Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015104

Physical Location & Seq

Genomic Coordinates Reverse (-)

84244477 .. 84245682

Gene Structure 1206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG495500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGTCGTCGTCTTCTTCTATCTCATCCTCGTTTCGGTTATTCACTACCAAAATCCCCCACTCTTCTTCTCTAAACCCCAAAACCCTCTCCGCCTTCCCAAAACACCCAAACTTCTCTTCCTTCCGTCGACCCATCTCTTTCGAAAGAATCCCCACCATATCCTCATCCCGATCCCCATCTGCCTTAGCACCATCAGCTTCAATGCCCCTGCAACCCATCGAAGAACTCCCCCCGAAGCTTCGAGAAATTGTCAAGCTCTTCCAGTCCGTACCGGTTCCAAAAGCCAAGTACGAGGAGCTCCTGTACTACGGCAAGAAACTCAAACCCCTCGAAGATAAGTACAAGACAAAAGAGAACAAGGTCGAAGGCTGTGTCTCGCAGGTTTGGGTCCGAGCCTACCTCGATTCCGACAAGAACGTGTTCTTTGAGGCCGATTCCGACGCGCTTATCTCGAAAGGTCTCGCTGCTCTGCTCGTTAAAGGGCTCTCGGGTGAACCCGTGGAGGAAATTTTGAGGGTCCGACCCGATTTCGCGCTCCATCTTGGGCTTCAGCAGAGCTTGTCACCTGGTAGGAATAATGGGTTTTTGAATATGTTGAAGTTGATGCAGAAAAAGGCTGAGGATTTGGTTAGTGGCTCGGATTCTGTGGATTTGGGATTGAATTCTCAAGTGGGTGGTGAAAAGATTTCGACTTTGGGTTCGGAAATCGATGGTGGCATTGAGGGTTCTAGTGTTGGATTGAGCTCTAATGAAAATGCTGAGCAATTGAGTGGCACTAGTGAAAAGATTTCGACTTCGGGTTCGAGAATCAATGGTGGCATTGAGAGTGTGAATGTTGAATCGAGGTCAGAAGGAAATGTGAAGGAATTGGAGGTGGTAGGGAGTGTTTCGAATGAAGAGGAGTCGAATTCGGGTGATTTGGGGGGTCGAGGGAAGAGAATTAAGGAAGCATTGGAGAGAGAGCTTAGTCCTGTGGAATTGGAAGTAGAGGATATCTCTTACCAGCACGTCGGGCATGCCGGAGTTAGAGGAAGTGGTGATGGGGAGACGCATTTCAATGTGAGAGTTGTGACTAAGGAGTTTGAAGGGAAGAGTATGATCAAGAGGCATAGGCTCATCTACGGCTTGTTGCAAGAGGAGTTGCAGAGTGGACTACATGCATTGTCTATCGAGGCGAAGACGCCAGCTGAAGTGAGTACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BolA SufE

Protein Analysis

401

Amino Acids

43.53

Weight (kDa)

6.01

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	85 - 204	2.8e-39	Fe-S metabolism associated domain
BolA	PF01722	318 - 397	9.8e-29	BolA-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26500
fragaria_vesca	FvH4_3g42140
malus_domestica	MD11G1039000.v1.1
prunus_persica	Prupe.6G029600_v2.0.a1 Prupe.6G029600_v2.0.a1
pyrus_communis	pycom03g02920
rosa_chinensis	RchiOBHm_Chr5g0075351
rosa_laevigata	RLG00000036552
rosa_multiflora	Rmu_sc0000770.1_g000033
rosa_roxburghii	Rroxscaffold_1G00006180
rosa_rugosa	Rorug05G0439000
rosa_samantha	Rh5AG495500 Rh5BG517200 Rh5CG540800 Rh5DG532300
rosa_wichuraiana	Rw5G045980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	127
AccII	CGCG	2 cut(s)	443, 533
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	3 cut(s)	507, 661, 907
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	1181
AfaI	GTAC	5 cut(s)	270, 290, 305, 341, 1198
AfiI	CCNNNNNNNGG	1 cut(s)	33
AflIII	ACRYGT	1 cut(s)	417
AgeI	ACCGGT	1 cut(s)	271
AgsI	TTSAA	7 cut(s)	201, 589, 598, 661, 839, 1057, 1085
AhlI	ACTAGT	1 cut(s)	776
AjiI	CACGTC	1 cut(s)	1009
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	100, 132
AluBI	AGCT	8 cut(s)	197, 238, 256, 298, 558, 744, 964, 1187
AluI	AGCT	8 cut(s)	197, 238, 256, 298, 558, 744, 964, 1187
Alw21I	GWGCWC	2 cut(s)	300, 746
Alw26I	GTCTC	3 cut(s)	379, 464, 1040
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	487
AoxI	GGCC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	3 cut(s)	507, 661, 907
ArsI	GACNNNNNNTTYG	6 cut(s)	357, 389, 682, 714, 784, 816
AsiGI	ACCGGT	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	445, 535
AspS9I	GGNCC	2 cut(s)	388, 517
AsuHPI	GGTGA	5 cut(s)	503, 555, 689, 926, 1049
AsuII	TTCGAA	2 cut(s)	141, 890
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	388, 517
BanII	GRGCYC	3 cut(s)	300, 486, 746
BbsI	GAAGAC	2 cut(s)	3, 1184
Bbv12I	GWGCWC	2 cut(s)	300, 746
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	7 cut(s)	140, 184, 199, 224, 546, 704, 1034
BceAI	ACGGC	2 cut(s)	325, 1138
BciT130I	CCWGG	1 cut(s)	567
BclI	TGATCA	1 cut(s)	1098
BcoDI	GTCTC	3 cut(s)	379, 464, 1040
BcuI	ACTAGT	1 cut(s)	776
BfaI	CTAG	2 cut(s)	729, 777
BfuAI	ACCTGC	1 cut(s)	370
BisI	GCNGC	1 cut(s)	465
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	2 cut(s)	388, 517
BmeT110I	CYCGRG	1 cut(s)	487
BmgBI	CACGTC	1 cut(s)	1009
BmgT120I	GGNCC	2 cut(s)	388, 517
BmiI	GGNNCC	3 cut(s)	276, 389, 518
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	594
BpiI	GAAGAC	2 cut(s)	3, 1184
BplI	GAGNNNNNCTC	4 cut(s)	384, 416, 980, 1012
Bpu10I	CCTNAGC	2 cut(s)	184, 618
Bpu1102I	GCTNAGC	1 cut(s)	759
Bpu14I	TTCGAA	2 cut(s)	141, 890
BpuEI	CTTGAG	1 cut(s)	651
Bsa29I	ATCGAT	1 cut(s)	708
BsaBI	GATNNNNATC	1 cut(s)	175
BsaHI	GRCGYC	1 cut(s)	1181
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	1 cut(s)	262
Bse8I	GATNNNNATC	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	567
BseCI	ATCGAT	1 cut(s)	708
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	2 cut(s)	23, 164
BseJI	GATNNNNATC	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	609, 750
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	3 cut(s)	308, 914, 1151
BseXI	GCAGC	1 cut(s)	451
Bsh1236I	CGCG	2 cut(s)	443, 533
BshFI	GGCC	1 cut(s)	431
BshTI	ACCGGT	1 cut(s)	271
BshVI	ATCGAT	1 cut(s)	708
BsiHKAI	GWGCWC	2 cut(s)	300, 746
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	272, 1020
BslI	CCNNNNNNNGG	1 cut(s)	33
BsmAI	GTCTC	3 cut(s)	379, 464, 1040
BsmBI	CGTCTC	1 cut(s)	1040
BsnI	GGCC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	464
BsoBI	CYCGRG	1 cut(s)	487
Bsp119I	TTCGAA	2 cut(s)	141, 890
Bsp1286I	GDGCHC	3 cut(s)	300, 486, 746
Bsp143I	GATC	2 cut(s)	170, 1098
Bsp1720I	GCTNAGC	1 cut(s)	759
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	1 cut(s)	431
BspCNI	CTCAG	2 cut(s)	610, 751
BspDI	ATCGAT	1 cut(s)	708
BspFNI	CGCG	2 cut(s)	443, 533
BspLI	GGNNCC	3 cut(s)	276, 389, 518
BspMI	ACCTGC	1 cut(s)	370
BspPI	GGATC	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	263
BspT104I	TTCGAA	2 cut(s)	141, 890
BspTNI	GGTCTC	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	2 cut(s)	170, 1098
BssNI	GRCGYC	1 cut(s)	1181
Bst2UI	CCWGG	1 cut(s)	567
Bst6I	CTCTTC	6 cut(s)	67, 121, 263, 891, 929, 1085
BstACI	GRCGYC	1 cut(s)	1181
BstBI	TTCGAA	2 cut(s)	141, 890
BstC8I	GCNNGC	2 cut(s)	1017, 1185
BstDEI	CTNAG	5 cut(s)	184, 618, 759, 965, 1074
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	23, 164
BstFNI	CGCG	2 cut(s)	443, 533
BstHHI	GCGC	2 cut(s)	445, 535
BstKTI	GATC	2 cut(s)	173, 1101
BstMAI	GTCTC	3 cut(s)	379, 464, 1040
BstMBI	GATC	2 cut(s)	170, 1098
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 1012
BstNI	CCWGG	1 cut(s)	567
BstNSI	RCATGY	2 cut(s)	1019, 1160
BstSCI	CCNGG	1 cut(s)	565
BstUI	CGCG	2 cut(s)	443, 533
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	2 cut(s)	3, 1184
Bsu15I	ATCGAT	1 cut(s)	708
BsuRI	GGCC	1 cut(s)	431
BsuTUI	ATCGAT	1 cut(s)	708
BtgI	CCRYGG	1 cut(s)	498
BtrI	CACGTC	1 cut(s)	1009
BtsCI	GGATG	2 cut(s)	23, 164
BveI	ACCTGC	1 cut(s)	370
Cac8I	GCNNGC	2 cut(s)	1017, 1185
CfoI	GCGC	2 cut(s)	445, 535
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	388, 517
ClaI	ATCGAT	1 cut(s)	708
CseI	GACGC	3 cut(s)	449, 1057, 1189
CsiI	ACCWGGT	1 cut(s)	565
Csp6I	GTAC	5 cut(s)	269, 289, 304, 340, 1197
CspAI	ACCGGT	1 cut(s)	271
CviAII	CATG	2 cut(s)	1016, 1157
CviQI	GTAC	5 cut(s)	269, 289, 304, 340, 1197
DdeI	CTNAG	5 cut(s)	184, 618, 759, 965, 1074
DpnI	GATC	2 cut(s)	172, 1100
DpnII	GATC	2 cut(s)	170, 1098
Eam1104I	CTCTTC	6 cut(s)	67, 121, 263, 891, 929, 1085
EarI	CTCTTC	6 cut(s)	67, 121, 263, 891, 929, 1085
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	2 cut(s)	298, 744
Eco24I	GRGCYC	3 cut(s)	300, 486, 746
Eco31I	GGTCTC	1 cut(s)	464
Eco32I	GATATC	1 cut(s)	994
Eco47I	GGWCC	2 cut(s)	388, 517
Eco53kI	GAGCTC	2 cut(s)	298, 744
Eco57I	CTGAAG	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	487
EcoICRI	GAGCTC	2 cut(s)	298, 744
EcoRI	GAATTC	2 cut(s)	661, 907
EcoRII	CCWGG	1 cut(s)	565
EcoRV	GATATC	1 cut(s)	994
EcoT22I	ATGCAT	1 cut(s)	1162
EcoT38I	GRGCYC	3 cut(s)	300, 486, 746
Esp3I	CGTCTC	1 cut(s)	1040
FaeI	CATG	2 cut(s)	1019, 1160
FaiI	YATR	6 cut(s)	158, 593, 1017, 1097, 1110, 1158
FatI	CATG	2 cut(s)	1015, 1156
FbaI	TGATCA	1 cut(s)	1098
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	2 cut(s)	10, 151
FriOI	GRGCYC	3 cut(s)	300, 486, 746
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	729, 777
GlaI	GCGC	2 cut(s)	444, 534
GluI	GCNGC	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	431
HapII	CCGG	2 cut(s)	272, 1020
HgaI	GACGC	3 cut(s)	449, 1057, 1189
HhaI	GCGC	2 cut(s)	445, 535
Hin1I	GRCGYC	1 cut(s)	1181
Hin1II	CATG	2 cut(s)	1019, 1160
Hin6I	GCGC	2 cut(s)	443, 533
HinP1I	GCGC	2 cut(s)	443, 533
HincII	GTYRAC	1 cut(s)	128
HindII	GTYRAC	1 cut(s)	128
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	7 cut(s)	147, 404, 434, 641, 807, 839, 902
HpaII	CCGG	2 cut(s)	272, 1020
HphI	GGTGA	5 cut(s)	503, 555, 689, 926, 1049
Hpy166II	GTNNAC	3 cut(s)	128, 494, 1151
Hpy188I	TCNGA	7 cut(s)	392, 409, 439, 521, 640, 703, 850
Hpy188III	TCNNGA	5 cut(s)	168, 242, 451, 804, 1102
Hpy8I	GTNNAC	3 cut(s)	128, 494, 1151
Hpy99I	CGWCG	4 cut(s)	10, 129, 443, 1013
HpyAV	CCTTC	6 cut(s)	103, 130, 359, 845, 856, 1079
HpyCH4IV	ACGT	2 cut(s)	417, 1008
HpyCH4V	TGCA	5 cut(s)	211, 607, 1132, 1144, 1160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 1012
HpyF3I	CTNAG	5 cut(s)	184, 618, 759, 965, 1074
HpySE526I	ACGT	2 cut(s)	417, 1008
Hsp92I	GRCGYC	1 cut(s)	1181
Hsp92II	CATG	2 cut(s)	1019, 1160
HspAI	GCGC	2 cut(s)	443, 533
Ksp22I	TGATCA	1 cut(s)	1098
Kzo9I	GATC	2 cut(s)	170, 1098
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	3 cut(s)	295, 303, 540
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	594
MabI	ACCWGGT	1 cut(s)	565
MaeI	CTAG	2 cut(s)	729, 777
MaeII	ACGT	2 cut(s)	417, 1008
MaeIII	GTNAC	2 cut(s)	561, 1069
MalI	GATC	2 cut(s)	172, 1100
MboI	GATC	2 cut(s)	170, 1098
MfeI	CAATTG	1 cut(s)	764
MhlI	GDGCHC	3 cut(s)	300, 486, 746
MluCI	AATT	8 cut(s)	246, 507, 661, 764, 866, 907, 939, 977
MlyI	GAGTC	1 cut(s)	911
MmeI	TCCRAC	4 cut(s)	432, 462, 544, 715
Mph1103I	ATGCAT	1 cut(s)	1162
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	2 cut(s)	477, 942
MslI	CAYNNNNRTG	1 cut(s)	1056
MspA1I	CMGCKG	1 cut(s)	1187
MspI	CCGG	2 cut(s)	272, 1020
MspR9I	CCNGG	1 cut(s)	567
MunI	CAATTG	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	2 cut(s)	443, 533
MwoI	GCNNNNNNNGC	2 cut(s)	194, 1012
NdeII	GATC	2 cut(s)	170, 1098
NlaIII	CATG	2 cut(s)	1019, 1160
NlaIV	GGNNCC	3 cut(s)	276, 389, 518
NmuCI	GTSAC	2 cut(s)	561, 1069
NsiI	ATGCAT	1 cut(s)	1162
NspI	RCATGY	2 cut(s)	1019, 1160
NspV	TTCGAA	2 cut(s)	141, 890
PaeI	GCATGC	1 cut(s)	1019
PciSI	GCTCTTC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	6 cut(s)	147, 404, 434, 641, 807, 839
PinAI	ACCGGT	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	910
PpsI	GAGTC	1 cut(s)	910
Psp124BI	GAGCTC	2 cut(s)	300, 746
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	3 cut(s)	276, 389, 518
PspPI	GGNCC	2 cut(s)	388, 517
PvuII	CAGCTG	1 cut(s)	1187
RsaI	GTAC	5 cut(s)	270, 290, 305, 341, 1198
RsaNI	GTAC	5 cut(s)	269, 289, 304, 340, 1197
RseI	CAYNNNNRTG	1 cut(s)	1056
SacI	GAGCTC	2 cut(s)	300, 746
SalI	GTCGAC	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	477, 942
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	2 cut(s)	170, 1098
Sau96I	GGNCC	2 cut(s)	388, 517
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	3 cut(s)	300, 486, 746
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	1 cut(s)	594
SfuI	TTCGAA	2 cut(s)	141, 890
SinI	GGWCC	2 cut(s)	388, 517
SmiMI	CAYNNNNRTG	1 cut(s)	1056
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
SpeI	ACTAGT	1 cut(s)	776
SphI	GCATGC	1 cut(s)	1019
Sse9I	AATT	8 cut(s)	246, 507, 661, 764, 866, 907, 939, 977
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	729, 777
SstI	GAGCTC	2 cut(s)	300, 746
StyD4I	CCNGG	1 cut(s)	565
TaiI	ACGT	2 cut(s)	420, 1011
TasI	AATT	8 cut(s)	246, 507, 661, 764, 866, 907, 939, 977
TatI	WGTACW	3 cut(s)	303, 339, 1196
TfiI	GAWTC	6 cut(s)	147, 404, 434, 641, 807, 839
Tru1I	TTAA	2 cut(s)	477, 942
Tru9I	TTAA	2 cut(s)	477, 942
TseFI	GTSAC	2 cut(s)	561, 1069
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	2 cut(s)	561, 1069
TspDTI	ATGAA	2 cut(s)	765, 909
TspGWI	ACGGA	2 cut(s)	113, 256
VpaK11BI	GGWCC	2 cut(s)	388, 517
XapI	RAATTY	3 cut(s)	507, 661, 907
XceI	RCATGY	2 cut(s)	1019, 1160
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	2 cut(s)	729, 777
Zsp2I	ATGCAT	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.