Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002421

Physical Location & Seq

Genomic Coordinates Forward (+)

11615250 .. 11617170

Gene Structure 1921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G30500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCACCAACGGAGATGAACATCGAAAGAAAGGTAGAGGCTGACGTGGCGGTGATTCCTAATGATGGAAAAAGGGCTTACGTCACTTTCCTAGCTGGTAACCAAGACTATTGGATGGGTGTGGTTGGTTTAGCCAAGGGACTTCGTAAGGTGAAAGCAGCTTATCCTCTTGTTGTGGCTATGCTCCCAGACGTACCGAAAGAACACCGTCAAATCTTGGTGGCTCAAGGATGTATCATCCGGGAGATTGAACCGGTTTATCCGCCGGAAAACCAAGCTGGTTATGCTATGGCTTATTACGTTATCAACTACTCCAAGCTTCGAATTTGGGAGTTTGTGGAATATGAGAAGATGATATATTTAGATGGAGACATACAAGTGTTTAGCAACATCGATCATCTATTTGACACTCCATCTGGCTACTTGTACGCCGTCAAAGACTGTTTTTGCGAGGGTTCTTGGTCAAAAACACCTCAATACAAGATTGGTTACTGCCAACAGTCGCCCGAAAAAGTGAGGTGGCCGATGAACAGTCTTGGTCATGTGCCGCCATTGTATTTCAACGCGGGTATGTTGGTCTTTGAACCAAATCTCCTCACTTACGAGGATCTTCTTCAAACTGTTCAAGTCACCACTCCTACTTCATTCGCCGAACAGCCAATCCCTTCGACGTACAACCTCGTACTAGCTATGCTTTGGCGTCATCCCGAATGCATTGACCTCGACCAAATCAATGTTGTTCATTATTGTGCTAAAGGCTCAAAACCTTGGAGATTCACTGGAGAAGAGGAGCATATGGACCGAGAAGATATTAAAATGTTGGTGAAAAAATGGTGGGACATTTATGAAGACACGAGTTTAGACTACAAGACATTTGTTGAGAACGAGTCGAAGCTGAATCCGATCGTTGCAGCCTTGGCCTCTAAAGAATCAGGTTGTGATGGTCTTACTAGCCTCGCTCCTTCCGCCGCAAAATCAAATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005775 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006810 GO:0006887 GO:0006955 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009987 GO:0012505 GO:0015980 GO:0016051 GO:0016192 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030141 GO:0030246 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032940 GO:0033692 GO:0034637 GO:0034645 GO:0034774 GO:0035250 GO:0035251 GO:0036094 GO:0036230 GO:0042119 GO:0043170 GO:0043202 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046527 GO:0046903 GO:0047216 GO:0048029 GO:0050896 GO:0051179 GO:0051234 GO:0055114 GO:0060205 GO:0070013 GO:0071704 GO:0097708 GO:0099503 GO:0101002 GO:1901576 GO:1904813

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

328

Amino Acids

37.36

Weight (kDa)

5.11

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	29 - 211	4.3e-34	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26250 AT5G30500 AT5G30500
fragaria_vesca	FvH4_6g07920 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930
malus_domestica	MD04G1190900.v1.1
prunus_persica	Prupe.6G309400_v2.0.a1 Prupe.6G309400_v2.0.a1
pyrus_communis	pycom04g16850
rosa_chinensis	RchiOBHm_Chr3g0457621 RchiOBHm_Chr3g0457631
rosa_laevigata	RLG00000025200 RLG00000025202 RLG00000025203
rosa_multiflora	Rmu_co8471647.1_g000001 Rmu_sc0005321.1_g000010 Rmu_sc0005321.1_g000011 Rmu_sc0007395.1_g000007 Rmu_sc0007395.1_g000008
rosa_roxburghii	Rroxscaffold_6G00421650 Rroxscaffold_6G00421660 Rroxscaffold_6G00421670
rosa_rugosa	Rorug03G0022200 Rorug03G0022300 Rorug03G0022400
rosa_samantha	Rh3AG082600 Rh3AG082700 Rh3AG083000 Rh3BG084900 Rh3BG085000 Rh3BG085500 Rh3CG085100 Rh3CG085200 Rh3CG085700 Rh3DG086400 Rh3DG086500
rosa_wichuraiana	Rw3G007100 Rw3G007110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	566
AciI	CCGC	6 cut(s)	50, 263, 548, 566, 966, 969
AclWI	GGATC	1 cut(s)	615
AcoI	YGGCCR	1 cut(s)	521
AcsI	RAATTY	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	700
AfaI	GTAC	4 cut(s)	195, 428, 674, 684
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	253
AgsI	TTSAA	5 cut(s)	251, 562, 584, 617, 626
AjiI	CACGTC	1 cut(s)	46
AloI	GAACNNNNNNTCC	4 cut(s)	576, 608, 645, 677
AluBI	AGCT	6 cut(s)	95, 161, 278, 319, 689, 895
AluI	AGCT	6 cut(s)	95, 161, 278, 319, 689, 895
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	615
AoxI	GGCC	2 cut(s)	521, 918
ApeKI	GCWGC	2 cut(s)	158, 911
ApoI	RAATTY	1 cut(s)	324
AsiGI	ACCGGT	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	799
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	4 cut(s)	64, 163, 622, 835
AsuII	TTCGAA	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	853
BbsI	GAAGAC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	170, 923
BccI	CCATC	5 cut(s)	59, 109, 359, 421, 935
BceAI	ACGGC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	703, 737
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	3 cut(s)	92, 686, 951
BisI	GCNGC	4 cut(s)	159, 548, 912, 969
BlsI	GCNGC	4 cut(s)	160, 549, 913, 970
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	799
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	799
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	855
BpmI	CTGGAG	1 cut(s)	801
Bpu14I	TTCGAA	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	700
BsaJI	CCNNGG	3 cut(s)	135, 767, 915
BsaWI	WCCGGW	1 cut(s)	253
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	20
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	135, 767, 915
BseGI	GGATG	4 cut(s)	120, 236, 237, 703
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseNI	ACTGG	1 cut(s)	784
BseRI	GAGGAG	2 cut(s)	584, 803
BseXI	GCAGC	2 cut(s)	170, 923
Bsh1236I	CGCG	1 cut(s)	566
Bsh1285I	CGRYCG	1 cut(s)	906
BshFI	GGCC	2 cut(s)	523, 920
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	253
BshVI	ATCGAT	1 cut(s)	393
BsiEI	CGRYCG	1 cut(s)	906
BsiSI	CCGG	3 cut(s)	241, 254, 266
BslFI	GGGAC	2 cut(s)	153, 851
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	2 cut(s)	153, 851
BsmI	GAATGC	1 cut(s)	716
BsnI	GGCC	2 cut(s)	523, 920
Bsp119I	TTCGAA	1 cut(s)	322
Bsp143I	GATC	3 cut(s)	394, 607, 903
BspACI	CCGC	6 cut(s)	50, 263, 548, 566, 966, 969
BspANI	GGCC	2 cut(s)	523, 920
BspDI	ATCGAT	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	615
BspT104I	TTCGAA	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	784
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	3 cut(s)	135, 767, 915
BssMI	GATC	3 cut(s)	394, 607, 903
BssNI	GRCGYC	1 cut(s)	700
BssSI	CACGAG	1 cut(s)	853
BssT1I	CCWWGG	3 cut(s)	135, 767, 915
Bst2BI	CACGAG	1 cut(s)	853
Bst4CI	ACNGT	5 cut(s)	209, 443, 501, 533, 622
Bst6I	CTCTTC	1 cut(s)	780
BstACI	GRCGYC	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	4 cut(s)	120, 236, 237, 703
BstFNI	CGCG	1 cut(s)	566
BstKTI	GATC	3 cut(s)	397, 610, 906
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	3 cut(s)	394, 607, 903
BstMCI	CGRYCG	1 cut(s)	906
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 284, 917, 965
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	170, 923
BstV2I	GAAGAC	1 cut(s)	855
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	523, 920
BsuTUI	ATCGAT	1 cut(s)	393
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	120, 236, 237, 703
BtsIMutI	CAGTG	1 cut(s)	777
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	799
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	4 cut(s)	194, 427, 673, 683
CspAI	ACCGGT	1 cut(s)	253
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	4 cut(s)	194, 427, 673, 683
DpnI	GATC	3 cut(s)	396, 609, 905
DpnII	GATC	3 cut(s)	394, 607, 903
EaeI	YGGCCR	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
EciI	GGCGGA	2 cut(s)	252, 955
Eco130I	CCWWGG	3 cut(s)	135, 767, 915
Eco47I	GGWCC	1 cut(s)	799
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoT14I	CCWWGG	3 cut(s)	135, 767, 915
EcoT22I	ATGCAT	1 cut(s)	716
ErhI	CCWWGG	3 cut(s)	135, 767, 915
FaeI	CATG	1 cut(s)	545
FaqI	GGGAC	2 cut(s)	153, 851
FatI	CATG	1 cut(s)	541
FauI	CCCGC	1 cut(s)	559
FauNDI	CATATG	1 cut(s)	795
Fnu4HI	GCNGC	4 cut(s)	159, 548, 912, 969
FokI	GGATG	4 cut(s)	127, 224, 243, 690
Fsp4HI	GCNGC	4 cut(s)	159, 548, 912, 969
FspBI	CTAG	3 cut(s)	92, 686, 951
GluI	GCNGC	4 cut(s)	159, 548, 912, 969
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	2 cut(s)	523, 920
HapII	CCGG	3 cut(s)	241, 254, 266
HgaI	GACGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	700
Hin1II	CATG	1 cut(s)	545
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	5 cut(s)	55, 774, 887, 898, 929
HpaII	CCGG	3 cut(s)	241, 254, 266
HphI	GGTGA	4 cut(s)	64, 163, 622, 835
Hpy188I	TCNGA	1 cut(s)	903
Hpy188III	TCNNGA	1 cut(s)	707
Hpy99I	CGWCG	1 cut(s)	673
HpyAV	CCTTC	2 cut(s)	675, 972
HpyCH4III	ACNGT	5 cut(s)	209, 443, 501, 533, 622
HpyCH4IV	ACGT	5 cut(s)	45, 81, 192, 300, 671
HpyCH4V	TGCA	2 cut(s)	714, 911
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 284, 917, 965
HpySE526I	ACGT	5 cut(s)	45, 81, 192, 300, 671
Hsp92I	GRCGYC	1 cut(s)	700
Hsp92II	CATG	1 cut(s)	545
Kzo9I	GATC	3 cut(s)	394, 607, 903
LmnI	GCTCC	3 cut(s)	189, 790, 964
LpnPI	CCDG	9 cut(s)	81, 201, 254, 264, 267, 279, 402, 765, 918
Lsp1109I	GCAGC	2 cut(s)	170, 923
MaeI	CTAG	3 cut(s)	92, 686, 951
MaeII	ACGT	5 cut(s)	45, 81, 192, 300, 671
MaeIII	GTNAC	4 cut(s)	82, 98, 488, 628
MalI	GATC	3 cut(s)	396, 609, 905
MboI	GATC	3 cut(s)	394, 607, 903
MboII	GAAGA	6 cut(s)	361, 602, 605, 797, 818, 860
MflI	RGATCY	1 cut(s)	607
MluCI	AATT	1 cut(s)	324
MlyI	GAGTC	1 cut(s)	896
Mph1103I	ATGCAT	1 cut(s)	716
MseI	TTAA	1 cut(s)	813
MslI	CAYNNNNRTG	2 cut(s)	377, 747
MspI	CCGG	3 cut(s)	241, 254, 266
MspR9I	CCNGG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	716
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	47, 284, 917, 965
NciI	CCSGG	1 cut(s)	242
NdeI	CATATG	1 cut(s)	795
NdeII	GATC	3 cut(s)	394, 607, 903
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	82, 628
NsiI	ATGCAT	1 cut(s)	716
NspV	TTCGAA	1 cut(s)	322
PctI	GAATGC	1 cut(s)	716
PfeI	GAWTC	4 cut(s)	55, 774, 898, 929
PfoI	TCCNGGA	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	160, 549, 913, 970
Ple19I	CGATCG	1 cut(s)	906
PleI	GAGTC	1 cut(s)	895
PpsI	GAGTC	1 cut(s)	895
PspEI	GGTNACC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	799
PsuI	RGATCY	1 cut(s)	607
PvuI	CGATCG	1 cut(s)	906
RsaI	GTAC	4 cut(s)	195, 428, 674, 684
RsaNI	GTAC	4 cut(s)	194, 427, 673, 683
RseI	CAYNNNNRTG	2 cut(s)	377, 747
SaqAI	TTAA	1 cut(s)	813
SatI	GCNGC	4 cut(s)	159, 548, 912, 969
Sau3AI	GATC	3 cut(s)	394, 607, 903
Sau96I	GGNCC	1 cut(s)	799
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	242
SfuI	TTCGAA	1 cut(s)	322
SinI	GGWCC	1 cut(s)	799
SmiMI	CAYNNNNRTG	2 cut(s)	377, 747
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	324
SsiI	CCGC	6 cut(s)	50, 263, 548, 566, 966, 969
SspMI	CTAG	3 cut(s)	92, 686, 951
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	3 cut(s)	135, 767, 915
TaaI	ACNGT	5 cut(s)	209, 443, 501, 533, 622
TaiI	ACGT	5 cut(s)	48, 84, 195, 303, 674
TaqI	TCGA	6 cut(s)	24, 322, 393, 668, 723, 890
TaqII	GACCGA	1 cut(s)	816
TasI	AATT	1 cut(s)	324
TauI	GCSGC	2 cut(s)	550, 971
TfiI	GAWTC	4 cut(s)	55, 774, 898, 929
Tru1I	TTAA	1 cut(s)	813
Tru9I	TTAA	1 cut(s)	813
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	2 cut(s)	82, 628
TseI	GCWGC	2 cut(s)	158, 911
Tsp45I	GTSAC	2 cut(s)	82, 628
TspDTI	ATGAA	5 cut(s)	32, 542, 633, 731, 861
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	784
VpaK11BI	GGWCC	1 cut(s)	799
XapI	RAATTY	1 cut(s)	324
XspI	CTAG	3 cut(s)	92, 686, 951
Zsp2I	ATGCAT	1 cut(s)	716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.