Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002421

Physical Location & Seq

Genomic Coordinates Reverse (-)

1774650 .. 1775631

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGACTCTTCGGAGTTCTCTTTTGAGTCTTGTTCTTCCTTCAGCTCTCTGGGTTCTGATCTTTCCTGGGACATGTTCAATTTTGATCACAGTTACAATCAAGTACAAGTACCCGCTCAGCTACCATTCAACGAAAACGACTCTGAAGAAATGGTTCTTTACGGAGTTCTTGCTCAGGCTGGTGCCGGAGACTCCTCCGACGCAACCAGTACTGCTCATCATTCTAAAGATCATGAAGAGGTGAACTCCAACGCCGCCTTGGAATACGAGGAGCCTATGAAGGACGAGATAGCATATAGAGGAGTCCGCCGGCGGCCATGGGGGAAGTACGCGGCGGAGATAAGGGATTCAACCCGAAATGGGGTGCGGGTTTGGTTGGGAACTTTTGACACGGCGGAGGATGCAGCTCTAGCTTACGACCAAGCAGCATTTGCAATGCGGGGGACTCTGGCGGTACTTAATTTTCCGGCTGACGTTGTTTACCAGTCGCTCGTCGACATGAATTACGGGTTTGAAGAGGGCTCATCTCCGGTTTTGGCCTTGAAGAAAAGGCACTCCATGAAGAGGAAGTCATCGATGAACAAAAAGAAGAAGGACGTTCAGAAGTGTGATGATGATGATGTTGAGGAGTTGAGGTTGGAAAATGTGGTGGTTTTTGAGGATCTTGGTGCTGACTATTTGGAAGAGCTTCTCAGTATATCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0031668 GO:0033554 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0042221 GO:0042631 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0051716 GO:0055114 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071465 GO:0071496 GO:0071704 GO:0097305 GO:0104004 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

235

Amino Acids

26.32

Weight (kDa)

4.53

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	99 - 148	2.7e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26250 AT5G30500 AT5G30500
fragaria_vesca	FvH4_6g07920 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930
malus_domestica	MD04G1190900.v1.1
prunus_persica	Prupe.6G309400_v2.0.a1 Prupe.6G309400_v2.0.a1
pyrus_communis	pycom04g16850
rosa_chinensis	RchiOBHm_Chr3g0457621 RchiOBHm_Chr3g0457631
rosa_laevigata	RLG00000025200 RLG00000025202 RLG00000025203
rosa_multiflora	Rmu_co8471647.1_g000001 Rmu_sc0005321.1_g000010 Rmu_sc0005321.1_g000011 Rmu_sc0007395.1_g000007 Rmu_sc0007395.1_g000008
rosa_roxburghii	Rroxscaffold_6G00421650 Rroxscaffold_6G00421660 Rroxscaffold_6G00421670
rosa_rugosa	Rorug03G0022200 Rorug03G0022300 Rorug03G0022400
rosa_samantha	Rh3AG082600 Rh3AG082700 Rh3AG083000 Rh3BG084900 Rh3BG085000 Rh3BG085500 Rh3CG085100 Rh3CG085200 Rh3CG085700 Rh3DG086400 Rh3DG086500
rosa_wichuraiana	Rw3G007100 Rw3G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	1 cut(s)	332
AclWI	GGATC	1 cut(s)	669
AcoI	YGGCCR	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	25, 165
AfaI	GTAC	5 cut(s)	105, 111, 211, 329, 456
AfiI	CCNNNNNNNGG	3 cut(s)	360, 361, 564
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	5 cut(s)	79, 130, 351, 515, 544
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	5 cut(s)	45, 121, 407, 413, 688
AluI	AGCT	5 cut(s)	45, 121, 407, 413, 688
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	669
AoxI	GGCC	2 cut(s)	314, 537
ApeKI	GCWGC	2 cut(s)	404, 425
Asp700I	GAANNNNTTC	2 cut(s)	153, 687
AsuHPI	GGTGA	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	524
BbvI	GCAGC	2 cut(s)	416, 437
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	67
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	410
BisI	GCNGC	5 cut(s)	255, 314, 333, 405, 426
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	5 cut(s)	256, 315, 334, 406, 427
BmcAI	AGTACT	1 cut(s)	211
Bme1390I	CCNGG	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	184, 273
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	391
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu1102I	GCTNAGC	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	575
BsaJI	CCNNGG	3 cut(s)	66, 258, 317
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bsc4I	CCNNNNNNNGG	3 cut(s)	360, 361, 564
Bse118I	RCCGGY	1 cut(s)	309
Bse1I	ACTGG	2 cut(s)	207, 484
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	67
BseCI	ATCGAT	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	66, 258, 317
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	360, 361, 564
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	131, 188, 706
BseNI	ACTGG	2 cut(s)	207, 484
BseRI	GAGGAG	4 cut(s)	184, 284, 315, 641
BseXI	GCAGC	2 cut(s)	416, 437
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	316, 539
BshNI	GGYRCC	1 cut(s)	182
BshVI	ATCGAT	1 cut(s)	575
BsiSI	CCGG	4 cut(s)	186, 310, 467, 530
BslFI	GGGAC	2 cut(s)	83, 457
BslI	CCNNNNNNNGG	3 cut(s)	360, 361, 564
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	2 cut(s)	83, 457
BsnI	GGCC	2 cut(s)	316, 539
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp143I	GATC	4 cut(s)	58, 85, 229, 661
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	317
BspANI	GGCC	2 cut(s)	316, 539
BspCNI	CTCAG	3 cut(s)	130, 187, 705
BspDI	ATCGAT	1 cut(s)	575
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	184, 273
BspPI	GGATC	1 cut(s)	669
BspQI	GCTCTTC	1 cut(s)	678
BspT107I	GGYRCC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	309
BsrI	ACTGG	2 cut(s)	207, 484
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	3 cut(s)	66, 258, 317
BssMI	GATC	4 cut(s)	58, 85, 229, 661
BssT1I	CCWWGG	2 cut(s)	258, 317
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	5 cut(s)	13, 231, 510, 557, 678
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	3 cut(s)	117, 174, 692
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	4 cut(s)	61, 88, 232, 664
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	4 cut(s)	58, 85, 229, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 410, 431
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	65
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	416, 437
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
Bsu15I	ATCGAT	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	316, 539
BsuTUI	ATCGAT	1 cut(s)	575
BtgI	CCRYGG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	311
CciI	TCATGA	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	309
ClaI	ATCGAT	1 cut(s)	575
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	5 cut(s)	104, 110, 210, 328, 455
CviAII	CATG	5 cut(s)	73, 233, 318, 499, 559
CviQI	GTAC	5 cut(s)	104, 110, 210, 328, 455
DdeI	CTNAG	3 cut(s)	117, 174, 692
DpnI	GATC	4 cut(s)	60, 87, 231, 663
DpnII	GATC	4 cut(s)	58, 85, 229, 661
EaeI	YGGCCR	1 cut(s)	314
Eam1104I	CTCTTC	5 cut(s)	13, 231, 510, 557, 678
EarI	CTCTTC	5 cut(s)	13, 231, 510, 557, 678
EciI	GGCGGA	3 cut(s)	296, 350, 410
Eco130I	CCWWGG	2 cut(s)	258, 317
Eco24I	GRGCYC	1 cut(s)	524
Eco57I	CTGAAG	2 cut(s)	25, 165
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	2 cut(s)	258, 317
EcoT38I	GRGCYC	1 cut(s)	524
ErhI	CCWWGG	2 cut(s)	258, 317
FaeI	CATG	5 cut(s)	76, 236, 321, 502, 562
FaiI	YATR	9 cut(s)	74, 234, 278, 295, 297, 319, 500, 560, 698
FaqI	GGGAC	2 cut(s)	83, 457
FatI	CATG	5 cut(s)	72, 232, 317, 498, 558
FauI	CCCGC	3 cut(s)	121, 360, 432
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	5 cut(s)	255, 314, 333, 405, 426
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	5 cut(s)	255, 314, 333, 405, 426
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	5 cut(s)	255, 314, 333, 405, 426
HaeIII	GGCC	2 cut(s)	316, 539
HapII	CCGG	4 cut(s)	186, 310, 467, 530
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	5 cut(s)	76, 236, 321, 502, 562
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HinfI	GANTC	7 cut(s)	5, 26, 140, 191, 303, 347, 445
HpaII	CCGG	4 cut(s)	186, 310, 467, 530
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	3 cut(s)	244, 481, 496
Hpy188I	TCNGA	5 cut(s)	13, 58, 145, 199, 603
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	3 cut(s)	244, 481, 496
Hpy99I	CGWCG	2 cut(s)	203, 497
HpyAV	CCTTC	3 cut(s)	49, 274, 586
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	2 cut(s)	474, 597
HpyCH4V	TGCA	2 cut(s)	404, 434
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 410, 431
HpyF3I	CTNAG	3 cut(s)	117, 174, 692
HpySE526I	ACGT	2 cut(s)	474, 597
Hsp92II	CATG	5 cut(s)	76, 236, 321, 502, 562
KroI	GCCGGC	1 cut(s)	309
KroNI	GCCGGC	1 cut(s)	311
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	58, 85, 229, 661
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	2 cut(s)	416, 437
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	2 cut(s)	474, 597
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	4 cut(s)	60, 87, 231, 663
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	4 cut(s)	58, 85, 229, 661
MboII	GAAGA	9 cut(s)	27, 158, 248, 527, 556, 574, 601, 693, 695
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	1 cut(s)	524
MluCI	AATT	3 cut(s)	79, 460, 502
MlyI	GAGTC	5 cut(s)	35, 134, 185, 312, 439
MmeI	TCCRAC	3 cut(s)	222, 273, 618
MreI	CGCCGGCG	1 cut(s)	309
MroNI	GCCGGC	1 cut(s)	309
MroXI	GAANNNNTTC	2 cut(s)	153, 687
MseI	TTAA	2 cut(s)	459, 706
MspI	CCGG	4 cut(s)	186, 310, 467, 530
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	3 cut(s)	401, 410, 431
NaeI	GCCGGC	1 cut(s)	311
NcoI	CCATGG	1 cut(s)	317
NdeII	GATC	4 cut(s)	58, 85, 229, 661
NgoMIV	GCCGGC	1 cut(s)	309
NlaIII	CATG	5 cut(s)	76, 236, 321, 502, 562
NlaIV	GGNNCC	2 cut(s)	184, 273
NspI	RCATGY	1 cut(s)	76
PagI	TCATGA	1 cut(s)	232
PciI	ACATGT	1 cut(s)	72
PciSI	GCTCTTC	1 cut(s)	678
PdiI	GCCGGC	1 cut(s)	311
PdmI	GAANNNNTTC	2 cut(s)	153, 687
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	256, 315, 334, 406, 427
PleI	GAGTC	5 cut(s)	34, 134, 185, 311, 439
PpsI	GAGTC	5 cut(s)	34, 134, 185, 311, 439
PscI	ACATGT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	184, 273
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	5 cut(s)	105, 111, 211, 329, 456
RsaNI	GTAC	5 cut(s)	104, 110, 210, 328, 455
SalI	GTCGAC	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	2 cut(s)	459, 706
SatI	GCNGC	5 cut(s)	255, 314, 333, 405, 426
Sau3AI	GATC	4 cut(s)	58, 85, 229, 661
ScaI	AGTACT	1 cut(s)	211
SchI	GAGTC	5 cut(s)	35, 134, 185, 312, 439
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	524
SetI	ASST	9 cut(s)	47, 123, 243, 409, 415, 477, 600, 638, 690
SfaNI	GCATC	1 cut(s)	391
SgrAI	CRCCGGYG	1 cut(s)	309
Sse9I	AATT	3 cut(s)	79, 460, 502
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	258, 317
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	2 cut(s)	477, 600
TaqI	TCGA	2 cut(s)	495, 575
TasI	AATT	3 cut(s)	79, 460, 502
TatI	WGTACW	2 cut(s)	103, 209
TauI	GCSGC	3 cut(s)	257, 316, 335
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	459, 706
Tru9I	TTAA	2 cut(s)	459, 706
TseI	GCWGC	2 cut(s)	404, 425
TspDTI	ATGAA	5 cut(s)	249, 293, 515, 575, 593
TspGWI	ACGGA	1 cut(s)	177
XceI	RCATGY	1 cut(s)	76
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	2 cut(s)	153, 687
XspI	CTAG	1 cut(s)	410
ZrmI	AGTACT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.