Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002421

Physical Location & Seq

Genomic Coordinates Reverse (-)

19439626 .. 19441196

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16850.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTCCTGAGATCACCACCCCCACCGCCGCTATTGCTGCCACCAAACCACCAAGCGGCCCCAATAGGGCCTACGTCACCTTCTTGGCCGGTGCGGGAGACTACTGGAAAGGAGTTGTTGGCTTGGCCAAGGGGCTAAGAAAAGTGAAGAGCAAGTACCCGCTTGTTGTGGCCATGCTGCCCGACGTCCCCGAAGAGCACCGCCGGATTCTGATCTCTCAGGGCTGTGTGCTCAGAGAGATCGAGCCTGTGTACCCTCCTCCCAACCAGACCCAGTTCGCCATGGCCTACTACGTCATCAACTACTCCAAGCTTCGCATTTGGGAGTTTGTGGAGTACAGCAAGATGATCTATTTGGACGGAGATATTCAAGTTTTTAAGAAGATCGATCACCTCTTTGACTACCCGGACAACTACTTCTATGCCGTGAAGGACTGCTTCTGTGAGCCAACTTGGAGCAGTAGCCCACAGTATAAGATAGGGTACTGCCAGCAGTGCCCTAATAAGGTCCAGTGGGACCCTAAGTTGGGCCCCAGGCCTCCTCTTTATTTCAATGCTGGCATGTTTGTGTATGAGCCAAGCTTGCCGGTCTACCATGACCTCCTCAAAACCCTCCAGATTTCTCCCACCACATCTTTTGCCGAGCAGGACTTCTTGAACGTGTATTTCAGGGACAAATACAAGCCCATCCCTTCAAATTACAACCTTGTGTTGGCCATGTTATGGCGTCACCCCGATAACATTCAACTTGACCAAGTAAAAGTTGTTCACTATTGTGCCAACGGTTCTAAGCCATGGAGATACACCGGGAAGGAGGAGAACATGGAGAGGGAAGACATTAAGATGCTGGTGAAGAAATGGTGGGATATTTACGACGATGAGTCATTGGACTACAAGAATACCGTGGTTTCAACTGAGGCTGATGTGCAGCCATTCAAGGAGGCGGCCCTATCGGAGGCTGGCGTTCCCGACTTCGCTACCGCCCCATCTGCCGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0031668 GO:0033554 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0042221 GO:0042631 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0051716 GO:0055114 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071465 GO:0071496 GO:0071704 GO:0097305 GO:0104004 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

333

Amino Acids

38.14

Weight (kDa)

6.02

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26250 AT5G30500 AT5G30500
fragaria_vesca	FvH4_6g07920 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930
malus_domestica	MD04G1190900.v1.1
prunus_persica	Prupe.6G309400_v2.0.a1 Prupe.6G309400_v2.0.a1
pyrus_communis	pycom04g16850
rosa_chinensis	RchiOBHm_Chr3g0457621 RchiOBHm_Chr3g0457631
rosa_laevigata	RLG00000025200 RLG00000025202 RLG00000025203
rosa_multiflora	Rmu_co8471647.1_g000001 Rmu_sc0005321.1_g000010 Rmu_sc0005321.1_g000011 Rmu_sc0007395.1_g000007 Rmu_sc0007395.1_g000008
rosa_roxburghii	Rroxscaffold_6G00421650 Rroxscaffold_6G00421660 Rroxscaffold_6G00421670
rosa_rugosa	Rorug03G0022200 Rorug03G0022300 Rorug03G0022400
rosa_samantha	Rh3AG082600 Rh3AG082700 Rh3AG083000 Rh3BG084900 Rh3BG085000 Rh3BG085500 Rh3CG085100 Rh3CG085200 Rh3CG085700 Rh3DG086400 Rh3DG086500
rosa_wichuraiana	Rw3G007100 Rw3G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	723
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	9 cut(s)	27, 30, 57, 95, 161, 202, 944, 981, 993
AcoI	YGGCCR	4 cut(s)	87, 126, 171, 714
AcyI	GRCGYC	2 cut(s)	186, 727
AfaI	GTAC	4 cut(s)	158, 254, 338, 485
AfiI	CCNNNNNNNGG	8 cut(s)	56, 67, 505, 526, 527, 712, 723, 955
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	7 cut(s)	371, 553, 658, 696, 746, 912, 937
AhdI	GACNNNNNGTC	1 cut(s)	880
AjnI	CCWGG	1 cut(s)	533
AleI	CACNNNNGTG	1 cut(s)	774
AluBI	AGCT	2 cut(s)	313, 582
AluI	AGCT	2 cut(s)	313, 582
Alw21I	GWGCWC	2 cut(s)	201, 234
Alw26I	GTCTC	1 cut(s)	93
ApaI	GGGCCC	1 cut(s)	533
ApeKI	GCWGC	3 cut(s)	38, 178, 928
AspS9I	GGNCC	7 cut(s)	59, 69, 508, 517, 529, 530, 946
AsuC2I	CCSGG	2 cut(s)	407, 808
AsuHPI	GGTGA	5 cut(s)	7, 70, 383, 722, 862
AvaII	GGWCC	2 cut(s)	508, 517
BaeGI	GKGCMC	2 cut(s)	500, 533
BalI	TGGCCA	3 cut(s)	128, 173, 716
BanII	GRGCYC	1 cut(s)	533
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	2 cut(s)	201, 234
BbvI	GCAGC	3 cut(s)	25, 165, 940
BccI	CCATC	2 cut(s)	695, 994
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	407, 808
BcoDI	GTCTC	1 cut(s)	93
BisI	GCNGC	7 cut(s)	30, 39, 58, 179, 929, 945, 993
BlsI	GCNGC	7 cut(s)	31, 40, 59, 180, 930, 946, 994
Bme1390I	CCNGG	3 cut(s)	407, 535, 808
Bme18I	GGWCC	2 cut(s)	508, 517
BmeRI	GACNNNNNGTC	1 cut(s)	880
BmgT120I	GGNCC	7 cut(s)	59, 69, 508, 517, 529, 530, 946
BmiI	GGNNCC	6 cut(s)	6, 61, 518, 519, 531, 532
BmrFI	CCNGG	3 cut(s)	407, 535, 808
BmrI	ACTGGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	834
BmuI	ACTGGG	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	840
BpmI	CTGGAG	1 cut(s)	599
BpuMI	CCSGG	2 cut(s)	407, 808
Bsa29I	ATCGAT	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	212
BsaHI	GRCGYC	2 cut(s)	186, 727
BsaJI	CCNNGG	5 cut(s)	129, 282, 533, 794, 903
Bsc4I	CCNNNNNNNGG	8 cut(s)	56, 67, 505, 526, 527, 712, 723, 955
Bse118I	RCCGGY	2 cut(s)	89, 586
Bse1I	ACTGG	3 cut(s)	110, 274, 511
Bse8I	GATNNNNATC	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	535
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	5 cut(s)	129, 282, 533, 794, 903
BseGI	GGATG	1 cut(s)	687
BseJI	GATNNNNATC	1 cut(s)	212
BseLI	CCNNNNNNNGG	8 cut(s)	56, 67, 505, 526, 527, 712, 723, 955
BseMII	CTCAG	3 cut(s)	233, 247, 906
BseNI	ACTGG	3 cut(s)	110, 274, 511
BseRI	GAGGAG	4 cut(s)	249, 531, 593, 830
BseSI	GKGCMC	2 cut(s)	500, 533
BseXI	GCAGC	3 cut(s)	25, 165, 940
BsgI	GTGCAG	1 cut(s)	947
BshVI	ATCGAT	1 cut(s)	387
BsiHKAI	GWGCWC	2 cut(s)	201, 234
BsiSI	CCGG	5 cut(s)	90, 205, 407, 587, 807
BslFI	GGGAC	3 cut(s)	173, 530, 686
BslI	CCNNNNNNNGG	8 cut(s)	56, 67, 505, 526, 527, 712, 723, 955
BsmAI	GTCTC	1 cut(s)	93
BsmFI	GGGAC	3 cut(s)	173, 530, 686
Bsp120I	GGGCCC	1 cut(s)	529
Bsp1286I	GDGCHC	4 cut(s)	201, 234, 500, 533
Bsp143I	GATC	6 cut(s)	12, 213, 240, 348, 384, 388
Bsp19I	CCATGG	2 cut(s)	282, 794
BspACI	CCGC	9 cut(s)	27, 30, 57, 95, 161, 202, 944, 981, 993
BspCNI	CTCAG	3 cut(s)	232, 246, 907
BspDI	ATCGAT	1 cut(s)	387
BspLI	GGNNCC	6 cut(s)	6, 61, 518, 519, 531, 532
BspQI	GCTCTTC	2 cut(s)	143, 189
BsrFI	RCCGGY	2 cut(s)	89, 586
BsrI	ACTGG	3 cut(s)	110, 274, 511
BssAI	RCCGGY	2 cut(s)	89, 586
BssECI	CCNNGG	5 cut(s)	129, 282, 533, 794, 903
BssMI	GATC	6 cut(s)	12, 213, 240, 348, 384, 388
BssNI	GRCGYC	2 cut(s)	186, 727
BssT1I	CCWWGG	3 cut(s)	129, 282, 794
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	3 cut(s)	471, 785, 904
Bst6I	CTCTTC	2 cut(s)	143, 189
BstACI	GRCGYC	2 cut(s)	186, 727
BstC8I	GCNNGC	4 cut(s)	491, 559, 584, 961
BstDEI	CTNAG	7 cut(s)	9, 137, 219, 233, 522, 789, 915
BstDSI	CCRYGG	3 cut(s)	282, 794, 903
BstENI	CCTNNNNNAGG	1 cut(s)	953
BstF5I	GGATG	1 cut(s)	687
BstKTI	GATC	6 cut(s)	15, 216, 243, 351, 387, 391
BstMAI	GTCTC	1 cut(s)	93
BstMBI	GATC	6 cut(s)	12, 213, 240, 348, 384, 388
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 38, 495, 583, 989
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	3 cut(s)	405, 533, 806
BstSLI	GKGCMC	2 cut(s)	500, 533
BstV1I	GCAGC	3 cut(s)	25, 165, 940
BstV2I	GAAGAC	1 cut(s)	840
Bsu15I	ATCGAT	1 cut(s)	387
BsuTUI	ATCGAT	1 cut(s)	387
BtgI	CCRYGG	3 cut(s)	282, 794, 903
BtsCI	GGATG	1 cut(s)	687
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	2 cut(s)	500, 518
Cac8I	GCNNGC	4 cut(s)	491, 559, 584, 961
Cfr10I	RCCGGY	2 cut(s)	89, 586
Cfr13I	GGNCC	7 cut(s)	59, 69, 508, 517, 529, 530, 946
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	716
Csp6I	GTAC	4 cut(s)	157, 253, 337, 484
CspCI	CAANNNNNGTGG	2 cut(s)	619, 654
CviAII	CATG	7 cut(s)	175, 283, 562, 596, 718, 795, 823
CviQI	GTAC	4 cut(s)	157, 253, 337, 484
DdeI	CTNAG	7 cut(s)	9, 137, 219, 233, 522, 789, 915
DpnI	GATC	6 cut(s)	14, 215, 242, 350, 386, 390
DpnII	GATC	6 cut(s)	12, 213, 240, 348, 384, 388
DriI	GACNNNNNGTC	1 cut(s)	880
EaeI	YGGCCR	4 cut(s)	87, 126, 171, 714
Eam1104I	CTCTTC	2 cut(s)	143, 189
Eam1105I	GACNNNNNGTC	1 cut(s)	880
EarI	CTCTTC	2 cut(s)	143, 189
Eco130I	CCWWGG	3 cut(s)	129, 282, 794
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	533
Eco47I	GGWCC	2 cut(s)	508, 517
EcoNI	CCTNNNNNAGG	1 cut(s)	953
EcoO109I	RGGNCCY	3 cut(s)	69, 517, 530
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	3 cut(s)	129, 282, 794
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	3 cut(s)	129, 282, 794
FaeI	CATG	7 cut(s)	178, 286, 565, 599, 721, 798, 826
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	3 cut(s)	173, 530, 686
FatI	CATG	7 cut(s)	174, 282, 561, 595, 717, 794, 822
FauI	CCCGC	2 cut(s)	88, 168
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	7 cut(s)	30, 39, 58, 179, 929, 945, 993
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	7 cut(s)	30, 39, 58, 179, 929, 945, 993
GluI	GCNGC	7 cut(s)	30, 39, 58, 179, 929, 945, 993
GsuI	CTGGAG	1 cut(s)	599
HapII	CCGG	5 cut(s)	90, 205, 407, 587, 807
HgaI	GACGC	1 cut(s)	716
Hin1I	GRCGYC	2 cut(s)	186, 727
Hin1II	CATG	7 cut(s)	178, 286, 565, 599, 721, 798, 826
HindIII	AAGCTT	2 cut(s)	311, 580
HinfI	GANTC	2 cut(s)	208, 881
HpaII	CCGG	5 cut(s)	90, 205, 407, 587, 807
HphI	GGTGA	5 cut(s)	7, 70, 383, 722, 862
Hpy166II	GTNNAC	3 cut(s)	253, 592, 769
Hpy188I	TCNGA	3 cut(s)	213, 236, 955
Hpy188III	TCNNGA	4 cut(s)	8, 616, 655, 968
Hpy8I	GTNNAC	3 cut(s)	253, 592, 769
Hpy99I	CGWCG	2 cut(s)	188, 878
HpyAV	CCTTC	4 cut(s)	91, 424, 702, 805
HpyCH4III	ACNGT	3 cut(s)	471, 785, 904
HpyCH4IV	ACGT	4 cut(s)	75, 186, 294, 660
HpyCH4V	TGCA	1 cut(s)	928
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 38, 495, 583, 989
HpyF3I	CTNAG	7 cut(s)	9, 137, 219, 233, 522, 789, 915
HpySE526I	ACGT	4 cut(s)	75, 186, 294, 660
Hsp92I	GRCGYC	2 cut(s)	186, 727
Hsp92II	CATG	7 cut(s)	178, 286, 565, 599, 721, 798, 826
KflI	GGGWCCC	1 cut(s)	517
Kzo9I	GATC	6 cut(s)	12, 213, 240, 348, 384, 388
LguI	GCTCTTC	2 cut(s)	143, 189
LmnI	GCTCC	2 cut(s)	10, 456
Lsp1109I	GCAGC	3 cut(s)	25, 165, 940
LweI	GCATC	1 cut(s)	834
MaeII	ACGT	4 cut(s)	75, 186, 294, 660
MaeIII	GTNAC	2 cut(s)	76, 728
MalI	GATC	6 cut(s)	14, 215, 242, 350, 386, 390
MboI	GATC	6 cut(s)	12, 213, 240, 348, 384, 388
MboII	GAAGA	5 cut(s)	160, 206, 394, 845, 865
MhlI	GDGCHC	4 cut(s)	201, 234, 500, 533
MlsI	TGGCCA	3 cut(s)	128, 173, 716
MluCI	AATT	1 cut(s)	697
MluNI	TGGCCA	3 cut(s)	128, 173, 716
MlyI	GAGTC	1 cut(s)	890
Mox20I	TGGCCA	3 cut(s)	128, 173, 716
MscI	TGGCCA	3 cut(s)	128, 173, 716
MseI	TTAA	3 cut(s)	378, 840, 997
MslI	CAYNNNNRTG	3 cut(s)	566, 774, 842
Msp20I	TGGCCA	3 cut(s)	128, 173, 716
MspI	CCGG	5 cut(s)	90, 205, 407, 587, 807
MspR9I	CCNGG	3 cut(s)	407, 535, 808
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	5 cut(s)	35, 38, 495, 583, 989
NciI	CCSGG	2 cut(s)	407, 808
NcoI	CCATGG	2 cut(s)	282, 794
NdeII	GATC	6 cut(s)	12, 213, 240, 348, 384, 388
NlaIII	CATG	7 cut(s)	178, 286, 565, 599, 721, 798, 826
NlaIV	GGNNCC	6 cut(s)	6, 61, 518, 519, 531, 532
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	2 cut(s)	76, 728
NspI	RCATGY	1 cut(s)	565
OliI	CACNNNNGTG	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	538
PciSI	GCTCTTC	2 cut(s)	143, 189
PfeI	GAWTC	1 cut(s)	208
PflMI	CCANNNNNTGG	1 cut(s)	723
PkrI	GCNGC	7 cut(s)	31, 40, 59, 180, 930, 946, 994
PleI	GAGTC	1 cut(s)	889
PpsI	GAGTC	1 cut(s)	889
PpuMI	RGGWCCY	1 cut(s)	517
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	6 cut(s)	6, 61, 518, 519, 531, 532
PspOMI	GGGCCC	1 cut(s)	529
PspPI	GGNCC	7 cut(s)	59, 69, 508, 517, 529, 530, 946
PspPPI	RGGWCCY	1 cut(s)	517
PsrI	GAACNNNNNNTAC	2 cut(s)	750, 782
RsaI	GTAC	4 cut(s)	158, 254, 338, 485
RsaNI	GTAC	4 cut(s)	157, 253, 337, 484
RseI	CAYNNNNRTG	3 cut(s)	566, 774, 842
SapI	GCTCTTC	2 cut(s)	143, 189
SaqAI	TTAA	3 cut(s)	378, 840, 997
SatI	GCNGC	7 cut(s)	30, 39, 58, 179, 929, 945, 993
Sau3AI	GATC	6 cut(s)	12, 213, 240, 348, 384, 388
Sau96I	GGNCC	7 cut(s)	59, 69, 508, 517, 529, 530, 946
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	3 cut(s)	407, 535, 808
SduI	GDGCHC	4 cut(s)	201, 234, 500, 533
SfaNI	GCATC	1 cut(s)	834
SinI	GGWCC	2 cut(s)	508, 517
SmiMI	CAYNNNNRTG	3 cut(s)	566, 774, 842
Sse9I	AATT	1 cut(s)	697
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	9 cut(s)	27, 30, 57, 95, 161, 202, 944, 981, 993
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	405, 533, 806
StyI	CCWWGG	3 cut(s)	129, 282, 794
TaaI	ACNGT	3 cut(s)	471, 785, 904
TaiI	ACGT	4 cut(s)	78, 189, 297, 663
TaqI	TCGA	2 cut(s)	243, 387
TasI	AATT	1 cut(s)	697
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	4 cut(s)	32, 60, 947, 995
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	378, 840, 997
Tru9I	TTAA	3 cut(s)	378, 840, 997
TscAI	CASTG	2 cut(s)	500, 518
TseFI	GTSAC	2 cut(s)	76, 728
TseI	GCWGC	3 cut(s)	38, 178, 928
Tsp45I	GTSAC	2 cut(s)	76, 728
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	2 cut(s)	500, 518
Van91I	CCANNNNNTGG	1 cut(s)	723
VpaK11BI	GGWCC	2 cut(s)	508, 517
XagI	CCTNNNNNAGG	1 cut(s)	953
XceI	RCATGY	1 cut(s)	565
XmiI	GTMKAC	1 cut(s)	591
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.