Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015104

Physical Location & Seq

Genomic Coordinates Forward (+)

3322068 .. 3324163

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1039000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGTCGTCGTCTTCTTCAATCTCATCGTCGTTTCGATTATTCACCACCAAAATCCCTACCTCAATTCTCAACCCTAAAACCCCAAAACCCCCATCTCTGTCTTTTCCCCAAAGGCACATCACTTTCCAAAGAATCCCCACCATATCCGCCTCCTCCCCTCCGCCGCCGTCCGCATCCGCTTCGAGCTCCACGTCCCTACAGCCGGTCGAGGACCTCCCTCCGAAGCTCCAGGAAATCGTCAAGCTTTTCCAGTCCGTAGAGGTCCCCAAGGCCAAGTACGAGCAGCTTCTGTTCTACGGCAAGAATTTGAAGCCGTTGGATGATCGATTCAAGACGAAGCAGAACAAAGTGGAGGGATGCGTCTCTCAGGTGTGGGTCAGGGCGTATCTTGATTCGGACAAGAATGTGTTTTTCGAGGCCGATTCCGACTCGGTCCTCACCAAGGGGCTCGCTGCTTTGCTAGTTAGCGGGTTATCGGGCCGCCCGGTGGATGAGGTTTTGCGGGTTTCGCCCGATTTCGCGGTGCTTCTGGGTCTGCAGCAGAGCCTGACGCCGTCGAGGAATAATGGGTTTTTGAATATGTTGAGGTTGATGCAGAGGAAGGCGAAGGAGTTGCTTGTGGAGGAAGAAAATGGAGGGGAGAGTGAGCGTTTCGCAGCGAAAATTGAAGATAGTGTCAAAAGTTTGGAGCTTGGAGTGGATTCTGAAGTGGGTGGGGAAAAGAATTCGAATTCGAATTCGGGTTTGAGAGTTGATGGTGGGATTGAGGGTGAGGATATTGGATTGAGTTCTGGAGAAAATGTTAAGCAATTGGACCTGGTAGCGAGTGAAATGAGCGAAAATGTGGCAGATTCTGGTGACTTGGGAAGCAGAGGGAAGAGAATTCAGGAGAAATTGATGGGAGAGTTAAGTCCTGTGGAATTGGAAGTGGAAGACATTTCTTATCAACATGCCGGGCATGCCGGGGTTAGAGGAGGTGGTGATGGGGAGACGCATTTCAATGTGAGAGTTGTGTCTAAGAAGTTTGAAGGGAAGAGTTTGGTTAAGAGGCATAGGCTTATATATGGTTTGTTGAAAGAAGAATTGCAAAGTGGACTACATGCATTGTCGATTGTGGCGAAAACACCGTCTGAAGTGAGTGGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA SufE

Protein Analysis

383

Amino Acids

41.38

Weight (kDa)

5.99

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	81 - 200	6.9e-38	Fe-S metabolism associated domain
BolA	PF01722	301 - 378	6.7e-30	BolA-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26500
fragaria_vesca	FvH4_3g42140
malus_domestica	MD11G1039000.v1.1
prunus_persica	Prupe.6G029600_v2.0.a1 Prupe.6G029600_v2.0.a1
pyrus_communis	pycom03g02920
rosa_chinensis	RchiOBHm_Chr5g0075351
rosa_laevigata	RLG00000036552
rosa_multiflora	Rmu_sc0000770.1_g000033
rosa_roxburghii	Rroxscaffold_1G00006180
rosa_rugosa	Rorug05G0439000
rosa_samantha	Rh5AG495500 Rh5BG517200 Rh5CG540800 Rh5DG532300
rosa_wichuraiana	Rw5G045980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	521
AciI	CCGC	9 cut(s)	147, 161, 164, 171, 177, 468, 481, 502, 521
AcsI	RAATTY	5 cut(s)	304, 724, 730, 736, 882
AcuI	CTGAAG	1 cut(s)	726
AcyI	GRCGYC	1 cut(s)	551
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	3 cut(s)	202, 442, 487
AgsI	TTSAA	8 cut(s)	18, 310, 331, 577, 668, 1000, 1028, 1075
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	228, 816
AluBI	AGCT	5 cut(s)	186, 226, 244, 286, 691
AluI	AGCT	5 cut(s)	186, 226, 244, 286, 691
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	367, 983
AlwNI	CAGNNNCTG	3 cut(s)	289, 547, 854
AoxI	GGCC	3 cut(s)	270, 417, 478
ApeKI	GCWGC	4 cut(s)	283, 452, 538, 656
ApoI	RAATTY	5 cut(s)	304, 724, 730, 736, 882
ArsI	GACNNNNNNTTYG	2 cut(s)	1112, 1144
AspS9I	GGNCC	5 cut(s)	211, 262, 433, 478, 814
AsuC2I	CCSGG	3 cut(s)	485, 955, 964
AsuHPI	GGTGA	5 cut(s)	34, 430, 782, 869, 992
AsuII	TTCGAA	2 cut(s)	728, 734
AvaII	GGWCC	4 cut(s)	211, 262, 433, 814
BanII	GRGCYC	2 cut(s)	188, 450
BbsI	GAAGAC	2 cut(s)	3, 939
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	4 cut(s)	295, 439, 550, 668
BccI	CCATC	4 cut(s)	100, 749, 892, 977
BceAI	ACGGC	4 cut(s)	151, 298, 313, 538
BcgI	CGANNNNNNTGC	4 cut(s)	162, 196, 595, 629
BciT130I	CCWGG	2 cut(s)	230, 818
BcnI	CCSGG	3 cut(s)	485, 955, 964
BcoDI	GTCTC	2 cut(s)	367, 983
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	2 cut(s)	197, 536
BisI	GCNGC	6 cut(s)	164, 284, 453, 481, 539, 657
BlsI	GCNGC	6 cut(s)	165, 285, 454, 482, 540, 658
Bme1390I	CCNGG	5 cut(s)	230, 485, 818, 955, 964
Bme18I	GGWCC	4 cut(s)	211, 262, 433, 814
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	5 cut(s)	211, 262, 433, 478, 814
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	5 cut(s)	230, 485, 818, 955, 964
BmsI	GCATC	3 cut(s)	182, 347, 582
BpiI	GAAGAC	2 cut(s)	3, 939
BpmI	CTGGAG	2 cut(s)	212, 813
Bpu14I	TTCGAA	2 cut(s)	728, 734
BpuMI	CCSGG	3 cut(s)	485, 955, 964
Bsa29I	ATCGAT	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	267, 441, 963
BsaXI	ACNNNNNCTCC	2 cut(s)	786, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 442, 487
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	2 cut(s)	230, 818
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	3 cut(s)	267, 441, 963
BseGI	GGATG	4 cut(s)	173, 325, 362, 496
BseLI	CCNNNNNNNGG	3 cut(s)	202, 442, 487
BseMII	CTCAG	1 cut(s)	380
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	2 cut(s)	142, 987
BseXI	GCAGC	4 cut(s)	295, 439, 550, 668
Bsh1236I	CGCG	1 cut(s)	521
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	272, 419, 480
BshVI	ATCGAT	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	203, 485, 954, 963
BslFI	GGGAC	2 cut(s)	178, 248
BslI	CCNNNNNNNGG	3 cut(s)	202, 442, 487
BsmAI	GTCTC	2 cut(s)	367, 983
BsmBI	CGTCTC	2 cut(s)	367, 983
BsmFI	GGGAC	2 cut(s)	178, 248
BsnI	GGCC	3 cut(s)	272, 419, 480
Bsp119I	TTCGAA	2 cut(s)	728, 734
Bsp1286I	GDGCHC	2 cut(s)	188, 450
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	9 cut(s)	147, 161, 164, 171, 177, 468, 481, 502, 521
BspANI	GGCC	3 cut(s)	272, 419, 480
BspCNI	CTCAG	1 cut(s)	379
BspDI	ATCGAT	1 cut(s)	325
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	264
BspMAI	CTGCAG	1 cut(s)	540
BspT104I	TTCGAA	2 cut(s)	728, 734
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	267, 441, 963
BssMI	GATC	1 cut(s)	322
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	2 cut(s)	267, 441
Bst2UI	CCWGG	2 cut(s)	230, 818
Bst4CI	ACNGT	1 cut(s)	1128
Bst6I	CTCTTC	2 cut(s)	872, 1028
BstACI	GRCGYC	1 cut(s)	551
BstBI	TTCGAA	2 cut(s)	728, 734
BstC8I	GCNNGC	2 cut(s)	450, 960
BstDEI	CTNAG	2 cut(s)	366, 1017
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstF5I	GGATG	4 cut(s)	173, 325, 362, 496
BstFNI	CGCG	1 cut(s)	521
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	2 cut(s)	367, 983
BstMBI	GATC	1 cut(s)	322
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	2 cut(s)	508, 959
BstNI	CCWGG	2 cut(s)	230, 818
BstNSI	RCATGY	3 cut(s)	953, 962, 1103
BstSCI	CCNGG	5 cut(s)	228, 483, 816, 953, 962
BstSFI	CTRYAG	2 cut(s)	197, 536
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	4 cut(s)	295, 439, 550, 668
BstV2I	GAAGAC	2 cut(s)	3, 939
Bsu15I	ATCGAT	1 cut(s)	325
BsuRI	GGCC	3 cut(s)	272, 419, 480
BsuTUI	ATCGAT	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	4 cut(s)	173, 325, 362, 496
Cac8I	GCNNGC	2 cut(s)	450, 960
CaiI	CAGNNNCTG	3 cut(s)	289, 547, 854
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	5 cut(s)	211, 262, 433, 478, 814
ClaI	ATCGAT	1 cut(s)	325
CseI	GACGC	3 cut(s)	349, 559, 1000
CsiI	ACCWGGT	1 cut(s)	816
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	3 cut(s)	950, 959, 1100
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	2 cut(s)	366, 1017
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	872, 1028
EarI	CTCTTC	2 cut(s)	872, 1028
EciI	GGCGGA	2 cut(s)	136, 150
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	267, 441
Eco24I	GRGCYC	2 cut(s)	188, 450
Eco47I	GGWCC	4 cut(s)	211, 262, 433, 814
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	726
EcoICRI	GAGCTC	1 cut(s)	186
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	211, 262
EcoRI	GAATTC	4 cut(s)	724, 730, 736, 882
EcoRII	CCWGG	2 cut(s)	228, 816
EcoT14I	CCWWGG	2 cut(s)	267, 441
EcoT22I	ATGCAT	1 cut(s)	1105
EcoT38I	GRGCYC	2 cut(s)	188, 450
ErhI	CCWWGG	2 cut(s)	267, 441
Esp3I	CGTCTC	2 cut(s)	367, 983
FaeI	CATG	3 cut(s)	953, 962, 1103
FaiI	YATR	9 cut(s)	143, 581, 951, 960, 1053, 1061, 1063, 1065, 1101
FaqI	GGGAC	2 cut(s)	178, 248
FatI	CATG	3 cut(s)	949, 958, 1099
FauI	CCCGC	2 cut(s)	461, 495
Fnu4HI	GCNGC	6 cut(s)	164, 284, 453, 481, 539, 657
FokI	GGATG	4 cut(s)	160, 332, 369, 503
FriOI	GRGCYC	2 cut(s)	188, 450
Fsp4HI	GCNGC	6 cut(s)	164, 284, 453, 481, 539, 657
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	6 cut(s)	164, 284, 453, 481, 539, 657
GsuI	CTGGAG	2 cut(s)	212, 813
HaeIII	GGCC	3 cut(s)	272, 419, 480
HapII	CCGG	4 cut(s)	203, 485, 954, 963
HgaI	GACGC	3 cut(s)	349, 559, 1000
Hin1I	GRCGYC	1 cut(s)	551
Hin1II	CATG	3 cut(s)	953, 962, 1103
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	7 cut(s)	132, 327, 392, 422, 428, 701, 851
HpaII	CCGG	4 cut(s)	203, 485, 954, 963
HphI	GGTGA	5 cut(s)	34, 430, 782, 869, 992
Hpy166II	GTNNAC	1 cut(s)	1094
Hpy188I	TCNGA	5 cut(s)	222, 397, 427, 706, 1132
Hpy188III	TCNNGA	4 cut(s)	331, 389, 792, 887
Hpy8I	GTNNAC	1 cut(s)	1094
Hpy99I	CGWCG	3 cut(s)	10, 31, 559
HpyAV	CCTTC	3 cut(s)	595, 601, 1022
HpyCH4III	ACNGT	1 cut(s)	1128
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	538, 595, 1087, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	508, 959
HpyF3I	CTNAG	2 cut(s)	366, 1017
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	551
Hsp92II	CATG	3 cut(s)	953, 962, 1103
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	191, 231, 688
Lsp1109I	GCAGC	4 cut(s)	295, 439, 550, 668
LweI	GCATC	3 cut(s)	182, 347, 582
MabI	ACCWGGT	1 cut(s)	816
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	857
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	8 cut(s)	3, 6, 638, 680, 889, 944, 1045, 1091
MfeI	CAATTG	1 cut(s)	809
MhlI	GDGCHC	2 cut(s)	188, 450
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	2 cut(s)	297, 450
Mph1103I	ATGCAT	1 cut(s)	1105
MseI	TTAA	3 cut(s)	804, 908, 1044
MslI	CAYNNNNRTG	1 cut(s)	999
MspI	CCGG	4 cut(s)	203, 485, 954, 963
MspR9I	CCNGG	5 cut(s)	230, 485, 818, 955, 964
MunI	CAATTG	1 cut(s)	809
MvaI	CCWGG	2 cut(s)	230, 818
MvnI	CGCG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	508, 959
NciI	CCSGG	3 cut(s)	485, 955, 964
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	3 cut(s)	953, 962, 1103
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	857
NsiI	ATGCAT	1 cut(s)	1105
NspI	RCATGY	3 cut(s)	953, 962, 1103
NspV	TTCGAA	2 cut(s)	728, 734
PaeI	GCATGC	1 cut(s)	962
PcsI	WCGNNNNNNNCGW	2 cut(s)	188, 1115
PfeI	GAWTC	6 cut(s)	132, 327, 392, 422, 701, 851
PflFI	GACNNNGTC	2 cut(s)	431, 553
PfoI	TCCNGGA	1 cut(s)	228
PkrI	GCNGC	6 cut(s)	165, 285, 454, 482, 540, 658
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PpuMI	RGGWCCY	2 cut(s)	211, 262
Psp124BI	GAGCTC	1 cut(s)	188
Psp5II	RGGWCCY	2 cut(s)	211, 262
Psp6I	CCWGG	2 cut(s)	228, 816
PspGI	CCWGG	2 cut(s)	228, 816
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	5 cut(s)	211, 262, 433, 478, 814
PspPPI	RGGWCCY	2 cut(s)	211, 262
PstI	CTGCAG	1 cut(s)	540
PstNI	CAGNNNCTG	3 cut(s)	289, 547, 854
PsyI	GACNNNGTC	2 cut(s)	431, 553
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	999
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	804, 908, 1044
SatI	GCNGC	6 cut(s)	164, 284, 453, 481, 539, 657
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	5 cut(s)	211, 262, 433, 478, 814
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	5 cut(s)	230, 485, 818, 955, 964
SduI	GDGCHC	2 cut(s)	188, 450
SexAI	ACCWGGT	1 cut(s)	816
SfaNI	GCATC	3 cut(s)	182, 347, 582
SfcI	CTRYAG	2 cut(s)	197, 536
SfuI	TTCGAA	2 cut(s)	728, 734
SinI	GGWCC	4 cut(s)	211, 262, 433, 814
SmiMI	CAYNNNNRTG	1 cut(s)	999
SphI	GCATGC	1 cut(s)	962
SsiI	CCGC	9 cut(s)	147, 161, 164, 171, 177, 468, 481, 502, 521
SspMI	CTAG	1 cut(s)	461
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	5 cut(s)	228, 483, 816, 953, 962
StyI	CCWWGG	2 cut(s)	267, 441
TaaI	ACNGT	1 cut(s)	1128
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	9 cut(s)	34, 182, 207, 325, 414, 557, 728, 734, 1109
TaqII	GACCGA	1 cut(s)	421
TauI	GCSGC	2 cut(s)	166, 483
TfiI	GAWTC	6 cut(s)	132, 327, 392, 422, 701, 851
Tru1I	TTAA	3 cut(s)	804, 908, 1044
Tru9I	TTAA	3 cut(s)	804, 908, 1044
TseFI	GTSAC	1 cut(s)	857
TseI	GCWGC	4 cut(s)	283, 452, 538, 656
Tsp45I	GTSAC	1 cut(s)	857
TspGWI	ACGGA	1 cut(s)	244
Tth111I	GACNNNGTC	2 cut(s)	431, 553
VpaK11BI	GGWCC	4 cut(s)	211, 262, 433, 814
XagI	CCTNNNNNAGG	1 cut(s)	440
XapI	RAATTY	5 cut(s)	304, 724, 730, 736, 882
XceI	RCATGY	3 cut(s)	953, 962, 1103
XspI	CTAG	1 cut(s)	461
Zsp2I	ATGCAT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.