Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002421

Physical Location & Seq

Genomic Coordinates Forward (+)

4718200 .. 4719953

Gene Structure 1754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATCGGGTTTTTTGTGTTGCAGTTTGTGGAGTATAGCAAGATGATCTACTTGGACGGTGATATCCAAGTTTTTCAGAACATTGACCACTTGTTTGACTACCCGGACAACTACTTCTATGCTGTGATGGATTGCTTTTGTGAGACCAATTGGAGGGATAGTCCCCAGTTCAAGATTGGGTACTGCCAGCAGTGCCCCGACAGGGTACAATGGGATAATAGCTTGGGTCCCAAGCCTCCTTTGTATTTCAATGCTGGCATGTTCGTTTACGAGCCAAACTTGTCTACTTACCATGATCTCTTGAGCACCCTCAAGACTTCTACTCCTACTTTGTTTGCTGAGCAGGATTTCTTGAATGTGTTCTTTAGGGACAAGTACGTGCCTATCCCTTCAAACTACAACCTTGTGTTGGCTATGCTGTGGCGCCACCCTGAAAACATTGAGCTAGAGAAGGTCAAAGTTGTCCACTATTGTGCTAATGGTTCTAAGCCATGGAGGTACAATGGAGAAGGGGAGAATATGGAGCGAGAAGACATCAAGATGCTGGTGAAGAAATGGTGGGAGATTTATGATGACGAGTCCTTGGATTACCAGAATTGCATCGGTGCTGCCGAGTCTGGAAATGGCACCGAGCAAGTTAACCTGCAGCCATTTGTGGCGGCACTGTCGAAGGCTGGCCATGTTAATTTTATTCCCGCCCCATCAGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0031668 GO:0033554 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0042221 GO:0042631 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0051716 GO:0055114 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071465 GO:0071496 GO:0071704 GO:0097305 GO:0104004 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

238

Amino Acids

27.56

Weight (kDa)

4.71

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	9 - 168	1.8e-29	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26250 AT5G30500 AT5G30500
fragaria_vesca	FvH4_6g07920 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930
malus_domestica	MD04G1190900.v1.1
prunus_persica	Prupe.6G309400_v2.0.a1 Prupe.6G309400_v2.0.a1
pyrus_communis	pycom04g16850
rosa_chinensis	RchiOBHm_Chr3g0457621 RchiOBHm_Chr3g0457631
rosa_laevigata	RLG00000025200 RLG00000025202 RLG00000025203
rosa_multiflora	Rmu_co8471647.1_g000001 Rmu_sc0005321.1_g000010 Rmu_sc0005321.1_g000011 Rmu_sc0007395.1_g000007 Rmu_sc0007395.1_g000008
rosa_roxburghii	Rroxscaffold_6G00421650 Rroxscaffold_6G00421660 Rroxscaffold_6G00421670
rosa_rugosa	Rorug03G0022200 Rorug03G0022300 Rorug03G0022400
rosa_samantha	Rh3AG082600 Rh3AG082700 Rh3AG083000 Rh3BG084900 Rh3BG085000 Rh3BG085500 Rh3CG085100 Rh3CG085200 Rh3CG085700 Rh3DG086400 Rh3DG086500
rosa_wichuraiana	Rw3G007100 Rw3G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	651
AccB1I	GGYRCC	2 cut(s)	423, 626
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	2 cut(s)	659, 696
AcoI	YGGCCR	1 cut(s)	676
AcyI	GRCGYC	1 cut(s)	424
AfaI	GTAC	4 cut(s)	182, 207, 377, 500
AfiI	CCNNNNNNNGG	3 cut(s)	153, 202, 409
AgsI	TTSAA	4 cut(s)	172, 250, 355, 393
AleI	CACNNNNGTG	1 cut(s)	471
AluBI	AGCT	3 cut(s)	222, 445, 707
AluI	AGCT	3 cut(s)	222, 445, 707
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	3 cut(s)	608, 646, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
Asp700I	GAANNNNTTC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	71, 559
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	197
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	2 cut(s)	423, 626
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	595, 658, 694
BccI	CCATC	2 cut(s)	121, 709
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	446, 712
BfmI	CTRYAG	1 cut(s)	644
BfoI	RGCGCY	1 cut(s)	427
BfuAI	ACCTGC	1 cut(s)	651
BisI	GCNGC	4 cut(s)	609, 647, 660, 708
BlpI	GCTNAGC	1 cut(s)	339
BlsI	GCNGC	4 cut(s)	610, 648, 661, 709
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	4 cut(s)	228, 229, 425, 628
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	531, 609
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	296, 322
BpuMI	CCSGG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	379
BsaHI	GRCGYC	1 cut(s)	424
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	491, 582
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 307, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 202, 409
Bse1I	ACTGG	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	491, 582
BseLI	CCNNNNNNNGG	3 cut(s)	153, 202, 409
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	166
BseSI	GKGCMC	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	595, 658, 694
BshFI	GGCC	1 cut(s)	678
BshNI	GGYRCC	2 cut(s)	423, 626
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	3 cut(s)	147, 213, 383
BslI	CCNNNNNNNGG	3 cut(s)	153, 202, 409
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	3 cut(s)	147, 213, 383
BsnI	GGCC	1 cut(s)	678
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	197, 308
Bsp143I	GATC	3 cut(s)	3, 45, 295
Bsp1720I	GCTNAGC	1 cut(s)	339
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	2 cut(s)	659, 696
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	4 cut(s)	228, 229, 425, 628
BspMAI	CTGCAG	1 cut(s)	648
BspMI	ACCTGC	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	423, 626
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	491, 582
BssMI	GATC	3 cut(s)	3, 45, 295
BssNI	GRCGYC	1 cut(s)	424
BssT1I	CCWWGG	2 cut(s)	491, 582
Bst4CI	ACNGT	2 cut(s)	59, 666
BstACI	GRCGYC	1 cut(s)	424
BstBAI	YACGTR	1 cut(s)	379
BstC8I	GCNNGC	3 cut(s)	188, 256, 676
BstDEI	CTNAG	2 cut(s)	339, 486
BstDSI	CCRYGG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	3 cut(s)	6, 48, 298
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	3, 45, 295
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 704
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	644
BstSLI	GKGCMC	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	595, 658, 694
BstV2I	GAAGAC	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	678
BtgI	CCRYGG	1 cut(s)	491
BtsI	GCAGTG	1 cut(s)	197
BtsIMutI	CAGTG	2 cut(s)	197, 662
BveI	ACCTGC	1 cut(s)	651
Cac8I	GCNNGC	3 cut(s)	188, 256, 676
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	4 cut(s)	181, 206, 376, 499
CviAII	CATG	4 cut(s)	259, 293, 492, 680
CviQI	GTAC	4 cut(s)	181, 206, 376, 499
DdeI	CTNAG	2 cut(s)	339, 486
DinI	GGCGCC	1 cut(s)	425
DpnI	GATC	3 cut(s)	5, 47, 297
DpnII	GATC	3 cut(s)	3, 45, 295
EaeI	YGGCCR	1 cut(s)	676
Eco130I	CCWWGG	2 cut(s)	491, 582
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	491, 582
EgeI	GGCGCC	1 cut(s)	425
EheI	GGCGCC	1 cut(s)	425
ErhI	CCWWGG	2 cut(s)	491, 582
FaeI	CATG	4 cut(s)	262, 296, 495, 683
FaiI	YATR	9 cut(s)	36, 120, 260, 294, 416, 493, 521, 570, 681
FaqI	GGGAC	3 cut(s)	147, 213, 383
FatI	CATG	4 cut(s)	258, 292, 491, 679
FauI	CCCGC	1 cut(s)	703
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	4 cut(s)	609, 647, 660, 708
Fsp4HI	GCNGC	4 cut(s)	609, 647, 660, 708
FspBI	CTAG	2 cut(s)	446, 712
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	4 cut(s)	609, 647, 660, 708
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	262, 296, 495, 683
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	2 cut(s)	578, 614
HpaI	GTTAAC	1 cut(s)	640
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	71, 559
Hpy166II	GTNNAC	4 cut(s)	268, 285, 466, 640
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	6 cut(s)	172, 301, 313, 352, 538, 618
Hpy8I	GTNNAC	4 cut(s)	268, 285, 466, 640
HpyAV	CCTTC	4 cut(s)	399, 445, 503, 664
HpyCH4III	ACNGT	2 cut(s)	59, 666
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	3 cut(s)	22, 600, 646
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 704
HpyF3I	CTNAG	2 cut(s)	339, 486
HpySE526I	ACGT	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	424
Hsp92II	CATG	4 cut(s)	262, 296, 495, 683
HspAI	GCGC	1 cut(s)	424
KasI	GGCGCC	1 cut(s)	423
KflI	GGGWCCC	1 cut(s)	227
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	3 cut(s)	3, 45, 295
LmnI	GCTCC	1 cut(s)	523
Lsp1109I	GCAGC	3 cut(s)	595, 658, 694
LweI	GCATC	2 cut(s)	531, 609
MaeI	CTAG	2 cut(s)	446, 712
MaeII	ACGT	1 cut(s)	378
MalI	GATC	3 cut(s)	5, 47, 297
MboI	GATC	3 cut(s)	3, 45, 295
MboII	GAAGA	2 cut(s)	542, 562
MfeI	CAATTG	1 cut(s)	148
MhlI	GDGCHC	2 cut(s)	197, 308
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	3 cut(s)	148, 595, 685
MluNI	TGGCCA	1 cut(s)	678
Mly113I	GGCGCC	1 cut(s)	424
MlyI	GAGTC	2 cut(s)	587, 623
MnlI	CCTC	4 cut(s)	147, 246, 320, 489
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	639, 684
MslI	CAYNNNNRTG	2 cut(s)	471, 539
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	192, 704
NarI	GGCGCC	1 cut(s)	424
NciI	CCSGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	3 cut(s)	3, 45, 295
NlaIII	CATG	4 cut(s)	262, 296, 495, 683
NlaIV	GGNNCC	4 cut(s)	228, 229, 425, 628
NmeAIII	GCCGAG	1 cut(s)	637
NspI	RCATGY	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	609
PdmI	GAANNNNTTC	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	610, 648, 661, 709
PleI	GAGTC	2 cut(s)	586, 622
PluTI	GGCGCC	1 cut(s)	427
PpsI	GAGTC	2 cut(s)	586, 622
Ppu21I	YACGTR	1 cut(s)	379
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
PspN4I	GGNNCC	4 cut(s)	228, 229, 425, 628
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	648
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	4 cut(s)	182, 207, 377, 500
RsaNI	GTAC	4 cut(s)	181, 206, 376, 499
RseI	CAYNNNNRTG	2 cut(s)	471, 539
SaqAI	TTAA	2 cut(s)	639, 684
SatI	GCNGC	4 cut(s)	609, 647, 660, 708
Sau3AI	GATC	3 cut(s)	3, 45, 295
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	2 cut(s)	587, 623
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	197, 308
SetI	ASST	8 cut(s)	224, 381, 405, 447, 456, 500, 645, 709
SfaNI	GCATC	2 cut(s)	531, 609
SfcI	CTRYAG	1 cut(s)	644
SfoI	GGCGCC	1 cut(s)	425
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	2 cut(s)	471, 539
SmlI	CTYRAG	2 cut(s)	301, 311
SmoI	CTYRAG	2 cut(s)	301, 311
Sse9I	AATT	3 cut(s)	148, 595, 685
SsiI	CCGC	2 cut(s)	659, 696
SspDI	GGCGCC	1 cut(s)	423
SspMI	CTAG	2 cut(s)	446, 712
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	491, 582
TaaI	ACNGT	2 cut(s)	59, 666
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	1 cut(s)	668
TasI	AATT	3 cut(s)	148, 595, 685
TauI	GCSGC	1 cut(s)	662
Tru1I	TTAA	2 cut(s)	639, 684
Tru9I	TTAA	2 cut(s)	639, 684
TscAI	CASTG	2 cut(s)	197, 669
TseI	GCWGC	3 cut(s)	608, 646, 707
TspRI	CASTG	2 cut(s)	197, 669
VpaK11BI	GGWCC	1 cut(s)	227
XceI	RCATGY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	2 cut(s)	446, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.