Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002421

Physical Location & Seq

Genomic Coordinates Reverse (-)

1787589 .. 1788792

Gene Structure 1204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0022300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCGAATCCAAAGGTTTTCTTTGATGTACTGATTGGAAGGATGAAGGCGGGTCGCATTGTAATGGAGTTATTTGCTGATGTGACACCAAAAACTGCTGAGAACTTCCGTTCCCTTTGCACTGGTGATAAGGGGATCGGAATGTCTGGGAAGCCACTGCACTACAAGGGCTCTGTATTTCACCGCATTATCCCAAATTTCATGTGTCAAGGTGGAGATTTCACAAGAGGTAATGGGACTGGAGGAGAGTCCATCTATGGTGCAAAATTTGCAGATGAGAACTTCAAGCTGAAGCATACAGGACCCGGGATTCTGTCCATGGCAAATGCTGGACCGAACACTAATGGTTCTCAGTTCTTCATTTGCACAGAGAGGACCCCGTGGCTTGATGGAAAACATGTTGTGTTTGGGAAAGTGGTTGATGGTTATAGCGTTGTTCAAAAGATGGAAAAGGTTGGTTCAGATTCAGGGACGACTACAGAACCTGTGGTTATTGAAGATTGTGGTCAGATAACAGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0031668 GO:0033554 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0042221 GO:0042631 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0051716 GO:0055114 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071465 GO:0071496 GO:0071704 GO:0097305 GO:0104004 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

174

Amino Acids

18.82

Weight (kDa)

7.68

Isoelectric Point (pI)

18.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	16 - 169	3e-51	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26250 AT5G30500 AT5G30500
fragaria_vesca	FvH4_6g07920 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930
malus_domestica	MD04G1190900.v1.1
prunus_persica	Prupe.6G309400_v2.0.a1 Prupe.6G309400_v2.0.a1
pyrus_communis	pycom04g16850
rosa_chinensis	RchiOBHm_Chr3g0457621 RchiOBHm_Chr3g0457631
rosa_laevigata	RLG00000025200 RLG00000025202 RLG00000025203
rosa_multiflora	Rmu_co8471647.1_g000001 Rmu_sc0005321.1_g000010 Rmu_sc0005321.1_g000011 Rmu_sc0007395.1_g000007 Rmu_sc0007395.1_g000008
rosa_roxburghii	Rroxscaffold_6G00421650 Rroxscaffold_6G00421660 Rroxscaffold_6G00421670
rosa_rugosa	Rorug03G0022200 Rorug03G0022300 Rorug03G0022400
rosa_samantha	Rh3AG082600 Rh3AG082700 Rh3AG083000 Rh3BG084900 Rh3BG085000 Rh3BG085500 Rh3CG085100 Rh3CG085200 Rh3CG085700 Rh3DG086400 Rh3DG086500
rosa_wichuraiana	Rw3G007100 Rw3G007110

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	50, 184
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	196, 266
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	30
AflIII	ACRYGT	1 cut(s)	397
AgsI	TTSAA	3 cut(s)	286, 440, 497
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AlwI	GGATC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	196, 266
AspS9I	GGNCC	3 cut(s)	302, 332, 375
AsuC2I	CCSGG	2 cut(s)	306, 307
AsuHPI	GGTGA	2 cut(s)	137, 173
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	3 cut(s)	302, 332, 375
BanII	GRGCYC	1 cut(s)	173
BccI	CCATC	4 cut(s)	260, 383, 416, 439
BcnI	CCSGG	2 cut(s)	306, 307
BfmI	CTRYAG	1 cut(s)	477
Bme1390I	CCNGG	2 cut(s)	306, 307
Bme18I	GGWCC	3 cut(s)	302, 332, 375
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	3 cut(s)	302, 332, 375
BmiI	GGNNCC	2 cut(s)	304, 377
BmrFI	CCNGG	2 cut(s)	306, 307
BpmI	CTGGAG	1 cut(s)	261
BpuMI	CCSGG	2 cut(s)	306, 307
BsaJI	CCNNGG	3 cut(s)	305, 318, 380
Bse1I	ACTGG	2 cut(s)	127, 244
BseDI	CCNNGG	3 cut(s)	305, 318, 380
BseGI	GGATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	90, 365
BseNI	ACTGG	2 cut(s)	127, 244
BseRI	GAGGAG	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	250, 484
BsmFI	GGGAC	2 cut(s)	250, 484
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	2 cut(s)	50, 184
BspCNI	CTCAG	2 cut(s)	91, 364
BspLI	GGNNCC	2 cut(s)	304, 377
BspPI	GGATC	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	127, 244
BssECI	CCNNGG	3 cut(s)	305, 318, 380
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	99, 351
BstDSI	CCRYGG	2 cut(s)	318, 380
BstF5I	GGATG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	304, 305
BstSFI	CTRYAG	1 cut(s)	477
BtgI	CCRYGG	2 cut(s)	318, 380
BtsCI	GGATG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	120, 155
CaiI	CAGNNNCTG	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	302, 332, 375
Cfr9I	CCCGGG	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	202, 319, 398
CviJI	RGCY	4 cut(s)	154, 171, 289, 385
CviKI_1	RGCY	4 cut(s)	154, 171, 289, 385
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	99, 351
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	3 cut(s)	302, 332, 375
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	305
EcoO109I	RGGNCCY	2 cut(s)	302, 375
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	205, 322, 401
FaiI	YATR	6 cut(s)	203, 258, 297, 320, 399, 429
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	2 cut(s)	250, 484
FatI	CATG	3 cut(s)	201, 318, 397
FauI	CCCGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	261
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	3 cut(s)	205, 322, 401
HinfI	GANTC	4 cut(s)	7, 248, 310, 464
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	137, 173
Hpy188I	TCNGA	3 cut(s)	140, 463, 510
HpyAV	CCTTC	2 cut(s)	33, 40
HpyCH4V	TGCA	5 cut(s)	120, 160, 263, 272, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	99, 351
Hsp92II	CATG	3 cut(s)	205, 322, 401
Kzo9I	GATC	1 cut(s)	135
LpnPI	CCDG	8 cut(s)	108, 132, 225, 285, 315, 319, 453, 498
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	2 cut(s)	349, 509
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	2 cut(s)	196, 266
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	221, 236, 366
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	306, 307
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	2 cut(s)	306, 307
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	3 cut(s)	205, 322, 401
NlaIV	GGNNCC	2 cut(s)	304, 377
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	401
PciI	ACATGT	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	7, 310, 464
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
PpuMI	RGGWCCY	2 cut(s)	302, 375
PscI	ACATGT	1 cut(s)	397
Psp5II	RGGWCCY	2 cut(s)	302, 375
PspN4I	GGNNCC	2 cut(s)	304, 377
PspPI	GGNCC	3 cut(s)	302, 332, 375
PspPPI	RGGWCCY	2 cut(s)	302, 375
PstNI	CAGNNNCTG	1 cut(s)	485
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	62
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	3 cut(s)	302, 332, 375
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	306, 307
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	6 cut(s)	18, 214, 232, 291, 456, 487
SfcI	CTRYAG	1 cut(s)	477
SinI	GGWCC	3 cut(s)	302, 332, 375
SmaI	CCCGGG	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	196, 266
SsiI	CCGC	2 cut(s)	50, 184
StyD4I	CCNGG	2 cut(s)	304, 305
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	1 cut(s)	349
TasI	AATT	2 cut(s)	196, 266
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	7, 310, 464
TscAI	CASTG	2 cut(s)	127, 162
TseFI	GTSAC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	59, 190, 349
TspGWI	ACGGA	1 cut(s)	98
TspMI	CCCGGG	1 cut(s)	305
TspRI	CASTG	2 cut(s)	127, 162
VpaK11BI	GGWCC	3 cut(s)	302, 332, 375
XapI	RAATTY	2 cut(s)	196, 266
XceI	RCATGY	1 cut(s)	401
XmaI	CCCGGG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.