Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015104

Physical Location & Seq

Genomic Coordinates Reverse (-)

35201355 .. 35202569

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGTCGACGTCTTCTACTATCTCCTCCTCATTTCGATTATTCACAACCAAACTCCCCAACTCATCTTTCACCCCTAAAACCCTCTCCTTCTCCCCAAAACACCCAAACTTCTCTTCCTTCCGTCGACCCATCACTTTCCAAAGAATCCCCACCATATCCTCCTCCTCACAACCACCCTTGACTCCTCTCCAACCCATCGAAGACCTCCCTCCGAAGCTTCTAGAAATAGTCAAGCTCTTCCAGTCCGTTCCTCTCCCACGTGCCAGGTACGAGGAGCTCCTCTTCTACGGCAAGAACCTCGTACCCCTCGAAGACAAGTACAAGACCAAAGACAACAAGGTTGAAGGTTGTGTCTCCCAGGTTTGGGTCCGAGCCTACCTCGACTCCGACAAGAACGTGTTTTTCGAGGCCGATTCCGACGCCCAAATCGCCAAAGGTCTCGCCGCTCTGCTTGTTAAAGGGCTTTCGGGTCAACCCGTGGAAGAGGTTTTGAGGGTCCGACCCGATTTCGCGGTCCACCTTGGGCTTCAGCAGAGCTTGTCCCCTGGTAGGAATAATGGGTTTTTGAATATGTTGAAGTTGATGCAGAAAAAGGCCAAGGATTTGCTTAATGAATCGAGTTCTGTGGATTTGGGATCAAAGTCTGAAGTGGGTAGTGGAAAGGTTTCGAATTCGGGTTCGAAAGTCAATGGTGGATTGAGCTTTGATGAAAATGCTGAGCAATTGAGTGAAAAGAATTCGACTTTGGGTTCAAAAATCAATGGTGGATTGAGCTTTGATGAAAATGCTGAGCAATTGAGCAAAAAGAATTCGAATTTGGGTTCGAATATTGATGATGGGAATGTTGAACAAAGCTCGGAAGGAAATGTGGAGGAAATGGAGGTGGTGGGGAGTGTTTCGAATGAAGAGGAGTTGAATTCAGGTGGTTTGGGGGGTCGAGGGAAGAGAATTAGGGAGGCATTGGAGAGAGAGCTTAGTCCTGTGGAATTGGAAGTAGAGGATATATCTTACCAGCATGCCGGGCACGCCGCAGTTAGAGGAAGTGGTGACGGGGAGACGCATTTCAATGTGAGAGTTGTGTCTGAGGCGTTTGAAGGGAAGAGTTTGATCAAGAGGCATAGGCTGATTTACAACTTGTTGCAAGAGGAGTTGCAGAGTGGACTACATGCATTGTCTATCGAGGCGAAGACGCCAGCTGAAGTGAGTAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA SufE

Protein Analysis

405

Amino Acids

44.09

Weight (kDa)

5.8

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	78 - 197	1.4e-38	Fe-S metabolism associated domain
BolA	PF01722	321 - 400	4.1e-31	BolA-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26500
fragaria_vesca	FvH4_3g42140
malus_domestica	MD11G1039000.v1.1
prunus_persica	Prupe.6G029600_v2.0.a1 Prupe.6G029600_v2.0.a1
pyrus_communis	pycom03g02920
rosa_chinensis	RchiOBHm_Chr5g0075351
rosa_laevigata	RLG00000036552
rosa_multiflora	Rmu_sc0000770.1_g000033
rosa_roxburghii	Rroxscaffold_1G00006180
rosa_rugosa	Rorug05G0439000
rosa_samantha	Rh5AG495500 Rh5BG517200 Rh5CG540800 Rh5DG532300
rosa_wichuraiana	Rw5G045980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	11
AccBSI	CCGCTC	1 cut(s)	446
AccI	GTMKAC	2 cut(s)	5, 124
AccII	CGCG	1 cut(s)	512
AciI	CCGC	3 cut(s)	444, 512, 1029
AclWI	GGATC	1 cut(s)	643
AcsI	RAATTY	5 cut(s)	670, 736, 808, 814, 916
AcuI	CTGAAG	2 cut(s)	512, 666
AcvI	CACGTG	1 cut(s)	260
AcyI	GRCGYC	3 cut(s)	8, 420, 1190
AfaI	GTAC	3 cut(s)	269, 303, 320
AfiI	CCNNNNNNNGG	3 cut(s)	363, 364, 549
AflIII	ACRYGT	1 cut(s)	396
AgsI	TTSAA	8 cut(s)	344, 568, 577, 753, 848, 916, 1066, 1094
AjnI	CCWGG	3 cut(s)	263, 357, 544
AjuI	GAANNNNNNNTTGG	8 cut(s)	50, 82, 97, 129, 728, 760, 800, 832
AluBI	AGCT	9 cut(s)	217, 235, 277, 537, 702, 774, 855, 973, 1196
AluI	AGCT	9 cut(s)	217, 235, 277, 537, 702, 774, 855, 973, 1196
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	3 cut(s)	358, 443, 1049
AlwI	GGATC	1 cut(s)	643
AoxI	GGCC	2 cut(s)	408, 594
ApoI	RAATTY	5 cut(s)	670, 736, 808, 814, 916
Asp700I	GAANNNNTTC	1 cut(s)	664
AspS9I	GGNCC	3 cut(s)	367, 496, 514
AsuC2I	CCSGG	1 cut(s)	1021
AsuHPI	GGTGA	2 cut(s)	61, 1058
AsuII	TTCGAA	5 cut(s)	668, 680, 812, 824, 899
AvaII	GGWCC	3 cut(s)	367, 496, 514
BaeGI	GKGCMC	1 cut(s)	1026
BanII	GRGCYC	1 cut(s)	279
BbrPI	CACGTG	1 cut(s)	260
BbsI	GAAGAC	4 cut(s)	3, 207, 318, 1193
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	3 cut(s)	137, 203, 830
BceAI	ACGGC	1 cut(s)	304
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	3 cut(s)	265, 359, 546
BclI	TGATCA	1 cut(s)	1107
BcnI	CCSGG	1 cut(s)	1021
BcoDI	GTCTC	3 cut(s)	358, 443, 1049
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	444, 1029
BlpI	GCTNAGC	2 cut(s)	717, 789
BlsI	GCNGC	2 cut(s)	445, 1030
Bme1390I	CCNGG	4 cut(s)	265, 359, 546, 1021
Bme18I	GGWCC	3 cut(s)	367, 496, 514
BmgT120I	GGNCC	3 cut(s)	367, 496, 514
BmiI	GGNNCC	2 cut(s)	368, 497
BmrFI	CCNGG	4 cut(s)	265, 359, 546, 1021
BmsI	GCATC	1 cut(s)	573
BpiI	GAAGAC	4 cut(s)	3, 207, 318, 1193
BplI	GAGNNNNNCTC	2 cut(s)	363, 395
Bpu1102I	GCTNAGC	2 cut(s)	717, 789
Bpu14I	TTCGAA	5 cut(s)	668, 680, 812, 824, 899
BpuMI	CCSGG	1 cut(s)	1021
BsaAI	YACGTR	1 cut(s)	260
BsaHI	GRCGYC	3 cut(s)	8, 420, 1190
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	5 cut(s)	357, 477, 520, 544, 597
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	3 cut(s)	363, 364, 549
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	3 cut(s)	265, 359, 546
BseDI	CCNNGG	5 cut(s)	357, 477, 520, 544, 597
BseLI	CCNNNNNNNGG	3 cut(s)	363, 364, 549
BseMII	CTCAG	3 cut(s)	708, 780, 1074
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	9 cut(s)	13, 16, 151, 154, 174, 269, 287, 923, 1160
BseSI	GKGCMC	1 cut(s)	1026
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	2 cut(s)	410, 596
BsiHKAI	GWGCWC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	1020
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	3 cut(s)	363, 364, 549
BsmAI	GTCTC	3 cut(s)	358, 443, 1049
BsmBI	CGTCTC	1 cut(s)	1049
BsmFI	GGGAC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	410, 596
Bso31I	GGTCTC	1 cut(s)	443
Bsp119I	TTCGAA	5 cut(s)	668, 680, 812, 824, 899
Bsp1286I	GDGCHC	2 cut(s)	279, 1026
Bsp143I	GATC	2 cut(s)	635, 1107
Bsp1720I	GCTNAGC	2 cut(s)	717, 789
BspACI	CCGC	3 cut(s)	444, 512, 1029
BspANI	GGCC	2 cut(s)	410, 596
BspCNI	CTCAG	3 cut(s)	709, 781, 1075
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	2 cut(s)	368, 497
BspPI	GGATC	1 cut(s)	643
BspQI	GCTCTTC	1 cut(s)	242
BspT104I	TTCGAA	5 cut(s)	668, 680, 812, 824, 899
BspTNI	GGTCTC	1 cut(s)	443
BsrBI	CCGCTC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	5 cut(s)	357, 477, 520, 544, 597
BssMI	GATC	2 cut(s)	635, 1107
BssNI	GRCGYC	3 cut(s)	8, 420, 1190
BssT1I	CCWWGG	2 cut(s)	520, 597
Bst2UI	CCWGG	3 cut(s)	265, 359, 546
Bst6I	CTCTTC	7 cut(s)	118, 242, 287, 477, 900, 938, 1094
BstACI	GRCGYC	3 cut(s)	8, 420, 1190
BstBAI	YACGTR	1 cut(s)	260
BstBI	TTCGAA	5 cut(s)	668, 680, 812, 824, 899
BstC8I	GCNNGC	3 cut(s)	1017, 1026, 1194
BstDEI	CTNAG	4 cut(s)	717, 789, 974, 1083
BstDSI	CCRYGG	1 cut(s)	477
BstFNI	CGCG	1 cut(s)	512
BstKTI	GATC	2 cut(s)	638, 1110
BstMAI	GTCTC	3 cut(s)	358, 443, 1049
BstMBI	GATC	2 cut(s)	635, 1107
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 1021, 1025
BstNI	CCWGG	3 cut(s)	265, 359, 546
BstNSI	RCATGY	2 cut(s)	1019, 1169
BstSCI	CCNGG	4 cut(s)	263, 357, 544, 1019
BstSLI	GKGCMC	1 cut(s)	1026
BstUI	CGCG	1 cut(s)	512
BstV2I	GAAGAC	4 cut(s)	3, 207, 318, 1193
BsuRI	GGCC	2 cut(s)	410, 596
BtgI	CCRYGG	1 cut(s)	477
Cac8I	GCNNGC	3 cut(s)	1017, 1026, 1194
Cfr13I	GGNCC	3 cut(s)	367, 496, 514
CseI	GACGC	3 cut(s)	428, 1066, 1198
Csp6I	GTAC	3 cut(s)	268, 302, 319
CviAII	CATG	2 cut(s)	1016, 1166
CviQI	GTAC	3 cut(s)	268, 302, 319
DdeI	CTNAG	4 cut(s)	717, 789, 974, 1083
DpnI	GATC	2 cut(s)	637, 1109
DpnII	GATC	2 cut(s)	635, 1107
Eam1104I	CTCTTC	7 cut(s)	118, 242, 287, 477, 900, 938, 1094
EarI	CTCTTC	7 cut(s)	118, 242, 287, 477, 900, 938, 1094
Ecl136II	GAGCTC	1 cut(s)	277
Eco130I	CCWWGG	2 cut(s)	520, 597
Eco24I	GRGCYC	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	3 cut(s)	367, 496, 514
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	2 cut(s)	512, 666
Eco72I	CACGTG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	277
EcoRI	GAATTC	4 cut(s)	670, 736, 808, 916
EcoRII	CCWGG	3 cut(s)	263, 357, 544
EcoT14I	CCWWGG	2 cut(s)	520, 597
EcoT22I	ATGCAT	1 cut(s)	1171
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	2 cut(s)	520, 597
Esp3I	CGTCTC	1 cut(s)	1049
FaeI	CATG	2 cut(s)	1019, 1169
FaiI	YATR	6 cut(s)	155, 572, 1004, 1017, 1119, 1167
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	2 cut(s)	1015, 1165
FbaI	TGATCA	1 cut(s)	1107
FblI	GTMKAC	2 cut(s)	5, 124
Fnu4HI	GCNGC	2 cut(s)	444, 1029
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	444, 1029
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	444, 1029
HaeIII	GGCC	2 cut(s)	410, 596
HapII	CCGG	1 cut(s)	1020
HgaI	GACGC	3 cut(s)	428, 1066, 1198
Hin1I	GRCGYC	3 cut(s)	8, 420, 1190
Hin1II	CATG	2 cut(s)	1019, 1169
HincII	GTYRAC	3 cut(s)	6, 125, 473
HindII	GTYRAC	3 cut(s)	6, 125, 473
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	5 cut(s)	144, 181, 383, 413, 614
HpaII	CCGG	1 cut(s)	1020
HphI	GGTGA	2 cut(s)	61, 1058
Hpy166II	GTNNAC	5 cut(s)	6, 125, 473, 517, 1160
Hpy188I	TCNGA	8 cut(s)	213, 371, 388, 418, 500, 646, 859, 1084
Hpy188III	TCNNGA	2 cut(s)	221, 1111
Hpy8I	GTNNAC	5 cut(s)	6, 125, 473, 517, 1160
Hpy99I	CGWCG	3 cut(s)	10, 126, 422
HpyAV	CCTTC	5 cut(s)	97, 127, 338, 854, 1088
HpyCH4IV	ACGT	3 cut(s)	8, 259, 396
HpyCH4V	TGCA	4 cut(s)	586, 1141, 1153, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 1021, 1025
HpyF3I	CTNAG	4 cut(s)	717, 789, 974, 1083
HpySE526I	ACGT	3 cut(s)	8, 259, 396
Hsp92I	GRCGYC	3 cut(s)	8, 420, 1190
Hsp92II	CATG	2 cut(s)	1019, 1169
Ksp22I	TGATCA	1 cut(s)	1107
Kzo9I	GATC	2 cut(s)	635, 1107
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	274, 282
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	3 cut(s)	8, 259, 396
MaeIII	GTNAC	1 cut(s)	1046
MalI	GATC	2 cut(s)	637, 1109
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	2 cut(s)	635, 1107
MfeI	CAATTG	2 cut(s)	722, 794
MhlI	GDGCHC	2 cut(s)	279, 1026
MluCI	AATT	9 cut(s)	670, 722, 736, 794, 808, 814, 916, 948, 986
MlyI	GAGTC	2 cut(s)	175, 377
MmeI	TCCRAC	4 cut(s)	214, 411, 441, 523
Mph1103I	ATGCAT	1 cut(s)	1171
MroXI	GAANNNNTTC	1 cut(s)	664
MseI	TTAA	2 cut(s)	456, 609
MslI	CAYNNNNRTG	1 cut(s)	1065
MspA1I	CMGCKG	1 cut(s)	1196
MspI	CCGG	1 cut(s)	1020
MspR9I	CCNGG	4 cut(s)	265, 359, 546, 1021
MunI	CAATTG	2 cut(s)	722, 794
MvaI	CCWGG	3 cut(s)	265, 359, 546
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	428, 1021, 1025
NciI	CCSGG	1 cut(s)	1021
NdeII	GATC	2 cut(s)	635, 1107
NlaIII	CATG	2 cut(s)	1019, 1169
NlaIV	GGNNCC	2 cut(s)	368, 497
NmuCI	GTSAC	1 cut(s)	1046
NsiI	ATGCAT	1 cut(s)	1171
NspI	RCATGY	2 cut(s)	1019, 1169
NspV	TTCGAA	5 cut(s)	668, 680, 812, 824, 899
PaeI	GCATGC	1 cut(s)	1019
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	2 cut(s)	306, 402
PdmI	GAANNNNTTC	1 cut(s)	664
PfeI	GAWTC	3 cut(s)	144, 413, 614
PkrI	GCNGC	2 cut(s)	445, 1030
PleI	GAGTC	2 cut(s)	175, 377
PmaCI	CACGTG	1 cut(s)	260
PmlI	CACGTG	1 cut(s)	260
PpsI	GAGTC	2 cut(s)	175, 377
Ppu21I	YACGTR	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	279
Psp6I	CCWGG	3 cut(s)	263, 357, 544
PspCI	CACGTG	1 cut(s)	260
PspGI	CCWGG	3 cut(s)	263, 357, 544
PspN4I	GGNNCC	2 cut(s)	368, 497
PspPI	GGNCC	3 cut(s)	367, 496, 514
PvuII	CAGCTG	1 cut(s)	1196
RsaI	GTAC	3 cut(s)	269, 303, 320
RsaNI	GTAC	3 cut(s)	268, 302, 319
RseI	CAYNNNNRTG	1 cut(s)	1065
SacI	GAGCTC	1 cut(s)	279
SalI	GTCGAC	2 cut(s)	4, 123
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	456, 609
SatI	GCNGC	2 cut(s)	444, 1029
Sau3AI	GATC	2 cut(s)	635, 1107
Sau96I	GGNCC	3 cut(s)	367, 496, 514
SchI	GAGTC	2 cut(s)	175, 377
ScrFI	CCNGG	4 cut(s)	265, 359, 546, 1021
SduI	GDGCHC	2 cut(s)	279, 1026
SfaNI	GCATC	1 cut(s)	573
SfuI	TTCGAA	5 cut(s)	668, 680, 812, 824, 899
SinI	GGWCC	3 cut(s)	367, 496, 514
SmiMI	CAYNNNNRTG	1 cut(s)	1065
SphI	GCATGC	1 cut(s)	1019
Sse9I	AATT	9 cut(s)	670, 722, 736, 794, 808, 814, 916, 948, 986
SsiI	CCGC	3 cut(s)	444, 512, 1029
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	1 cut(s)	221
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	4 cut(s)	263, 357, 544, 1019
StyI	CCWWGG	2 cut(s)	520, 597
TaiI	ACGT	3 cut(s)	11, 262, 399
TasI	AATT	9 cut(s)	670, 722, 736, 794, 808, 814, 916, 948, 986
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	446, 1031
TfiI	GAWTC	3 cut(s)	144, 413, 614
Tru1I	TTAA	2 cut(s)	456, 609
Tru9I	TTAA	2 cut(s)	456, 609
TseFI	GTSAC	1 cut(s)	1046
Tsp45I	GTSAC	1 cut(s)	1046
TspDTI	ATGAA	4 cut(s)	627, 723, 795, 918
TspGWI	ACGGA	2 cut(s)	110, 235
VpaK11BI	GGWCC	3 cut(s)	367, 496, 514
XapI	RAATTY	5 cut(s)	670, 736, 808, 814, 916
XbaI	TCTAGA	1 cut(s)	220
XceI	RCATGY	2 cut(s)	1019, 1169
XmiI	GTMKAC	2 cut(s)	5, 124
XmnI	GAANNNNTTC	1 cut(s)	664
XspI	CTAG	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.