
rosa_chinensis	RchiOBHm_Chr3g0457621 RchiOBHm_Chr3g0457631
rosa_laevigata	RLG00000025200 RLG00000025202 RLG00000025203
rosa_multiflora	Rmu_co8471647.1_g000001 Rmu_sc0005321.1_g000010 Rmu_sc0005321.1_g000011 Rmu_sc0007395.1_g000007 Rmu_sc0007395.1_g000008
rosa_roxburghii	Rroxscaffold_6G00421650 Rroxscaffold_6G00421660 Rroxscaffold_6G00421670
rosa_rugosa	Rorug03G0022200 Rorug03G0022300 Rorug03G0022400
rosa_samantha	Rh3AG082600 Rh3AG082700 Rh3AG083000 Rh3BG084900 Rh3BG085000 Rh3BG085500 Rh3CG085100 Rh3CG085200 Rh3CG085700 Rh3DG086400 Rh3DG086500
rosa_wichuraiana	Rw3G007100 Rw3G007110

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	548, 1002
AclWI	GGATC	2 cut(s)	615, 843
AcuI	CTGAAG	1 cut(s)	843
AcyI	GRCGYC	1 cut(s)	736
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgeI	ACCGGT	2 cut(s)	253, 278
AgsI	TTSAA	7 cut(s)	251, 288, 377, 530, 562, 584, 626
AjiI	CACGTC	2 cut(s)	46, 193
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	2 cut(s)	41, 319
AluI	AGCT	2 cut(s)	41, 319
Alw26I	GTCTC	2 cut(s)	363, 911
AlwI	GGATC	2 cut(s)	615, 843
AoxI	GGCC	2 cut(s)	291, 521
ApeKI	GCWGC	1 cut(s)	1004
AsiGI	ACCGGT	2 cut(s)	253, 278
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	5 cut(s)	64, 163, 526, 622, 871
AsuII	TTCGAA	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	462
AxyI	CCTNAGG	1 cut(s)	198
BauI	CACGAG	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	991
BccI	CCATC	3 cut(s)	109, 359, 704
BcgI	CGANNNNNNTGC	4 cut(s)	777, 811, 818, 852
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	363, 911
BfaI	CTAG	2 cut(s)	131, 362
BisI	GCNGC	1 cut(s)	1005
BlsI	GCNGC	1 cut(s)	1006
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	462
BmgBI	CACGTC	2 cut(s)	46, 193
BmgT120I	GGNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	221, 243
Bpu10I	CCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	797
BpuMI	CCSGG	1 cut(s)	188
Bsa29I	ATCGAT	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	736
BsaJI	CCNNGG	4 cut(s)	135, 803, 951, 960
BsaWI	WCCGGW	3 cut(s)	253, 265, 278
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse118I	RCCGGY	4 cut(s)	253, 278, 550, 566
Bse1I	ACTGG	1 cut(s)	116
Bse21I	CCTNAGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	4 cut(s)	135, 803, 951, 960
BseGI	GGATG	5 cut(s)	120, 236, 237, 696, 739
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMII	CTCAG	4 cut(s)	189, 239, 912, 923
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	3 cut(s)	402, 462, 584
BseXI	GCAGC	1 cut(s)	991
BshFI	GGCC	2 cut(s)	293, 523
BshTI	ACCGGT	2 cut(s)	253, 278
BshVI	ATCGAT	1 cut(s)	393
BsiSI	CCGG	6 cut(s)	188, 254, 266, 279, 551, 567
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	2 cut(s)	363, 911
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	293, 523
Bsp119I	TTCGAA	1 cut(s)	797
Bsp143I	GATC	4 cut(s)	394, 607, 835, 939
BspACI	CCGC	2 cut(s)	548, 1002
BspANI	GGCC	2 cut(s)	293, 523
BspCNI	CTCAG	4 cut(s)	190, 238, 913, 924
BspDI	ATCGAT	1 cut(s)	393
BspPI	GGATC	2 cut(s)	615, 843
BspQI	GCTCTTC	1 cut(s)	819
BspT104I	TTCGAA	1 cut(s)	797
BsrFI	RCCGGY	4 cut(s)	253, 278, 550, 566
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	4 cut(s)	253, 278, 550, 566
BssECI	CCNNGG	4 cut(s)	135, 803, 951, 960
BssMI	GATC	4 cut(s)	394, 607, 835, 939
BssNI	GRCGYC	1 cut(s)	736
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	4 cut(s)	135, 803, 951, 960
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	4 cut(s)	22, 52, 65, 209
Bst6I	CTCTTC	2 cut(s)	23, 819
BstACI	GRCGYC	1 cut(s)	736
BstBI	TTCGAA	1 cut(s)	797
BstDEI	CTNAG	4 cut(s)	198, 225, 921, 932
BstF5I	GGATG	5 cut(s)	120, 236, 237, 696, 739
BstKTI	GATC	4 cut(s)	397, 610, 838, 942
BstMAI	GTCTC	2 cut(s)	363, 911
BstMBI	GATC	4 cut(s)	394, 607, 835, 939
BstMWI	GCNNNNNNNGC	2 cut(s)	953, 1001
BstSCI	CCNGG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	991
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	393
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	293, 523
BsuTUI	ATCGAT	1 cut(s)	393
BtgZI	GCGATG	1 cut(s)	990
BtrI	CACGTC	2 cut(s)	46, 193
BtsCI	GGATG	5 cut(s)	120, 236, 237, 696, 739
BtsIMutI	CAGTG	1 cut(s)	775
Cfr10I	RCCGGY	4 cut(s)	253, 278, 550, 566
Cfr13I	GGNCC	1 cut(s)	462
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	1 cut(s)	427
CspAI	ACCGGT	2 cut(s)	253, 278
CviAII	CATG	2 cut(s)	59, 519
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	198, 225, 921, 932
DpnI	GATC	4 cut(s)	396, 609, 837, 941
DpnII	GATC	4 cut(s)	394, 607, 835, 939
Eam1104I	CTCTTC	2 cut(s)	23, 819
EarI	CTCTTC	2 cut(s)	23, 819
Eco130I	CCWWGG	4 cut(s)	135, 803, 951, 960
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	843
Eco81I	CCTNAGG	1 cut(s)	198
EcoT14I	CCWWGG	4 cut(s)	135, 803, 951, 960
EcoT22I	ATGCAT	1 cut(s)	236
ErhI	CCWWGG	4 cut(s)	135, 803, 951, 960
FaeI	CATG	2 cut(s)	62, 522
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	2 cut(s)	58, 518
FauNDI	CATATG	1 cut(s)	831
Fnu4HI	GCNGC	1 cut(s)	1005
FokI	GGATG	5 cut(s)	127, 224, 243, 683, 726
Fsp4HI	GCNGC	1 cut(s)	1005
FspBI	CTAG	2 cut(s)	131, 362
GluI	GCNGC	1 cut(s)	1005
HaeIII	GGCC	2 cut(s)	293, 523
HapII	CCGG	6 cut(s)	188, 254, 266, 279, 551, 567
HgaI	GACGC	1 cut(s)	725
Hin1I	GRCGYC	1 cut(s)	736
Hin1II	CATG	2 cut(s)	62, 522
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	6 cut(s)	181, 810, 887, 923, 934, 965
HpaII	CCGG	6 cut(s)	188, 254, 266, 279, 551, 567
HphI	GGTGA	5 cut(s)	64, 163, 526, 622, 871
Hpy188I	TCNGA	3 cut(s)	639, 666, 939
Hpy188III	TCNNGA	6 cut(s)	25, 362, 506, 743, 839, 916
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	623, 711, 1008
HpyCH4III	ACNGT	4 cut(s)	22, 52, 65, 209
HpyCH4IV	ACGT	4 cut(s)	45, 81, 192, 300
HpyCH4V	TGCA	4 cut(s)	234, 788, 947, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	953, 1001
HpyF3I	CTNAG	4 cut(s)	198, 225, 921, 932
HpySE526I	ACGT	4 cut(s)	45, 81, 192, 300
Hsp92I	GRCGYC	1 cut(s)	736
Hsp92II	CATG	2 cut(s)	62, 522
Kzo9I	GATC	4 cut(s)	394, 607, 835, 939
LguI	GCTCTTC	1 cut(s)	819
Lsp1109I	GCAGC	1 cut(s)	991
LweI	GCATC	2 cut(s)	221, 243
MaeI	CTAG	2 cut(s)	131, 362
MaeII	ACGT	4 cut(s)	45, 81, 192, 300
MaeIII	GTNAC	5 cut(s)	46, 82, 386, 488, 514
MalI	GATC	4 cut(s)	396, 609, 837, 941
MboI	GATC	4 cut(s)	394, 607, 835, 939
MboII	GAAGA	4 cut(s)	40, 836, 874, 896
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	1 cut(s)	476
MlyI	GAGTC	2 cut(s)	932, 943
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	7 cut(s)	177, 193, 423, 483, 598, 605, 835
Mph1103I	ATGCAT	1 cut(s)	236
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	3 cut(s)	63, 783, 851
MspA1I	CMGCKG	1 cut(s)	1004
MspI	CCGG	6 cut(s)	188, 254, 266, 279, 551, 567
MspR9I	CCNGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	2 cut(s)	953, 1001
NciI	CCSGG	1 cut(s)	188
NdeI	CATATG	1 cut(s)	831
NdeII	GATC	4 cut(s)	394, 607, 835, 939
NlaIII	CATG	2 cut(s)	62, 522
NmuCI	GTSAC	3 cut(s)	46, 82, 514
NsiI	ATGCAT	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	797
PciSI	GCTCTTC	1 cut(s)	819
PfeI	GAWTC	4 cut(s)	181, 810, 887, 965
PflFI	GACNNNGTC	1 cut(s)	922
PfoI	TCCNGGA	1 cut(s)	186
PinAI	ACCGGT	2 cut(s)	253, 278
PkrI	GCNGC	1 cut(s)	1006
PleI	GAGTC	2 cut(s)	931, 942
PpsI	GAGTC	2 cut(s)	931, 942
PspPI	GGNCC	1 cut(s)	462
PsuI	RGATCY	1 cut(s)	607
PsyI	GACNNNGTC	1 cut(s)	922
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	3 cut(s)	63, 783, 851
SapI	GCTCTTC	1 cut(s)	819
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	1 cut(s)	1005
Sau3AI	GATC	4 cut(s)	394, 607, 835, 939
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	2 cut(s)	932, 943
ScrFI	CCNGG	1 cut(s)	188
SfaNI	GCATC	2 cut(s)	221, 243
SfuI	TTCGAA	1 cut(s)	797
SinI	GGWCC	1 cut(s)	462
SmiMI	CAYNNNNRTG	3 cut(s)	63, 783, 851
Sse9I	AATT	1 cut(s)	476
SsiI	CCGC	2 cut(s)	548, 1002
SspMI	CTAG	2 cut(s)	131, 362
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	4 cut(s)	135, 803, 951, 960
TaaI	ACNGT	4 cut(s)	22, 52, 65, 209
TaiI	ACGT	4 cut(s)	48, 84, 195, 303
TaqI	TCGA	9 cut(s)	14, 24, 393, 405, 704, 797, 813, 890, 915
TasI	AATT	1 cut(s)	476
TfiI	GAWTC	4 cut(s)	181, 810, 887, 965
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	3 cut(s)	46, 82, 514
TseI	GCWGC	1 cut(s)	1004
Tsp45I	GTSAC	3 cut(s)	46, 82, 514
TspDTI	ATGAA	5 cut(s)	360, 684, 767, 831, 897
TspGWI	ACGGA	1 cut(s)	230
TspRI	CASTG	1 cut(s)	775
Tth111I	GACNNNGTC	1 cut(s)	922
VpaK11BI	GGWCC	1 cut(s)	462
XbaI	TCTAGA	1 cut(s)	361
XspI	CTAG	2 cut(s)	131, 362
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.