Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015104

Physical Location & Seq

Genomic Coordinates Reverse (-)

13381714 .. 13383641

Gene Structure 1928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCAGCAGCGATGTCTTCTTCTTGTTGCGCTTCCTCGCTTCGTTTAATCCCATTCAAACGGACCTTGTTTTCTTCAATCCATTATCCGGCCAAAACCCTTCTTCTACGACCACTAAAACCGTCGGAAGTTCCTTCCTTTCGCCGGACGATCATCACTTTCCAGAAAATTTCAACCGGGATTGTTCCTCCACCATCGGCTTCATCATCTCCGTCGAGCTATGGAGACCTTCAACCAATCGAAGAGCTTCCACCGAAGCTACAAGAGATCGTCAAGCTTTTCCAATCGGTACAAGAGCCAAAGGCTAAATACGAGCAGCTTATGTTCTACGGGAAGAATCTGACACCTCTCGATTCTCAATTCAAGACGAGGGAGAATAAAGTAGAAGGATGTGTTTCTCAGGTTTGGGTTAGGGCTTTCTTTGATGAGGAACGTAATGTTGTGTATGAAGCTGATTCTGATTCGGTTCTCACTAAAGGGTTAGCTGCTCTATTAGTCAAGGGTTTATCTGGAAGACCTGTCCCTGAGATTTTGAGGATAACACCTGATTTCGCTGTTCTTCTCGGGTTGCAGCAGAGTCTGTCTCCTTCTAGAAACAATGGATTACTTAATATGCTTAAGCTGATGCAGAAAAAGGCTCTTCATTTGGAAGTCAAAGGTGAGGAAGATTCAAGTTCTGGAGAGAGTTCAGAATCCAGCTTTGTGTCTATTCCTGAGACTAAGGACGAAGCTAATGTTCCGGAGGTGGATTTGGAGTCTAAACCTGATCTAGTTGAGGATTTGGGAACAGAAAAGATTGATGATTCTGAGAGTGGGTCAAATGTTGTTGCTTTAGGGAGTAGAGGGATGAGGATAAGAGAGAAATTGGAGAAGGAGCTAGATCCTGTTGAGTTAGAAGTTGAAGATGTTTCTTACCAGCACGCAGGACATGCCGCTGTTAGAGGTAGTGCTGGTGATGATGGGGAAACACATTTCAACTTGCGAATCGTTTCGGATGCTTTCCAAGGTAAAAGCTTGGTCAAGAGACATAGGCTGATATATGACTTGTTGCAAGATGAGTTGAAGAGCGGGTTACATGCTCTCTCTATTGTGGCAAAGACTCCTGCTGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA SufE

Protein Analysis

371

Amino Acids

40.83

Weight (kDa)

5.46

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	92 - 211	1.7e-37	Fe-S metabolism associated domain
BolA	PF01722	289 - 370	1e-30	BolA-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26500
fragaria_vesca	FvH4_3g42140
malus_domestica	MD11G1039000.v1.1
prunus_persica	Prupe.6G029600_v2.0.a1 Prupe.6G029600_v2.0.a1
pyrus_communis	pycom03g02920
rosa_chinensis	RchiOBHm_Chr5g0075351
rosa_laevigata	RLG00000036552
rosa_multiflora	Rmu_sc0000770.1_g000033
rosa_roxburghii	Rroxscaffold_1G00006180
rosa_rugosa	Rorug05G0439000
rosa_samantha	Rh5AG495500 Rh5BG517200 Rh5CG540800 Rh5DG532300
rosa_wichuraiana	Rw5G045980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1068
AccIII	TCCGGA	1 cut(s)	739
AciI	CCGC	2 cut(s)	933, 1068
AclWI	GGATC	1 cut(s)	875
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	168
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	88, 144
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	9 cut(s)	58, 78, 174, 233, 364, 672, 902, 976, 1063
Alw26I	GTCTC	4 cut(s)	219, 588, 710, 1018
AlwI	GGATC	1 cut(s)	875
AlwNI	CAGNNNCTG	1 cut(s)	580
Ama87I	CYCGRG	1 cut(s)	563
Aor13HI	TCCGGA	1 cut(s)	739
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	5 cut(s)	5, 8, 316, 485, 571
ApoI	RAATTY	1 cut(s)	168
Asp700I	GAANNNNTTC	2 cut(s)	246, 988
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	63
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	671, 965
AvaI	CYCGRG	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	63
BbsI	GAAGAC	2 cut(s)	9, 520
BbvCI	CCTCAGC	1 cut(s)	1107
BbvI	GCAGC	5 cut(s)	17, 20, 328, 472, 583
BccI	CCATC	2 cut(s)	202, 953
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	4 cut(s)	219, 588, 710, 1018
BfaI	CTAG	3 cut(s)	591, 770, 878
BfrI	CTTAAG	1 cut(s)	617
BisI	GCNGC	6 cut(s)	6, 9, 317, 486, 572, 933
BlsI	GCNGC	6 cut(s)	7, 10, 318, 487, 573, 934
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	2 cut(s)	615, 985
BpiI	GAAGAC	2 cut(s)	9, 520
BplI	GAGNNNNNCTC	2 cut(s)	568, 600
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	1107
BpuMI	CCSGG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	1003
BsaWI	WCCGGW	1 cut(s)	739
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 144
BseAI	TCCGGA	1 cut(s)	739
BseDI	CCNNGG	1 cut(s)	1003
BseGI	GGATG	3 cut(s)	395, 852, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	88, 144
BseMII	CTCAG	5 cut(s)	413, 516, 705, 798, 1098
BseXI	GCAGC	5 cut(s)	17, 20, 328, 472, 583
BshFI	GGCC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	4 cut(s)	89, 145, 177, 740
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	88, 144
BsmAI	GTCTC	4 cut(s)	219, 588, 710, 1018
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	563
Bsp13I	TCCGGA	1 cut(s)	739
Bsp143I	GATC	4 cut(s)	150, 267, 766, 880
BspACI	CCGC	2 cut(s)	933, 1068
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	5 cut(s)	412, 517, 706, 799, 1099
BspEI	TCCGGA	1 cut(s)	739
BspPI	GGATC	1 cut(s)	875
BspQI	GCTCTTC	3 cut(s)	237, 645, 1058
BspTI	CTTAAG	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	219
BsrBI	CCGCTC	1 cut(s)	1068
BssECI	CCNNGG	1 cut(s)	1003
BssMI	GATC	4 cut(s)	150, 267, 766, 880
BssT1I	CCWWGG	1 cut(s)	1003
Bst4CI	ACNGT	1 cut(s)	123
Bst6I	CTCTTC	3 cut(s)	237, 645, 1058
BstAFI	CTTAAG	1 cut(s)	617
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstC8I	GCNNGC	1 cut(s)	921
BstDEI	CTNAG	6 cut(s)	399, 525, 714, 720, 807, 1107
BstF5I	GGATG	3 cut(s)	395, 852, 1000
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	153, 270, 769, 883
BstMAI	GTCTC	4 cut(s)	219, 588, 710, 1018
BstMBI	GATC	4 cut(s)	150, 267, 766, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	929
BstNSI	RCATGY	2 cut(s)	932, 1079
BstSCI	CCNGG	1 cut(s)	176
BstV1I	GCAGC	5 cut(s)	17, 20, 328, 472, 583
BstV2I	GAAGAC	2 cut(s)	9, 520
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuRI	GGCC	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	3 cut(s)	395, 852, 1000
Cac8I	GCNNGC	1 cut(s)	921
CaiI	CAGNNNCTG	1 cut(s)	580
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	2 cut(s)	929, 1076
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	6 cut(s)	399, 525, 714, 720, 807, 1107
DpnI	GATC	4 cut(s)	152, 269, 768, 882
DpnII	GATC	4 cut(s)	150, 267, 766, 880
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	3 cut(s)	237, 645, 1058
EarI	CTCTTC	3 cut(s)	237, 645, 1058
Eco130I	CCWWGG	1 cut(s)	1003
Eco31I	GGTCTC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	1003
ErhI	CCWWGG	1 cut(s)	1003
FaeI	CATG	2 cut(s)	932, 1079
FaiI	YATR	9 cut(s)	222, 323, 447, 614, 930, 1029, 1039, 1041, 1077
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	2 cut(s)	928, 1075
FauI	CCCGC	1 cut(s)	1061
Fnu4HI	GCNGC	6 cut(s)	6, 9, 317, 486, 572, 933
FokI	GGATG	3 cut(s)	402, 859, 1007
Fsp4HI	GCNGC	6 cut(s)	6, 9, 317, 486, 572, 933
FspBI	CTAG	3 cut(s)	591, 770, 878
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	6 cut(s)	6, 9, 317, 486, 572, 933
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	4 cut(s)	89, 145, 177, 740
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	932, 1079
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	2 cut(s)	275, 1012
HpaII	CCGG	4 cut(s)	89, 145, 177, 740
HphI	GGTGA	2 cut(s)	671, 965
Hpy188I	TCNGA	6 cut(s)	127, 342, 460, 691, 808, 994
Hpy188III	TCNNGA	9 cut(s)	163, 350, 364, 510, 591, 678, 713, 740, 1021
Hpy99I	CGWCG	2 cut(s)	127, 217
HpyAV	CCTTC	6 cut(s)	110, 144, 239, 380, 597, 865
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	3 cut(s)	571, 628, 1051
HpyF10VI	GCNNNNNNNGC	1 cut(s)	929
HpyF3I	CTNAG	6 cut(s)	399, 525, 714, 720, 807, 1107
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	2 cut(s)	932, 1079
HspAI	GCGC	1 cut(s)	30
Kpn2I	TCCGGA	1 cut(s)	739
Kzo9I	GATC	4 cut(s)	150, 267, 766, 880
LguI	GCTCTTC	3 cut(s)	237, 645, 1058
LmnI	GCTCC	1 cut(s)	874
Lsp1109I	GCAGC	5 cut(s)	17, 20, 328, 472, 583
LweI	GCATC	2 cut(s)	615, 985
MaeI	CTAG	3 cut(s)	591, 770, 878
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	1071
MalI	GATC	4 cut(s)	152, 269, 768, 882
MbiI	CCGCTC	1 cut(s)	1068
MboI	GATC	4 cut(s)	150, 267, 766, 880
MflI	RGATCY	1 cut(s)	880
MluCI	AATT	3 cut(s)	168, 359, 863
MlyI	GAGTC	3 cut(s)	586, 764, 1093
MmeI	TCCRAC	1 cut(s)	105
MroI	TCCGGA	1 cut(s)	739
MroXI	GAANNNNTTC	2 cut(s)	246, 988
MseI	TTAA	3 cut(s)	47, 609, 618
MspA1I	CMGCKG	1 cut(s)	935
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	4 cut(s)	89, 145, 177, 740
MspR9I	CCNGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	929
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	4 cut(s)	150, 267, 766, 880
NlaIII	CATG	2 cut(s)	932, 1079
NspI	RCATGY	2 cut(s)	932, 1079
PciSI	GCTCTTC	3 cut(s)	237, 645, 1058
PdmI	GAANNNNTTC	2 cut(s)	246, 988
PfeI	GAWTC	8 cut(s)	337, 353, 455, 461, 668, 692, 803, 984
PkrI	GCNGC	6 cut(s)	7, 10, 318, 487, 573, 934
PleI	GAGTC	3 cut(s)	585, 763, 1093
PpsI	GAGTC	3 cut(s)	585, 763, 1093
PspPI	GGNCC	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	880
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SapI	GCTCTTC	3 cut(s)	237, 645, 1058
SaqAI	TTAA	3 cut(s)	47, 609, 618
SatI	GCNGC	6 cut(s)	6, 9, 317, 486, 572, 933
Sau3AI	GATC	4 cut(s)	150, 267, 766, 880
Sau96I	GGNCC	1 cut(s)	63
SchI	GAGTC	3 cut(s)	586, 764, 1093
ScrFI	CCNGG	1 cut(s)	178
SfaNI	GCATC	2 cut(s)	615, 985
SinI	GGWCC	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
Sse9I	AATT	3 cut(s)	168, 359, 863
SsiI	CCGC	2 cut(s)	933, 1068
SspMI	CTAG	3 cut(s)	591, 770, 878
StyD4I	CCNGG	1 cut(s)	176
StyI	CCWWGG	1 cut(s)	1003
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	3 cut(s)	215, 240, 351
TasI	AATT	3 cut(s)	168, 359, 863
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	8 cut(s)	337, 353, 455, 461, 668, 692, 803, 984
Tru1I	TTAA	3 cut(s)	47, 609, 618
Tru9I	TTAA	3 cut(s)	47, 609, 618
TseI	GCWGC	5 cut(s)	5, 8, 316, 485, 571
TspDTI	ATGAA	3 cut(s)	192, 462, 632
TspGWI	ACGGA	2 cut(s)	76, 201
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	168
XbaI	TCTAGA	1 cut(s)	590
XceI	RCATGY	2 cut(s)	932, 1079
XmnI	GAANNNNTTC	2 cut(s)	246, 988
XspI	CTAG	3 cut(s)	591, 770, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.