Rroxscaffold_6G00421650

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
42786276 .. 42787585
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421650.1

Sequence Viewer

Length: 1023 bp
ATGGCTCCTCATGATATCACCACCGCCGCTACCACCACCATCCTCTCCACCAAGGCCGCCACTGCCCCGAGCCGGGCCTATGTGACGTTCTTGGCCGGGAACGGCGACTACGTCAAAGGTGTGGTTGGTCTGGCCAAGGGTTTAAGGAAGGTGAAGAGTAAGTACCCACTAGTTGTGGCCATCTTACCCGATGTGCCTGAAGAGCATCGTCAGATCCTAGTCTCTCAGGGCTGCATAGTCCGAGAGATTGAGCCTGTTCACCCTCCTGAGAACCAGACCCAGTACGCCATGGCGTACTACGTCATCAACTACTCCAAGCTTCGAATTTGGGAGTTTGTGGAGTATAGCAAGATGATCTACTTGGATGGAGATATCCAAGTCTTTCAGAACATTGACCACCTGTTTGACTACCCTGACAACTACTTTTACGCTGTGATGGATTGCTTTTGTGAGTCGAATTGGAGGGACAGTCCCCAGTTCAAGATTGGGTACTGCCAGCAGTGCCCAGACAGGGTACAGTGGGACAACAGCTTGGGTCCCAAGCCTCCTCTATACTTCAATGCTGGCATGTTTGTCTATGAGCCAAACTTGTCTACTTACCATGATCTCATGAGCACCCTCAAGACTTCTACTCCGACTTTGTTTGCTGAGCAGGATTTCTTGAATGTGTTCTTTAGGGACAAGTACGTGCCTATCCCTTCAGACTACAACCTTGTGTTGGCTATGCTCTGGCGCCACCCTGAAAACATCAAGCTAGAGGAGGTCAAAGTTGTCCACTATTGTGCTAATGGTTCTAAGCCATGGAGGTACAATGGAGAAGGGGAGAACATGGAGCGAGAAGACATCAAGATGTTGGTGAAGAAATGGTGGGACATTTATGATGACGAGTCTTTGGACTACAAGAATTGCATTGGTGCTGCAGAGTCTGGAAATGGCACCGGACAAGTGAACCTGCAGCCATTTGTGGCAGCCCTGTCGGAGGCTGGCGATGTTCGTTTTGTTACCGCTCCAAGAGCTGCCTAG

Protein Analysis

340

Amino Acids

38.85

Weight (kDa)

5.24

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 29 - 271 2.2e-44 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 960
AccB1I GGYRCC 2 cut(s) 732, 935
AccBSI CCGCTC 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 593
AciI CCGC 4 cut(s) 24, 27, 57, 1005
AclWI GGATC 1 cut(s) 208
AcoI YGGCCR 3 cut(s) 93, 132, 177
AcsI RAATTY 1 cut(s) 324
AcuI CTGAAG 2 cut(s) 219, 684
AcyI GRCGYC 1 cut(s) 733
AfaI GTAC 7 cut(s) 164, 284, 296, 491, 516, 686, 809
AfiI CCNNNNNNNGG 5 cut(s) 72, 73, 511, 718, 979
AgsI TTSAA 3 cut(s) 481, 559, 664
AhlI ACTAGT 1 cut(s) 169
AleI CACNNNNGTG 1 cut(s) 780
AluBI AGCT 4 cut(s) 319, 531, 754, 1016
AluI AGCT 4 cut(s) 319, 531, 754, 1016
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 1 cut(s) 208
AlwNI CAGNNNCTG 1 cut(s) 926
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 5 cut(s) 54, 75, 93, 132, 177
ApeKI GCWGC 5 cut(s) 231, 917, 955, 968, 1016
ApoI RAATTY 1 cut(s) 324
ArsI GACNNNNNNTTYG 2 cut(s) 386, 418
Asp700I GAANNNNTTC 1 cut(s) 668
AspLEI GCGC 1 cut(s) 735
AspS9I GGNCC 2 cut(s) 75, 536
AsuC2I CCSGG 2 cut(s) 74, 97
AsuHPI GGTGA 4 cut(s) 10, 163, 251, 868
AsuII TTCGAA 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 1 cut(s) 536
BaeGI GKGCMC 1 cut(s) 506
BalI TGGCCA 2 cut(s) 134, 179
BanI GGYRCC 2 cut(s) 732, 935
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 617
BbvI GCAGC 5 cut(s) 218, 904, 967, 980, 1003
BccI CCATC 4 cut(s) 47, 188, 359, 430
BceAI ACGGC 1 cut(s) 118
BcgI CGANNNNNNTGC 2 cut(s) 957, 991
BcnI CCSGG 2 cut(s) 74, 97
BcoDI GTCTC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 4 cut(s) 170, 218, 755, 1021
BfmI CTRYAG 2 cut(s) 918, 953
BfoI RGCGCY 1 cut(s) 736
BfuAI ACCTGC 1 cut(s) 960
BisI GCNGC 7 cut(s) 27, 57, 232, 918, 956, 969, 1017
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 7 cut(s) 28, 58, 233, 919, 957, 970, 1018
Bme1390I CCNGG 2 cut(s) 74, 97
Bme18I GGWCC 1 cut(s) 536
BmeT110I CYCGRG 1 cut(s) 67
BmgT120I GGNCC 2 cut(s) 75, 536
BmiI GGNNCC 5 cut(s) 6, 537, 538, 734, 937
BmrFI CCNGG 2 cut(s) 74, 97
BmrI ACTGGG 2 cut(s) 274, 469
BmsI GCATC 1 cut(s) 214
BmuI ACTGGG 2 cut(s) 274, 469
BpiI GAAGAC 1 cut(s) 846
Bpu1102I GCTNAGC 1 cut(s) 648
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 2 cut(s) 74, 97
BsaAI YACGTR 1 cut(s) 688
BsaHI GRCGYC 1 cut(s) 733
BsaJI CCNNGG 4 cut(s) 51, 135, 288, 800
BsaWI WCCGGW 1 cut(s) 938
BsaXI ACNNNNNCTCC 4 cut(s) 454, 484, 616, 646
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 73, 511, 718, 979
Bse1I ACTGG 2 cut(s) 280, 475
BseDI CCNNGG 4 cut(s) 51, 135, 288, 800
BseGI GGATG 2 cut(s) 39, 370
BseLI CCNNNNNNNGG 5 cut(s) 72, 73, 511, 718, 979
BseMII CTCAG 3 cut(s) 239, 258, 639
BseNI ACTGG 2 cut(s) 280, 475
BseRI GAGGAG 2 cut(s) 537, 773
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 5 cut(s) 218, 904, 967, 980, 1003
BshFI GGCC 5 cut(s) 56, 77, 95, 134, 179
BshNI GGYRCC 2 cut(s) 732, 935
BsiHKAI GWGCWC 1 cut(s) 617
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 3 cut(s) 73, 96, 939
BslFI GGGAC 6 cut(s) 456, 479, 522, 536, 692, 884
BslI CCNNNNNNNGG 5 cut(s) 72, 73, 511, 718, 979
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 6 cut(s) 456, 479, 522, 536, 692, 884
BsnI GGCC 5 cut(s) 56, 77, 95, 134, 179
BsoBI CYCGRG 1 cut(s) 67
Bsp119I TTCGAA 1 cut(s) 322
Bsp1286I GDGCHC 2 cut(s) 506, 617
Bsp143I GATC 3 cut(s) 213, 354, 604
Bsp1720I GCTNAGC 1 cut(s) 648
Bsp19I CCATGG 2 cut(s) 288, 800
BspACI CCGC 4 cut(s) 24, 27, 57, 1005
BspANI GGCC 5 cut(s) 56, 77, 95, 134, 179
BspCNI CTCAG 3 cut(s) 238, 259, 640
BspHI TCATGA 2 cut(s) 10, 609
BspLI GGNNCC 5 cut(s) 6, 537, 538, 734, 937
BspMAI CTGCAG 2 cut(s) 922, 957
BspMI ACCTGC 1 cut(s) 960
BspPI GGATC 1 cut(s) 208
BspQI GCTCTTC 1 cut(s) 195
BspT104I TTCGAA 1 cut(s) 322
BspT107I GGYRCC 2 cut(s) 732, 935
BsrBI CCGCTC 1 cut(s) 1007
BsrI ACTGG 2 cut(s) 280, 475
BssECI CCNNGG 4 cut(s) 51, 135, 288, 800
BssMI GATC 3 cut(s) 213, 354, 604
BssNI GRCGYC 1 cut(s) 733
BssT1I CCWWGG 4 cut(s) 51, 135, 288, 800
Bst4CI ACNGT 2 cut(s) 470, 519
Bst6I CTCTTC 2 cut(s) 149, 195
BstACI GRCGYC 1 cut(s) 733
BstBAI YACGTR 1 cut(s) 688
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 3 cut(s) 497, 565, 985
BstDEI CTNAG 4 cut(s) 225, 267, 648, 795
BstDSI CCRYGG 2 cut(s) 288, 800
BstENI CCTNNNNNAGG 1 cut(s) 977
BstF5I GGATG 2 cut(s) 39, 370
BstH2I RGCGCY 1 cut(s) 736
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 3 cut(s) 216, 357, 607
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 3 cut(s) 213, 354, 604
BstMWI GCNNNNNNNGC 4 cut(s) 62, 202, 501, 1013
BstNSI RCATGY 1 cut(s) 571
BstSCI CCNGG 2 cut(s) 72, 95
BstSFI CTRYAG 2 cut(s) 918, 953
BstSLI GKGCMC 1 cut(s) 506
BstV1I GCAGC 5 cut(s) 218, 904, 967, 980, 1003
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 5 cut(s) 56, 77, 95, 134, 179
BtgI CCRYGG 2 cut(s) 288, 800
BtgZI GCGATG 1 cut(s) 1002
BtsCI GGATG 2 cut(s) 39, 370
BtsI GCAGTG 2 cut(s) 60, 506
BtsIMutI CAGTG 3 cut(s) 60, 506, 524
BveI ACCTGC 1 cut(s) 960
Cac8I GCNNGC 3 cut(s) 497, 565, 985
CaiI CAGNNNCTG 1 cut(s) 926
CciI TCATGA 2 cut(s) 10, 609
CfoI GCGC 1 cut(s) 735
Cfr13I GGNCC 2 cut(s) 75, 536
Csp6I GTAC 7 cut(s) 163, 283, 295, 490, 515, 685, 808
CviAII CATG 7 cut(s) 11, 289, 568, 602, 610, 801, 829
CviQI GTAC 7 cut(s) 163, 283, 295, 490, 515, 685, 808
DdeI CTNAG 4 cut(s) 225, 267, 648, 795
DinI GGCGCC 1 cut(s) 734
DpnI GATC 3 cut(s) 215, 356, 606
DpnII GATC 3 cut(s) 213, 354, 604
EaeI YGGCCR 3 cut(s) 93, 132, 177
Eam1104I CTCTTC 2 cut(s) 149, 195
EarI CTCTTC 2 cut(s) 149, 195
Eco130I CCWWGG 4 cut(s) 51, 135, 288, 800
Eco32I GATATC 2 cut(s) 16, 373
Eco47I GGWCC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 219, 684
Eco88I CYCGRG 1 cut(s) 67
EcoNI CCTNNNNNAGG 1 cut(s) 977
EcoO109I RGGNCCY 1 cut(s) 536
EcoRV GATATC 2 cut(s) 16, 373
EcoT14I CCWWGG 4 cut(s) 51, 135, 288, 800
EgeI GGCGCC 1 cut(s) 734
EheI GGCGCC 1 cut(s) 734
ErhI CCWWGG 4 cut(s) 51, 135, 288, 800
FaeI CATG 7 cut(s) 14, 292, 571, 605, 613, 804, 832
FaqI GGGAC 6 cut(s) 456, 479, 522, 536, 692, 884
FatI CATG 7 cut(s) 10, 288, 567, 601, 609, 800, 828
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 7 cut(s) 27, 57, 232, 918, 956, 969, 1017
FokI GGATG 2 cut(s) 26, 377
Fsp4HI GCNGC 7 cut(s) 27, 57, 232, 918, 956, 969, 1017
FspBI CTAG 4 cut(s) 170, 218, 755, 1021
GlaI GCGC 1 cut(s) 734
GluI GCNGC 7 cut(s) 27, 57, 232, 918, 956, 969, 1017
HaeII RGCGCY 1 cut(s) 736
HaeIII GGCC 5 cut(s) 56, 77, 95, 134, 179
HapII CCGG 3 cut(s) 73, 96, 939
HhaI GCGC 1 cut(s) 735
Hin1I GRCGYC 1 cut(s) 733
Hin1II CATG 7 cut(s) 14, 292, 571, 605, 613, 804, 832
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 3 cut(s) 452, 887, 923
HpaII CCGG 3 cut(s) 73, 96, 939
HphI GGTGA 4 cut(s) 10, 163, 251, 868
Hpy166II GTNNAC 4 cut(s) 259, 594, 775, 949
Hpy188I TCNGA 6 cut(s) 213, 242, 387, 636, 703, 979
Hpy188III TCNNGA 8 cut(s) 11, 266, 481, 610, 622, 661, 847, 927
Hpy8I GTNNAC 4 cut(s) 259, 594, 775, 949
HpyAV CCTTC 3 cut(s) 142, 708, 812
HpyCH4III ACNGT 2 cut(s) 470, 519
HpyCH4IV ACGT 4 cut(s) 86, 111, 300, 687
HpyCH4V TGCA 4 cut(s) 234, 909, 920, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 202, 501, 1013
HpyF3I CTNAG 4 cut(s) 225, 267, 648, 795
HpySE526I ACGT 4 cut(s) 86, 111, 300, 687
Hsp92I GRCGYC 1 cut(s) 733
Hsp92II CATG 7 cut(s) 14, 292, 571, 605, 613, 804, 832
HspAI GCGC 1 cut(s) 733
KasI GGCGCC 1 cut(s) 732
KflI GGGWCCC 1 cut(s) 536
Kzo9I GATC 3 cut(s) 213, 354, 604
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 10, 832, 1012
Lsp1109I GCAGC 5 cut(s) 218, 904, 967, 980, 1003
LweI GCATC 1 cut(s) 214
MaeI CTAG 4 cut(s) 170, 218, 755, 1021
MaeII ACGT 4 cut(s) 86, 111, 300, 687
MaeIII GTNAC 2 cut(s) 82, 1000
MalI GATC 3 cut(s) 215, 356, 606
MbiI CCGCTC 1 cut(s) 1007
MboI GATC 3 cut(s) 213, 354, 604
MboII GAAGA 4 cut(s) 166, 212, 851, 871
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 506, 617
MlsI TGGCCA 2 cut(s) 134, 179
MluCI AATT 3 cut(s) 324, 457, 904
MluNI TGGCCA 2 cut(s) 134, 179
Mly113I GGCGCC 1 cut(s) 733
MlyI GAGTC 3 cut(s) 461, 896, 932
MmeI TCCRAC 2 cut(s) 659, 957
Mox20I TGGCCA 2 cut(s) 134, 179
MroXI GAANNNNTTC 1 cut(s) 668
MscI TGGCCA 2 cut(s) 134, 179
MseI TTAA 1 cut(s) 143
MslI CAYNNNNRTG 2 cut(s) 780, 848
Msp20I TGGCCA 2 cut(s) 134, 179
MspI CCGG 3 cut(s) 73, 96, 939
MspR9I CCNGG 2 cut(s) 74, 97
MwoI GCNNNNNNNGC 4 cut(s) 62, 202, 501, 1013
NarI GGCGCC 1 cut(s) 733
NciI CCSGG 2 cut(s) 74, 97
NcoI CCATGG 2 cut(s) 288, 800
NdeII GATC 3 cut(s) 213, 354, 604
NlaIII CATG 7 cut(s) 14, 292, 571, 605, 613, 804, 832
NlaIV GGNNCC 5 cut(s) 6, 537, 538, 734, 937
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 571
NspV TTCGAA 1 cut(s) 322
OliI CACNNNNGTG 1 cut(s) 780
PagI TCATGA 2 cut(s) 10, 609
PciSI GCTCTTC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 668
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 7 cut(s) 28, 58, 233, 919, 957, 970, 1018
PleI GAGTC 3 cut(s) 460, 895, 931
PluTI GGCGCC 1 cut(s) 736
PpsI GAGTC 3 cut(s) 460, 895, 931
Ppu21I YACGTR 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 536
PspN4I GGNNCC 5 cut(s) 6, 537, 538, 734, 937
PspPI GGNCC 2 cut(s) 75, 536
PspPPI RGGWCCY 1 cut(s) 536
PsrI GAACNNNNNNTAC 2 cut(s) 92, 124
PstI CTGCAG 2 cut(s) 922, 957
PstNI CAGNNNCTG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 213
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 7 cut(s) 164, 284, 296, 491, 516, 686, 809
RsaNI GTAC 7 cut(s) 163, 283, 295, 490, 515, 685, 808
RseI CAYNNNNRTG 2 cut(s) 780, 848
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 7 cut(s) 27, 57, 232, 918, 956, 969, 1017
Sau3AI GATC 3 cut(s) 213, 354, 604
Sau96I GGNCC 2 cut(s) 75, 536
SchI GAGTC 3 cut(s) 461, 896, 932
ScrFI CCNGG 2 cut(s) 74, 97
SduI GDGCHC 2 cut(s) 506, 617
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 2 cut(s) 918, 953
SfoI GGCGCC 1 cut(s) 734
SfuI TTCGAA 1 cut(s) 322
SinI GGWCC 1 cut(s) 536
SmiMI CAYNNNNRTG 2 cut(s) 780, 848
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
SpeI ACTAGT 1 cut(s) 169
Sse9I AATT 3 cut(s) 324, 457, 904
SsiI CCGC 4 cut(s) 24, 27, 57, 1005
SspDI GGCGCC 1 cut(s) 732
SspMI CTAG 4 cut(s) 170, 218, 755, 1021
StyD4I CCNGG 2 cut(s) 72, 95
StyI CCWWGG 4 cut(s) 51, 135, 288, 800
TaaI ACNGT 2 cut(s) 470, 519
TaiI ACGT 4 cut(s) 89, 114, 303, 690
TaqI TCGA 2 cut(s) 322, 455
TasI AATT 3 cut(s) 324, 457, 904
TauI GCSGC 2 cut(s) 29, 59
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 3 cut(s) 67, 506, 524
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 5 cut(s) 231, 917, 955, 968, 1016
Tsp45I GTSAC 1 cut(s) 82
TspRI CASTG 3 cut(s) 67, 506, 524
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 536
XagI CCTNNNNNAGG 1 cut(s) 977
XapI RAATTY 1 cut(s) 324
XceI RCATGY 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 4 cut(s) 170, 218, 755, 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.