Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002421

Physical Location & Seq

Genomic Coordinates Forward (+)

4714349 .. 4715945

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGTTCCTCGTATCACCAAAGCTGCCAAAACCGTTTCAACCGTCAAGTCCGCCACTGCACGTAGCCGTGCCTATGTGACGTTCTTGGCCGGAAACGGTGACTATGTGAAAGGTGTGGTTGGGTTGGCCAAGGGTTTAAGGAAGGTTGAGAGCAAGTATCCACTAGTTGTGGCTATCTTGCCAGACGTCCCTGAAGAACACCGTCAGATCCTAGTTTCTCAGGGCTGTATAGTCCGAGAGATCGAGCCTGTCTACCCTCCTGAGAACCAGACCCAGTTTGCCATGGCCTACTACGTCATCAACTACTCCAAGCTTCGTATTTGGGAGTTTGTCGAGTATAGCAAGATGATCTACTTGGATGGAGATATCCAAGTGTTTGAGAACATCGACCATCTGTTCGACTATCCAGACAACTACTTATATGCTGTCAAGGATTGCTTCTGTGAGCCCAACTGGAGGCACAGTCCCCAGTTCAAGATTGGATACTGCCAGCAGTGCCCAGATAAGGTTCAGTGGGACAATAGCTTGGGTCCGAAGCCACCTCTATATTTTAACGCAGGCATGTTTGTCTATGAGCCTAGCTTGTCCACTTACCAGGAACTCCTCAGTGCCCTCAAGACTAGCACACCTACTTCATTTGCTGAGCAGGATTTCTTGAACGATTTCTTCAAGGATAAGTACAAGCCTATCCCTTCAGAATACAACCTTGTTTTGGCCATGCTTTGGCGCCACCCTGAAAACATTGAACTGGACAAAGTCAAGGTTGTCCACTACTGTGCTAATGGGTCCAAGCCATGGAGGTACAATGGAGAAGGGGAGAACATGCAGAGGGATGACATTAAGATGCTAGTGAAGAGGTGGTGGGATATCTACAACGATGAGTCATTGGATTACAACAACACCGTTGCTCCTCGGGCGGCTAGAAATAGAACTCGGCGAGTGAACCTACAGCCCTTTCAGATGGCTTTGTCTACGGGGGCTGGTGATCTCAACTATTTTACCGCCCCATCCGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005536 GO:0005975 GO:0005976 GO:0005977 GO:0005978 GO:0005996 GO:0006012 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0008466 GO:0009058 GO:0009059 GO:0009250 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0015980 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0030246 GO:0031668 GO:0033554 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0035250 GO:0035251 GO:0036094 GO:0042221 GO:0042631 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0046527 GO:0047216 GO:0048029 GO:0050896 GO:0051716 GO:0055114 GO:0070417 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071465 GO:0071496 GO:0071704 GO:0097305 GO:0104004 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

340

Amino Acids

39.12

Weight (kDa)

6.95

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	27 - 269	1.9e-44	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002421)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26250 AT5G30500 AT5G30500
fragaria_vesca	FvH4_6g07920 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930 FvH4_6g07930
malus_domestica	MD04G1190900.v1.1
prunus_persica	Prupe.6G309400_v2.0.a1 Prupe.6G309400_v2.0.a1
pyrus_communis	pycom04g16850
rosa_chinensis	RchiOBHm_Chr3g0457621 RchiOBHm_Chr3g0457631
rosa_laevigata	RLG00000025200 RLG00000025202 RLG00000025203
rosa_multiflora	Rmu_co8471647.1_g000001 Rmu_sc0005321.1_g000010 Rmu_sc0005321.1_g000011 Rmu_sc0007395.1_g000007 Rmu_sc0007395.1_g000008
rosa_roxburghii	Rroxscaffold_6G00421650 Rroxscaffold_6G00421660 Rroxscaffold_6G00421670
rosa_rugosa	Rorug03G0022200 Rorug03G0022300 Rorug03G0022400
rosa_samantha	Rh3AG082600 Rh3AG082700 Rh3AG083000 Rh3BG084900 Rh3BG085000 Rh3BG085500 Rh3CG085100 Rh3CG085200 Rh3CG085700 Rh3DG086400 Rh3DG086500
rosa_wichuraiana	Rw3G007100 Rw3G007110

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	726
AccB7I	CCANNNNNTGG	2 cut(s)	723, 795
AccI	GTMKAC	2 cut(s)	252, 971
AciI	CCGC	4 cut(s)	51, 917, 1002, 1011
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	3 cut(s)	87, 126, 714
AcuI	CTGAAG	2 cut(s)	213, 678
AcyI	GRCGYC	2 cut(s)	186, 727
AfaI	GTAC	2 cut(s)	680, 803
AfiI	CCNNNNNNNGG	5 cut(s)	456, 505, 712, 723, 795
AgsI	TTSAA	5 cut(s)	39, 475, 658, 670, 746
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	594
AleI	CACNNNNGTG	1 cut(s)	774
AluBI	AGCT	4 cut(s)	23, 313, 525, 582
AluI	AGCT	4 cut(s)	23, 313, 525, 582
AlwI	GGATC	1 cut(s)	202
Ama87I	CYCGRG	1 cut(s)	912
AoxI	GGCC	4 cut(s)	87, 126, 285, 714
ApeKI	GCWGC	2 cut(s)	23, 1013
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
Asp700I	GAANNNNTTC	1 cut(s)	662
AspLEI	GCGC	1 cut(s)	729
AspS9I	GGNCC	2 cut(s)	530, 786
AsuHPI	GGTGA	3 cut(s)	7, 110, 995
AvaI	CYCGRG	1 cut(s)	912
AvaII	GGWCC	2 cut(s)	530, 786
BaeGI	GKGCMC	2 cut(s)	500, 613
BalI	TGGCCA	2 cut(s)	128, 716
BanI	GGYRCC	1 cut(s)	726
BanII	GRGCYC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	10, 1000
BccI	CCATC	4 cut(s)	353, 399, 955, 1015
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	596
BciVI	GTATCC	2 cut(s)	168, 476
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	6 cut(s)	164, 212, 579, 621, 848, 921
BfmI	CTRYAG	1 cut(s)	947
BfoI	RGCGCY	1 cut(s)	730
BfuI	GTATCC	2 cut(s)	168, 476
BisI	GCNGC	3 cut(s)	24, 918, 1014
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	3 cut(s)	25, 919, 1015
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	2 cut(s)	530, 786
BmeT110I	CYCGRG	1 cut(s)	912
BmgT120I	GGNCC	2 cut(s)	530, 786
BmiI	GGNNCC	4 cut(s)	6, 531, 728, 787
BmrFI	CCNGG	1 cut(s)	596
BmrI	ACTGGG	2 cut(s)	268, 463
BmsI	GCATC	1 cut(s)	834
BmuI	ACTGGG	2 cut(s)	268, 463
BpmI	CTGGAG	1 cut(s)	475
Bpu1102I	GCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	62
BsaHI	GRCGYC	2 cut(s)	186, 727
BsaJI	CCNNGG	4 cut(s)	129, 282, 794, 911
BsaXI	ACNNNNNCTCC	4 cut(s)	448, 478, 892, 922
Bsc4I	CCNNNNNNNGG	5 cut(s)	456, 505, 712, 723, 795
Bse1I	ACTGG	4 cut(s)	274, 458, 469, 753
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	4 cut(s)	129, 282, 794, 911
BseGI	GGATG	3 cut(s)	364, 838, 1007
BseLI	CCNNNNNNNGG	5 cut(s)	456, 505, 712, 723, 795
BseMII	CTCAG	4 cut(s)	233, 252, 619, 633
BseNI	ACTGG	4 cut(s)	274, 458, 469, 753
BseRI	GAGGAG	2 cut(s)	593, 900
BseSI	GKGCMC	2 cut(s)	500, 613
BseXI	GCAGC	2 cut(s)	10, 1000
BsgI	GTGCAG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	89, 128, 287, 716
BshNI	GGYRCC	1 cut(s)	726
BsiHKCI	CYCGRG	1 cut(s)	912
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	3 cut(s)	173, 450, 530
BslI	CCNNNNNNNGG	5 cut(s)	456, 505, 712, 723, 795
BsmFI	GGGAC	3 cut(s)	173, 450, 530
BsnI	GGCC	4 cut(s)	89, 128, 287, 716
BsoBI	CYCGRG	1 cut(s)	912
Bsp1286I	GDGCHC	3 cut(s)	450, 500, 613
Bsp143I	GATC	4 cut(s)	207, 240, 348, 985
Bsp1720I	GCTNAGC	1 cut(s)	642
Bsp19I	CCATGG	2 cut(s)	282, 794
BspACI	CCGC	4 cut(s)	51, 917, 1002, 1011
BspANI	GGCC	4 cut(s)	89, 128, 287, 716
BspCNI	CTCAG	4 cut(s)	232, 253, 618, 634
BspLI	GGNNCC	4 cut(s)	6, 531, 728, 787
BspPI	GGATC	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	726
BsrI	ACTGG	4 cut(s)	274, 458, 469, 753
BssECI	CCNNGG	4 cut(s)	129, 282, 794, 911
BssMI	GATC	4 cut(s)	207, 240, 348, 985
BssNI	GRCGYC	2 cut(s)	186, 727
BssT1I	CCWWGG	3 cut(s)	129, 282, 794
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	7 cut(s)	34, 43, 98, 203, 464, 776, 904
Bst6I	CTCTTC	1 cut(s)	848
BstACI	GRCGYC	2 cut(s)	186, 727
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	491, 559
BstDEI	CTNAG	5 cut(s)	219, 261, 605, 642, 1017
BstDSI	CCRYGG	2 cut(s)	282, 794
BstF5I	GGATG	3 cut(s)	364, 838, 1007
BstH2I	RGCGCY	1 cut(s)	730
BstHHI	GCGC	1 cut(s)	729
BstKTI	GATC	4 cut(s)	210, 243, 351, 988
BstMBI	GATC	4 cut(s)	207, 240, 348, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	495, 914, 1010
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	2 cut(s)	565, 826
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	947
BstSLI	GKGCMC	2 cut(s)	500, 613
BstV1I	GCAGC	2 cut(s)	10, 1000
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuI	GTATCC	2 cut(s)	168, 476
BsuRI	GGCC	4 cut(s)	89, 128, 287, 716
BtgI	CCRYGG	2 cut(s)	282, 794
BtsCI	GGATG	3 cut(s)	364, 838, 1007
BtsI	GCAGTG	2 cut(s)	54, 500
BtsIMutI	CAGTG	4 cut(s)	54, 500, 518, 613
Cac8I	GCNNGC	2 cut(s)	491, 559
CfoI	GCGC	1 cut(s)	729
Cfr13I	GGNCC	2 cut(s)	530, 786
Csp6I	GTAC	2 cut(s)	679, 802
CviAII	CATG	5 cut(s)	283, 562, 718, 795, 823
CviQI	GTAC	2 cut(s)	679, 802
DdeI	CTNAG	5 cut(s)	219, 261, 605, 642, 1017
DinI	GGCGCC	1 cut(s)	728
DpnI	GATC	4 cut(s)	209, 242, 350, 987
DpnII	GATC	4 cut(s)	207, 240, 348, 985
EaeI	YGGCCR	3 cut(s)	87, 126, 714
Eam1104I	CTCTTC	1 cut(s)	848
EarI	CTCTTC	1 cut(s)	848
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	3 cut(s)	129, 282, 794
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	2 cut(s)	367, 868
Eco47I	GGWCC	2 cut(s)	530, 786
Eco57I	CTGAAG	2 cut(s)	213, 678
Eco88I	CYCGRG	1 cut(s)	912
EcoRII	CCWGG	1 cut(s)	594
EcoRV	GATATC	2 cut(s)	367, 868
EcoT14I	CCWWGG	3 cut(s)	129, 282, 794
EcoT38I	GRGCYC	1 cut(s)	450
EgeI	GGCGCC	1 cut(s)	728
EheI	GGCGCC	1 cut(s)	728
ErhI	CCWWGG	3 cut(s)	129, 282, 794
FaeI	CATG	5 cut(s)	286, 565, 721, 798, 826
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	3 cut(s)	173, 450, 530
FatI	CATG	5 cut(s)	282, 561, 717, 794, 822
FblI	GTMKAC	2 cut(s)	252, 971
Fnu4HI	GCNGC	3 cut(s)	24, 918, 1014
FokI	GGATG	3 cut(s)	371, 845, 994
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	3 cut(s)	24, 918, 1014
FspBI	CTAG	6 cut(s)	164, 212, 579, 621, 848, 921
GlaI	GCGC	1 cut(s)	728
GluI	GCNGC	3 cut(s)	24, 918, 1014
GsuI	CTGGAG	1 cut(s)	475
HaeII	RGCGCY	1 cut(s)	730
HaeIII	GGCC	4 cut(s)	89, 128, 287, 716
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	729
Hin1I	GRCGYC	2 cut(s)	186, 727
Hin1II	CATG	5 cut(s)	286, 565, 721, 798, 826
Hin6I	GCGC	1 cut(s)	727
HinP1I	GCGC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	881
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	3 cut(s)	7, 110, 995
Hpy166II	GTNNAC	5 cut(s)	253, 588, 769, 943, 972
Hpy188I	TCNGA	5 cut(s)	207, 236, 534, 697, 960
Hpy188III	TCNNGA	5 cut(s)	260, 407, 475, 616, 655
Hpy8I	GTNNAC	5 cut(s)	253, 588, 769, 943, 972
HpyAV	CCTTC	3 cut(s)	136, 702, 806
HpyCH4III	ACNGT	7 cut(s)	34, 43, 98, 203, 464, 776, 904
HpyCH4IV	ACGT	4 cut(s)	61, 80, 186, 294
HpyCH4V	TGCA	2 cut(s)	59, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	495, 914, 1010
HpyF3I	CTNAG	5 cut(s)	219, 261, 605, 642, 1017
HpySE526I	ACGT	4 cut(s)	61, 80, 186, 294
Hsp92I	GRCGYC	2 cut(s)	186, 727
Hsp92II	CATG	5 cut(s)	286, 565, 721, 798, 826
HspAI	GCGC	1 cut(s)	727
KasI	GGCGCC	1 cut(s)	726
Kzo9I	GATC	4 cut(s)	207, 240, 348, 985
LmnI	GCTCC	1 cut(s)	913
Lsp1109I	GCAGC	2 cut(s)	10, 1000
LweI	GCATC	1 cut(s)	834
MaeI	CTAG	6 cut(s)	164, 212, 579, 621, 848, 921
MaeII	ACGT	4 cut(s)	61, 80, 186, 294
MaeIII	GTNAC	2 cut(s)	76, 98
MalI	GATC	4 cut(s)	209, 242, 350, 987
MboI	GATC	4 cut(s)	207, 240, 348, 985
MboII	GAAGA	3 cut(s)	206, 658, 865
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	450, 500, 613
MlsI	TGGCCA	2 cut(s)	128, 716
MluNI	TGGCCA	2 cut(s)	128, 716
Mly113I	GGCGCC	1 cut(s)	727
MlyI	GAGTC	1 cut(s)	890
Mox20I	TGGCCA	2 cut(s)	128, 716
MroXI	GAANNNNTTC	1 cut(s)	662
MscI	TGGCCA	2 cut(s)	128, 716
MseI	TTAA	3 cut(s)	137, 552, 840
MslI	CAYNNNNRTG	2 cut(s)	774, 842
Msp20I	TGGCCA	2 cut(s)	128, 716
MspA1I	CMGCKG	1 cut(s)	1013
MspI	CCGG	1 cut(s)	90
MspR9I	CCNGG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	3 cut(s)	495, 914, 1010
NarI	GGCGCC	1 cut(s)	727
NcoI	CCATGG	2 cut(s)	282, 794
NdeII	GATC	4 cut(s)	207, 240, 348, 985
NlaIII	CATG	5 cut(s)	286, 565, 721, 798, 826
NlaIV	GGNNCC	4 cut(s)	6, 531, 728, 787
NmeAIII	GCCGAG	1 cut(s)	913
NmuCI	GTSAC	2 cut(s)	76, 98
NspI	RCATGY	2 cut(s)	565, 826
OliI	CACNNNNGTG	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	662
PflFI	GACNNNGTC	1 cut(s)	755
PflMI	CCANNNNNTGG	2 cut(s)	723, 795
PkrI	GCNGC	3 cut(s)	25, 919, 1015
PleI	GAGTC	1 cut(s)	889
PluTI	GGCGCC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	889
Ppu21I	YACGTR	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	4 cut(s)	6, 531, 728, 787
PspPI	GGNCC	2 cut(s)	530, 786
PsuI	RGATCY	1 cut(s)	207
PsyI	GACNNNGTC	1 cut(s)	755
RsaI	GTAC	2 cut(s)	680, 803
RsaNI	GTAC	2 cut(s)	679, 802
RseI	CAYNNNNRTG	2 cut(s)	774, 842
SaqAI	TTAA	3 cut(s)	137, 552, 840
SatI	GCNGC	3 cut(s)	24, 918, 1014
Sau3AI	GATC	4 cut(s)	207, 240, 348, 985
Sau96I	GGNCC	2 cut(s)	530, 786
SchI	GAGTC	1 cut(s)	890
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	3 cut(s)	450, 500, 613
SfaNI	GCATC	1 cut(s)	834
SfcI	CTRYAG	1 cut(s)	947
SfoI	GGCGCC	1 cut(s)	728
SinI	GGWCC	2 cut(s)	530, 786
SmiMI	CAYNNNNRTG	2 cut(s)	774, 842
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SpeI	ACTAGT	1 cut(s)	163
SsiI	CCGC	4 cut(s)	51, 917, 1002, 1011
SspDI	GGCGCC	1 cut(s)	726
SspMI	CTAG	6 cut(s)	164, 212, 579, 621, 848, 921
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	3 cut(s)	129, 282, 794
TaaI	ACNGT	7 cut(s)	34, 43, 98, 203, 464, 776, 904
TaiI	ACGT	4 cut(s)	64, 83, 189, 297
TaqI	TCGA	4 cut(s)	243, 333, 387, 399
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	920
Tru1I	TTAA	3 cut(s)	137, 552, 840
Tru9I	TTAA	3 cut(s)	137, 552, 840
TscAI	CASTG	4 cut(s)	61, 500, 518, 613
TseFI	GTSAC	2 cut(s)	76, 98
TseI	GCWGC	2 cut(s)	23, 1013
Tsp45I	GTSAC	2 cut(s)	76, 98
TspDTI	ATGAA	1 cut(s)	624
TspRI	CASTG	4 cut(s)	61, 500, 518, 613
Tth111I	GACNNNGTC	1 cut(s)	755
Van91I	CCANNNNNTGG	2 cut(s)	723, 795
VpaK11BI	GGWCC	2 cut(s)	530, 786
XceI	RCATGY	2 cut(s)	565, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	2 cut(s)	252, 971
XmnI	GAANNNNTTC	1 cut(s)	662
XspI	CTAG	6 cut(s)	164, 212, 579, 621, 848, 921
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.