RchiOBHm_Chr5g0075351

SufE-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015104
Physical Location & Seq
Reverse (-)
81169696 .. 81171773
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35008

Sequence Viewer

Length: 1167 bp
ATGTCGTCGTCTTCTTCTATCTCATCCTCGTTTCGGTTATTCACTACCAAAATCCCCCACTCTTCTTCTCTAAACCCCAAAACCCTCTCCGCCTTCCCAAAACACCCGAACTTCTCTTCCTTCCGTCGACCCATTTCTTTCGAAAGAATCCCCACCATATCCTCATCCCGATCCCCATCTGCCTTAGCACCATCAGCTTCAATGCCCCTGCAACCCATCGAAGAACTCCCCCCGAAGCTTCGAGAAATTGTCAAGCTCTTCCAGTCCGTACCGGTTCCAAAAGCCAAGTACGAGGAGCTCCTGTACTACGGCAAGAAGCTCAAACCCCTCGAAGATAAGTACAAGACAAAAGAGAACAAGGTCGAAGGTTGTGTCTCGCAGGTTTGGGTGCGAGCCTACCTCGATTCCGACAAGAACGTGTTCTTTGAGGCCGATTCCGACGCGCTTATATCGAAAGGTCTCGCTGCTCTGCTCGTTAAAGGGCTCTCGGGTGAACCCGTGGAGGAAATTTTGAGGGTCCGACCCGATTTCGCGCTCCATCTTGGGCTTCAGCAGAGCTTGTCACCTGGTAGGAATAATGGGTTTTTGAATATGTTGAACTTGATGCAGAAAAAGGCTGAGGATTTGGTTAGTGGCTCGGATTCTGTGGATTTGGGATTGAATTCTCAAGTGGGTGGTATTGAGGGTTCTAGTGTTGGATTGAGCTCTAATGAAAATGCTGAGCAATTGAGTAGCACTAGTGAAAAGATTTCGATTTTGGGTTCGAGAATCAATGGTGGCATTGAGAGTGTGAATGTTGAATCGAGGTCAGAAGGAAATGTGAAGGAATTGGAGGTGGTAGGGAGTGTTTCGAATGAAGAGGAGTCGAATTCGGGTGATTTGGGAGGTCGAGGGAAGAGAATTAAGGAAGCATTGGAGAGAGAGCTTAGTCCTGTGGAATTGGAAGTAGAGGATATCTCTTACCAGCACGTCGGGCATGCCGGAGTTAGAGGAAGTGGTGATGGGGAGACGCATTTCAATGTGAGAGTTGTGACTAAGGCGTTTGAAGGGAAGAGTATGATCAAGAGGCATAGGCTCATCTACGGCTTGTTGCAAGAGGAGTTGCAGAGTGGACTACATGCATTGTCTATCGAGGCGAAGACGCCAGCTGAAGTGAGTACAAAGTGA

Protein Analysis

388

Amino Acids

42.24

Weight (kDa)

6.3

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufE PF02657 85 - 204 4.9e-39 Fe-S metabolism associated domain
BolA PF01722 305 - 384 8.3e-29 BolA-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015104)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26500
fragaria_vesca FvH4_3g42140
malus_domestica MD11G1039000.v1.1
prunus_persica Prupe.6G029600_v2.0.a1 Prupe.6G029600_v2.0.a1
pyrus_communis pycom03g02920
rosa_chinensis RchiOBHm_Chr5g0075351
rosa_laevigata RLG00000036552
rosa_multiflora Rmu_sc0000770.1_g000033
rosa_roxburghii Rroxscaffold_1G00006180
rosa_rugosa Rorug05G0439000
rosa_samantha Rh5AG495500 Rh5BG517200 Rh5CG540800 Rh5DG532300
rosa_wichuraiana Rw5G045980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 127
AccII CGCG 2 cut(s) 443, 533
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 165
AcsI RAATTY 3 cut(s) 507, 661, 868
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 1142
AfaI GTAC 5 cut(s) 270, 290, 305, 341, 1159
AfiI CCNNNNNNNGG 1 cut(s) 33
AflIII ACRYGT 1 cut(s) 417
AgeI ACCGGT 1 cut(s) 271
AgsI TTSAA 7 cut(s) 201, 589, 598, 661, 800, 1018, 1046
AhlI ACTAGT 1 cut(s) 737
AjiI CACGTC 1 cut(s) 970
AjnI CCWGG 1 cut(s) 565
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
AluBI AGCT 9 cut(s) 197, 238, 256, 298, 319, 558, 705, 925, 1148
AluI AGCT 9 cut(s) 197, 238, 256, 298, 319, 558, 705, 925, 1148
Alw21I GWGCWC 2 cut(s) 300, 707
Alw26I GTCTC 3 cut(s) 379, 464, 1001
AlwI GGATC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 487
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 3 cut(s) 507, 661, 868
ArsI GACNNNNNNTTYG 2 cut(s) 357, 389
AsiGI ACCGGT 1 cut(s) 271
Asp700I GAANNNNTTC 1 cut(s) 419
AspLEI GCGC 2 cut(s) 445, 535
AspS9I GGNCC 1 cut(s) 517
AsuHPI GGTGA 4 cut(s) 503, 555, 887, 1010
AsuII TTCGAA 2 cut(s) 141, 851
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 1 cut(s) 517
BanII GRGCYC 3 cut(s) 300, 486, 707
BbsI GAAGAC 2 cut(s) 3, 1145
Bbv12I GWGCWC 2 cut(s) 300, 707
BbvCI CCTCAGC 1 cut(s) 618
BbvI GCAGC 1 cut(s) 451
BccI CCATC 5 cut(s) 184, 199, 224, 546, 995
BceAI ACGGC 2 cut(s) 325, 1099
BciT130I CCWGG 1 cut(s) 567
BclI TGATCA 1 cut(s) 1059
BcoDI GTCTC 3 cut(s) 379, 464, 1001
BcuI ACTAGT 1 cut(s) 737
BfaI CTAG 2 cut(s) 690, 738
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 1 cut(s) 465
BlpI GCTNAGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 567
Bme18I GGWCC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 487
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 2 cut(s) 276, 518
BmrFI CCNGG 1 cut(s) 567
BmsI GCATC 1 cut(s) 594
BpiI GAAGAC 2 cut(s) 3, 1145
BplI GAGNNNNNCTC 4 cut(s) 384, 416, 941, 973
Bpu10I CCTNAGC 2 cut(s) 184, 618
Bpu1102I GCTNAGC 1 cut(s) 720
Bpu14I TTCGAA 2 cut(s) 141, 851
BpuEI CTTGAG 1 cut(s) 651
BsaBI GATNNNNATC 1 cut(s) 175
BsaHI GRCGYC 1 cut(s) 1142
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 175
BseBI CCWGG 1 cut(s) 567
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 2 cut(s) 23, 164
BseJI GATNNNNATC 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 2 cut(s) 609, 711
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 3 cut(s) 308, 875, 1112
BseXI GCAGC 1 cut(s) 451
Bsh1236I CGCG 2 cut(s) 443, 533
BshFI GGCC 1 cut(s) 431
BshTI ACCGGT 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 300, 707
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 2 cut(s) 272, 981
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 3 cut(s) 379, 464, 1001
BsmBI CGTCTC 1 cut(s) 1001
BsnI GGCC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 1 cut(s) 487
Bsp119I TTCGAA 2 cut(s) 141, 851
Bsp1286I GDGCHC 3 cut(s) 300, 486, 707
Bsp143I GATC 2 cut(s) 170, 1059
Bsp1720I GCTNAGC 1 cut(s) 720
BspACI CCGC 1 cut(s) 90
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 2 cut(s) 610, 712
BspFNI CGCG 2 cut(s) 443, 533
BspLI GGNNCC 2 cut(s) 276, 518
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 263
BspT104I TTCGAA 2 cut(s) 141, 851
BspTNI GGTCTC 1 cut(s) 464
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 2 cut(s) 170, 1059
BssNI GRCGYC 1 cut(s) 1142
Bst2UI CCWGG 1 cut(s) 567
Bst6I CTCTTC 6 cut(s) 67, 121, 263, 852, 890, 1046
BstACI GRCGYC 1 cut(s) 1142
BstBI TTCGAA 2 cut(s) 141, 851
BstC8I GCNNGC 3 cut(s) 393, 978, 1146
BstDEI CTNAG 5 cut(s) 184, 618, 720, 926, 1035
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 23, 164
BstFNI CGCG 2 cut(s) 443, 533
BstHHI GCGC 2 cut(s) 445, 535
BstKTI GATC 2 cut(s) 173, 1062
BstMAI GTCTC 3 cut(s) 379, 464, 1001
BstMBI GATC 2 cut(s) 170, 1059
BstMWI GCNNNNNNNGC 2 cut(s) 194, 973
BstNI CCWGG 1 cut(s) 567
BstNSI RCATGY 2 cut(s) 980, 1121
BstSCI CCNGG 1 cut(s) 565
BstUI CGCG 2 cut(s) 443, 533
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 2 cut(s) 3, 1145
BsuRI GGCC 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 498
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 2 cut(s) 23, 164
BveI ACCTGC 1 cut(s) 370
Cac8I GCNNGC 3 cut(s) 393, 978, 1146
CfoI GCGC 2 cut(s) 445, 535
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 517
CseI GACGC 3 cut(s) 449, 1018, 1150
CsiI ACCWGGT 1 cut(s) 565
Csp6I GTAC 5 cut(s) 269, 289, 304, 340, 1158
CspAI ACCGGT 1 cut(s) 271
CviAII CATG 2 cut(s) 977, 1118
CviQI GTAC 5 cut(s) 269, 289, 304, 340, 1158
DdeI CTNAG 5 cut(s) 184, 618, 720, 926, 1035
DpnI GATC 2 cut(s) 172, 1061
DpnII GATC 2 cut(s) 170, 1059
Eam1104I CTCTTC 6 cut(s) 67, 121, 263, 852, 890, 1046
EarI CTCTTC 6 cut(s) 67, 121, 263, 852, 890, 1046
EciI GGCGGA 1 cut(s) 79
Ecl136II GAGCTC 2 cut(s) 298, 705
Eco24I GRGCYC 3 cut(s) 300, 486, 707
Eco31I GGTCTC 1 cut(s) 464
Eco32I GATATC 1 cut(s) 955
Eco47I GGWCC 1 cut(s) 517
Eco53kI GAGCTC 2 cut(s) 298, 705
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 487
EcoICRI GAGCTC 2 cut(s) 298, 705
EcoRI GAATTC 2 cut(s) 661, 868
EcoRII CCWGG 1 cut(s) 565
EcoRV GATATC 1 cut(s) 955
EcoT22I ATGCAT 1 cut(s) 1123
EcoT38I GRGCYC 3 cut(s) 300, 486, 707
Esp3I CGTCTC 1 cut(s) 1001
FaeI CATG 2 cut(s) 980, 1121
FaiI YATR 7 cut(s) 158, 449, 593, 978, 1058, 1071, 1119
FatI CATG 2 cut(s) 976, 1117
FbaI TGATCA 1 cut(s) 1059
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 465
FokI GGATG 2 cut(s) 10, 151
FriOI GRGCYC 3 cut(s) 300, 486, 707
Fsp4HI GCNGC 1 cut(s) 465
FspBI CTAG 2 cut(s) 690, 738
GlaI GCGC 2 cut(s) 444, 534
GluI GCNGC 1 cut(s) 465
HaeIII GGCC 1 cut(s) 431
HapII CCGG 2 cut(s) 272, 981
HgaI GACGC 3 cut(s) 449, 1018, 1150
HhaI GCGC 2 cut(s) 445, 535
Hin1I GRCGYC 1 cut(s) 1142
Hin1II CATG 2 cut(s) 980, 1121
Hin6I GCGC 2 cut(s) 443, 533
HinP1I GCGC 2 cut(s) 443, 533
HincII GTYRAC 1 cut(s) 128
HindII GTYRAC 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 7 cut(s) 147, 404, 434, 641, 768, 800, 863
HpaII CCGG 2 cut(s) 272, 981
HphI GGTGA 4 cut(s) 503, 555, 887, 1010
Hpy166II GTNNAC 3 cut(s) 128, 494, 1112
Hpy188I TCNGA 5 cut(s) 409, 439, 521, 640, 811
Hpy188III TCNNGA 4 cut(s) 168, 242, 765, 1063
Hpy8I GTNNAC 3 cut(s) 128, 494, 1112
Hpy99I CGWCG 4 cut(s) 10, 129, 443, 974
HpyAV CCTTC 6 cut(s) 103, 130, 359, 806, 817, 1040
HpyCH4IV ACGT 2 cut(s) 417, 969
HpyCH4V TGCA 5 cut(s) 211, 607, 1093, 1105, 1121
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 973
HpyF3I CTNAG 5 cut(s) 184, 618, 720, 926, 1035
HpySE526I ACGT 2 cut(s) 417, 969
Hsp92I GRCGYC 1 cut(s) 1142
Hsp92II CATG 2 cut(s) 980, 1121
HspAI GCGC 2 cut(s) 443, 533
Ksp22I TGATCA 1 cut(s) 1059
Kzo9I GATC 2 cut(s) 170, 1059
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 3 cut(s) 295, 303, 540
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 594
MabI ACCWGGT 1 cut(s) 565
MaeI CTAG 2 cut(s) 690, 738
MaeII ACGT 2 cut(s) 417, 969
MaeIII GTNAC 2 cut(s) 561, 1030
MalI GATC 2 cut(s) 172, 1061
MboI GATC 2 cut(s) 170, 1059
MfeI CAATTG 1 cut(s) 725
MhlI GDGCHC 3 cut(s) 300, 486, 707
MluCI AATT 8 cut(s) 246, 507, 661, 725, 827, 868, 900, 938
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 4 cut(s) 432, 462, 544, 676
Mph1103I ATGCAT 1 cut(s) 1123
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 2 cut(s) 477, 903
MslI CAYNNNNRTG 1 cut(s) 1017
MspA1I CMGCKG 1 cut(s) 1148
MspI CCGG 2 cut(s) 272, 981
MspR9I CCNGG 1 cut(s) 567
MunI CAATTG 1 cut(s) 725
MvaI CCWGG 1 cut(s) 567
MvnI CGCG 2 cut(s) 443, 533
MwoI GCNNNNNNNGC 2 cut(s) 194, 973
NdeII GATC 2 cut(s) 170, 1059
NlaIII CATG 2 cut(s) 980, 1121
NlaIV GGNNCC 2 cut(s) 276, 518
NmuCI GTSAC 2 cut(s) 561, 1030
NsiI ATGCAT 1 cut(s) 1123
NspI RCATGY 2 cut(s) 980, 1121
NspV TTCGAA 2 cut(s) 141, 851
PaeI GCATGC 1 cut(s) 980
PciSI GCTCTTC 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 6 cut(s) 147, 404, 434, 641, 768, 800
PinAI ACCGGT 1 cut(s) 271
PkrI GCNGC 1 cut(s) 466
PleI GAGTC 1 cut(s) 871
PpsI GAGTC 1 cut(s) 871
Psp124BI GAGCTC 2 cut(s) 300, 707
Psp6I CCWGG 1 cut(s) 565
PspGI CCWGG 1 cut(s) 565
PspN4I GGNNCC 2 cut(s) 276, 518
PspPI GGNCC 1 cut(s) 517
PsrI GAACNNNNNNTAC 2 cut(s) 670, 702
PvuII CAGCTG 1 cut(s) 1148
RsaI GTAC 5 cut(s) 270, 290, 305, 341, 1159
RsaNI GTAC 5 cut(s) 269, 289, 304, 340, 1158
RseI CAYNNNNRTG 1 cut(s) 1017
SacI GAGCTC 2 cut(s) 300, 707
SalI GTCGAC 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 477, 903
SatI GCNGC 1 cut(s) 465
Sau3AI GATC 2 cut(s) 170, 1059
Sau96I GGNCC 1 cut(s) 517
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 1 cut(s) 567
SduI GDGCHC 3 cut(s) 300, 486, 707
SexAI ACCWGGT 1 cut(s) 565
SfaNI GCATC 1 cut(s) 594
SfuI TTCGAA 2 cut(s) 141, 851
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 1 cut(s) 666
SmoI CTYRAG 1 cut(s) 666
SpeI ACTAGT 1 cut(s) 737
SphI GCATGC 1 cut(s) 980
Sse9I AATT 8 cut(s) 246, 507, 661, 725, 827, 868, 900, 938
SsiI CCGC 1 cut(s) 90
SspMI CTAG 2 cut(s) 690, 738
SstI GAGCTC 2 cut(s) 300, 707
StyD4I CCNGG 1 cut(s) 565
TaiI ACGT 2 cut(s) 420, 972
TasI AATT 8 cut(s) 246, 507, 661, 725, 827, 868, 900, 938
TatI WGTACW 3 cut(s) 303, 339, 1157
TfiI GAWTC 6 cut(s) 147, 404, 434, 641, 768, 800
Tru1I TTAA 2 cut(s) 477, 903
Tru9I TTAA 2 cut(s) 477, 903
TseFI GTSAC 2 cut(s) 561, 1030
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 2 cut(s) 561, 1030
TspDTI ATGAA 2 cut(s) 726, 870
TspGWI ACGGA 2 cut(s) 113, 256
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 3 cut(s) 507, 661, 868
XceI RCATGY 2 cut(s) 980, 1121
XmiI GTMKAC 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 2 cut(s) 690, 738
Zsp2I ATGCAT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.