Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015104

Physical Location & Seq

Genomic Coordinates Forward (+)

2298254 .. 2299696

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G029600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTCGTCGTCTTCTTCAATCTCATCGTCGTTTAGATTATTCACAGCCAAACTCCCAAGCTCCATTATAAACCCAAAAGCCCTCTTAGCCTCATCGCCAAAACACCCAAACCTCTCTTTCTTCAAAAGGCCCATCACTTTCGAAAGAATACCAACCATATCCTCATCGAAATTACCATCTGCATCAGCTTCAGCATCAGCTGCGGCATCAGCTGCATCTTCGGCTTCAAGCTCGATGTCTCTGCAATCCATTGAAGAGCTCCCACCAAAGCTTCAAGAGATAGTTAAGCTCTTCCAGTCCGTACAAGAATCGAAGGCCAAGTACGAGCAGCTCTTGTTCTACGGCAAGAACCTCAAGCCTTTAGATGACCAATTCAAAACGAAGCAAAACAAGGTCGAGGGTTGTGTCTCTCAGGTCTGGGTCAGGGCCTACCTTGACTCGGACAAGAACGTATATTTCGAGGCCGATTCCGACTCGGTACTCACCAAGGGACTCGCTGCTCTGCTCGTCAATGGCCTCTCTGGTCGCCCAGTCGATGAGGTTTTGCGGGTCTCGCCTGATTTCGCGGTCCTTCTGGGGCTTCAGCAGAGCTTAACGCCTTCGAGGAATAATGGGTTTTTGAATATGTTGAAGTTGATGCAGAAAAAGGCTTATGAATTGCTCGTGGAAGAAGAAAATGGAGTAAGTAGCTCAAATTTGGGGGCAAAAAGTGAAAATAGTTTTAAAAAAGTAGAATTTGGATTGAATTCTGAGGTGGGTGGTGAAAATAATTCGACTTTGGGTTCGAAAGTTGATGGTGGTATCGAGGATTTGGGTGTTGGATTAGGTTCTAAAGAAGATATTAAGCAATTGGAACTAGTGCCAAGTGTTACGAATGAAGATGAGTCAAATTCGGGTGATTTGGGGAGCAGAGGGAAGAGAATTAAGGAGAGATTGGAAAGAGGGCTTAGTCCTATTGAATTGGAAGTAGAAGATATCTCTTATCAGCATGCCGGACACGCCGGTGTTAGAGGAAGTGATGGTGAGACACATTTCAATGTGAAAGTTGTGTCTAAAGAGTTTGAAGGGAAGAGTTTAGTTAAGAGGCATAGGCTCATTTATGGTTTGTTGCAAGAAGAGTTACAGAGTGGACTACATGCATTGTCGATAGTGGCCAAAACACCATCTGAATTGAGTGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA SufE

Protein Analysis

395

Amino Acids

42.61

Weight (kDa)

6.64

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26500
fragaria_vesca	FvH4_3g42140
malus_domestica	MD11G1039000.v1.1
prunus_persica	Prupe.6G029600_v2.0.a1 Prupe.6G029600_v2.0.a1
pyrus_communis	pycom03g02920
rosa_chinensis	RchiOBHm_Chr5g0075351
rosa_laevigata	RLG00000036552
rosa_multiflora	Rmu_sc0000770.1_g000033
rosa_roxburghii	Rroxscaffold_1G00006180
rosa_rugosa	Rorug05G0439000
rosa_samantha	Rh5AG495500 Rh5BG517200 Rh5CG540800 Rh5DG532300
rosa_wichuraiana	Rw5G045980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AccII	CGCG	1 cut(s)	566
AciI	CCGC	3 cut(s)	203, 547, 566
AcoI	YGGCCR	1 cut(s)	1152
AcsI	RAATTY	4 cut(s)	694, 734, 745, 889
AcuI	CTGAAG	2 cut(s)	174, 566
AfaI	GTAC	3 cut(s)	303, 323, 480
AfiI	CCNNNNNNNGG	1 cut(s)	439
AhlI	ACTAGT	1 cut(s)	856
AleI	CACNNNNGTG	1 cut(s)	1002
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	4 cut(s)	243, 412, 556, 1019
AoxI	GGCC	6 cut(s)	128, 315, 426, 462, 514, 1152
ApeKI	GCWGC	4 cut(s)	200, 212, 328, 497
ApoI	RAATTY	4 cut(s)	694, 734, 745, 889
ArsI	GACNNNNNNTTYG	2 cut(s)	766, 798
AspS9I	GGNCC	3 cut(s)	129, 426, 568
AsuHPI	GGTGA	4 cut(s)	475, 773, 908, 1034
AsuII	TTCGAA	2 cut(s)	141, 785
AvaII	GGWCC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	1154
BanII	GRGCYC	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BauI	CACGAG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	4 cut(s)	187, 199, 340, 484
BccI	CCATC	5 cut(s)	140, 184, 788, 1013, 1171
BceAI	ACGGC	1 cut(s)	358
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BcoDI	GTCTC	4 cut(s)	243, 412, 556, 1019
BcuI	ACTAGT	1 cut(s)	856
BfaI	CTAG	1 cut(s)	857
BisI	GCNGC	5 cut(s)	201, 204, 213, 329, 498
BlsI	GCNGC	5 cut(s)	202, 205, 214, 330, 499
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	3 cut(s)	129, 426, 568
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	5 cut(s)	191, 203, 215, 224, 627
BmuI	ACTGGG	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	3
Bpu14I	TTCGAA	2 cut(s)	141, 785
BpuEI	CTTGAG	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse118I	RCCGGY	1 cut(s)	1001
Bse1I	ACTGG	2 cut(s)	295, 530
BseDI	CCNNGG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	425, 741
BseNI	ACTGG	2 cut(s)	295, 530
BseXI	GCAGC	4 cut(s)	187, 199, 340, 484
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	6 cut(s)	130, 317, 428, 464, 516, 1154
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	993, 1002
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	4 cut(s)	243, 412, 556, 1019
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	6 cut(s)	130, 317, 428, 464, 516, 1154
Bso31I	GGTCTC	1 cut(s)	556
Bsp119I	TTCGAA	2 cut(s)	141, 785
Bsp1286I	GDGCHC	1 cut(s)	261
BspACI	CCGC	3 cut(s)	203, 547, 566
BspANI	GGCC	6 cut(s)	130, 317, 428, 464, 516, 1154
BspCNI	CTCAG	2 cut(s)	424, 742
BspFNI	CGCG	1 cut(s)	566
BspQI	GCTCTTC	2 cut(s)	249, 296
BspT104I	TTCGAA	2 cut(s)	141, 785
BspTNI	GGTCTC	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	1001
BsrI	ACTGG	2 cut(s)	295, 530
BssAI	RCCGGY	1 cut(s)	1001
BssECI	CCNNGG	1 cut(s)	486
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	662
Bst6I	CTCTTC	5 cut(s)	249, 296, 911, 1064, 1110
BstAPI	GCANNNNNTGC	2 cut(s)	200, 212
BstBI	TTCGAA	2 cut(s)	141, 785
BstC8I	GCNNGC	1 cut(s)	990
BstDEI	CTNAG	4 cut(s)	85, 411, 750, 947
BstFNI	CGCG	1 cut(s)	566
BstMAI	GTCTC	4 cut(s)	243, 412, 556, 1019
BstMWI	GCNNNNNNNGC	7 cut(s)	86, 200, 209, 212, 221, 553, 998
BstNSI	RCATGY	2 cut(s)	992, 1139
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	4 cut(s)	187, 199, 340, 484
BstV2I	GAAGAC	1 cut(s)	3
BsuRI	GGCC	6 cut(s)	130, 317, 428, 464, 516, 1154
BtgZI	GCGATG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	990
Cfr10I	RCCGGY	1 cut(s)	1001
Cfr13I	GGNCC	3 cut(s)	129, 426, 568
Csp6I	GTAC	3 cut(s)	302, 322, 479
CviAII	CATG	2 cut(s)	989, 1136
CviQI	GTAC	3 cut(s)	302, 322, 479
DdeI	CTNAG	4 cut(s)	85, 411, 750, 947
DraI	TTTAAA	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	1152
Eam1104I	CTCTTC	5 cut(s)	249, 296, 911, 1064, 1110
EarI	CTCTTC	5 cut(s)	249, 296, 911, 1064, 1110
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	556
Eco32I	GATATC	1 cut(s)	976
Eco47I	GGWCC	1 cut(s)	568
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	174, 566
EcoICRI	GAGCTC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRI	GAATTC	1 cut(s)	745
EcoRV	GATATC	1 cut(s)	976
EcoT14I	CCWWGG	1 cut(s)	486
EcoT22I	ATGCAT	1 cut(s)	1141
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	2 cut(s)	992, 1139
FaiI	YATR	9 cut(s)	68, 158, 454, 626, 654, 990, 1089, 1101, 1137
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	2 cut(s)	988, 1135
FauI	CCCGC	1 cut(s)	540
Fnu4HI	GCNGC	5 cut(s)	201, 204, 213, 329, 498
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	201, 204, 213, 329, 498
FspBI	CTAG	1 cut(s)	857
GluI	GCNGC	5 cut(s)	201, 204, 213, 329, 498
HaeIII	GGCC	6 cut(s)	130, 317, 428, 464, 516, 1154
HapII	CCGG	2 cut(s)	993, 1002
Hin1II	CATG	2 cut(s)	992, 1139
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	6 cut(s)	308, 437, 467, 473, 492, 884
HpaII	CCGG	2 cut(s)	993, 1002
HphI	GGTGA	4 cut(s)	475, 773, 908, 1034
Hpy166II	GTNNAC	1 cut(s)	1130
Hpy188I	TCNGA	4 cut(s)	442, 472, 751, 1168
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	1130
Hpy99I	CGWCG	2 cut(s)	10, 31
HpyAV	CCTTC	4 cut(s)	307, 581, 609, 1058
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	6 cut(s)	182, 215, 244, 640, 1111, 1139
HpyF10VI	GCNNNNNNNGC	7 cut(s)	86, 200, 209, 212, 221, 553, 998
HpyF3I	CTNAG	4 cut(s)	85, 411, 750, 947
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	992, 1139
LguI	GCTCTTC	2 cut(s)	249, 296
LmnI	GCTCC	3 cut(s)	65, 264, 906
Lsp1109I	GCAGC	4 cut(s)	187, 199, 340, 484
LweI	GCATC	5 cut(s)	191, 203, 215, 224, 627
MaeI	CTAG	1 cut(s)	857
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	2 cut(s)	868, 1119
MfeI	CAATTG	1 cut(s)	848
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	1154
MluNI	TGGCCA	1 cut(s)	1154
MlyI	GAGTC	4 cut(s)	431, 467, 486, 893
MmeI	TCCRAC	2 cut(s)	495, 799
Mox20I	TGGCCA	1 cut(s)	1154
Mph1103I	ATGCAT	1 cut(s)	1141
MscI	TGGCCA	1 cut(s)	1154
MseI	TTAA	6 cut(s)	285, 593, 723, 843, 924, 1080
MslI	CAYNNNNRTG	2 cut(s)	1002, 1035
Msp20I	TGGCCA	1 cut(s)	1154
MspA1I	CMGCKG	2 cut(s)	200, 212
MspI	CCGG	2 cut(s)	993, 1002
MunI	CAATTG	1 cut(s)	848
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	7 cut(s)	86, 200, 209, 212, 221, 553, 998
NlaIII	CATG	2 cut(s)	992, 1139
NsiI	ATGCAT	1 cut(s)	1141
NspI	RCATGY	2 cut(s)	992, 1139
NspV	TTCGAA	2 cut(s)	141, 785
OliI	CACNNNNGTG	1 cut(s)	1002
PaeI	GCATGC	1 cut(s)	992
PciSI	GCTCTTC	2 cut(s)	249, 296
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	308, 467
PkrI	GCNGC	5 cut(s)	202, 205, 214, 330, 499
PleI	GAGTC	4 cut(s)	431, 467, 486, 892
PpsI	GAGTC	4 cut(s)	431, 467, 486, 892
PsiI	TTATAA	1 cut(s)	68
Psp124BI	GAGCTC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	129, 426, 568
PvuII	CAGCTG	2 cut(s)	200, 212
RsaI	GTAC	3 cut(s)	303, 323, 480
RsaNI	GTAC	3 cut(s)	302, 322, 479
RseI	CAYNNNNRTG	2 cut(s)	1002, 1035
SacI	GAGCTC	1 cut(s)	261
SapI	GCTCTTC	2 cut(s)	249, 296
SaqAI	TTAA	6 cut(s)	285, 593, 723, 843, 924, 1080
SatI	GCNGC	5 cut(s)	201, 204, 213, 329, 498
Sau96I	GGNCC	3 cut(s)	129, 426, 568
SchI	GAGTC	4 cut(s)	431, 467, 486, 893
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	5 cut(s)	191, 203, 215, 224, 627
SfuI	TTCGAA	2 cut(s)	141, 785
SgrAI	CRCCGGYG	1 cut(s)	1001
SinI	GGWCC	1 cut(s)	568
SmiMI	CAYNNNNRTG	2 cut(s)	1002, 1035
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	856
SphI	GCATGC	1 cut(s)	992
SsiI	CCGC	3 cut(s)	203, 547, 566
SspMI	CTAG	1 cut(s)	857
SstI	GAGCTC	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	486
TaiI	ACGT	1 cut(s)	453
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	2 cut(s)	308, 467
Tru1I	TTAA	6 cut(s)	285, 593, 723, 843, 924, 1080
Tru9I	TTAA	6 cut(s)	285, 593, 723, 843, 924, 1080
TseI	GCWGC	4 cut(s)	200, 212, 328, 497
TspDTI	ATGAA	2 cut(s)	669, 891
TspGWI	ACGGA	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	568
XapI	RAATTY	4 cut(s)	694, 734, 745, 889
XceI	RCATGY	2 cut(s)	992, 1139
XspI	CTAG	1 cut(s)	857
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.