Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Reverse (-)

13408383 .. 13411177

Gene Structure 2795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCGCAGTGCATAGACGGTTTCAAGCATGTATGCTCCTCTTTTTTCCGGTGTTTTGATATCGATATTTACAAACAATCTGGAGGCCTTGGTGACCCTGAACTTCTTGCGAGAGAGACAGTTTTTAGCGTGAGTGAAATAGAGGCTCTCTATGAGCTGTTTAAGAAAATCAGCAGTGCTGTGATTGATGATGGGCTAATAAACAAGGAAGAATTTCAGTTAGCCTTGTTCAAGACAAATAAAAAAGAGAGCTTGTTTGCAGACCGGGTATTCGATTTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACAAGATTGACTTTTCGTTTCAGCTATATGATCTTAAGCAGCAAGGTTTCATAGAGAGGCAAGAGGTGAAGCAAATGGTGGTGGCTACTCTTGCTGAGTCCGGCATGAACCTGTCAGACGAAATCATAGAGAGTATAATCGACAAGACATTTGAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAGTGGAGAACCCTTGTTCTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAAGGATATAACAACTACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

226

Amino Acids

26.03

Weight (kDa)

4.8

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	121 - 187	5.2e-09	EF-hand domain pair
EF-hand_5	PF13202	168 - 192	3.4e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	655
Acc36I	ACCTGC	1 cut(s)	655
AccII	CGCG	1 cut(s)	325
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	664
AflII	CTTAAG	2 cut(s)	398, 620
AgsI	TTSAA	2 cut(s)	25, 232
AluBI	AGCT	5 cut(s)	157, 252, 388, 524, 648
AluI	AGCT	5 cut(s)	157, 252, 388, 524, 648
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	554
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	403
ApoI	RAATTY	1 cut(s)	212
ArsI	GACNNNNNNTTYG	4 cut(s)	254, 286, 497, 529
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	104, 442
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	110
BfrI	CTTAAG	2 cut(s)	398, 620
BfuAI	ACCTGC	1 cut(s)	655
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	1 cut(s)	266
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	592
BmuI	ACTGGG	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	2 cut(s)	102, 596
BpuMI	CCSGG	1 cut(s)	266
Bsa29I	ATCGAT	2 cut(s)	63, 549
BsaJI	CCNNGG	1 cut(s)	88
BsaWI	WCCGGW	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse1I	ACTGG	2 cut(s)	309, 613
BseCI	ATCGAT	2 cut(s)	63, 549
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	2 cut(s)	343, 583
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	450, 592
BseNI	ACTGG	2 cut(s)	309, 613
BseRI	GAGGAG	2 cut(s)	28, 329
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	1 cut(s)	87
BshVI	ATCGAT	2 cut(s)	63, 549
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	3 cut(s)	49, 265, 465
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	394, 546
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	451, 591
BspDI	ATCGAT	2 cut(s)	63, 549
BspFNI	CGCG	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	655
BspPI	GGATC	1 cut(s)	554
BspTI	CTTAAG	2 cut(s)	398, 620
BsrI	ACTGG	2 cut(s)	309, 613
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	394, 546
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	20, 121
Bst6I	CTCTTC	1 cut(s)	552
BstAFI	CTTAAG	2 cut(s)	398, 620
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	2 cut(s)	459, 578
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	343, 583
BstFNI	CGCG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	397, 549
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	2 cut(s)	394, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	369
Bsu15I	ATCGAT	2 cut(s)	63, 549
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	2 cut(s)	63, 549
BtsCI	GGATG	2 cut(s)	343, 583
BtsI	GCAGTG	2 cut(s)	14, 181
BtsIMutI	CAGTG	2 cut(s)	14, 181
BveI	ACCTGC	1 cut(s)	655
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	325
ClaI	ATCGAT	2 cut(s)	63, 549
CviAII	CATG	3 cut(s)	29, 469, 536
DdeI	CTNAG	2 cut(s)	459, 578
DpnI	GATC	2 cut(s)	396, 548
DpnII	GATC	2 cut(s)	394, 546
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	88
Eco147I	AGGCCT	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	32, 472, 539
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FatI	CATG	3 cut(s)	28, 468, 535
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	330, 570
Fsp4HI	GCNGC	1 cut(s)	404
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	2 cut(s)	102, 596
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	3 cut(s)	49, 265, 465
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	32, 472, 539
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	2 cut(s)	461, 607
HpaII	CCGG	3 cut(s)	49, 265, 465
HphI	GGTGA	2 cut(s)	104, 442
Hpy188I	TCNGA	2 cut(s)	481, 645
Hpy188III	TCNNGA	2 cut(s)	81, 232
HpyAV	CCTTC	2 cut(s)	597, 602
HpyCH4III	ACNGT	2 cut(s)	20, 121
HpyCH4V	TGCA	2 cut(s)	12, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	459, 578
Hsp92II	CATG	3 cut(s)	32, 472, 539
HspAI	GCGC	1 cut(s)	323
Kzo9I	GATC	2 cut(s)	394, 546
LmnI	GCTCC	2 cut(s)	41, 358
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	592
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	396, 548
MboI	GATC	2 cut(s)	394, 546
MboII	GAAGA	3 cut(s)	221, 374, 569
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	470, 601
MnlI	CCTC	8 cut(s)	49, 77, 136, 307, 414, 421, 511, 537
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	3 cut(s)	162, 399, 621
MslI	CAYNNNNRTG	1 cut(s)	348
MspCI	CTTAAG	2 cut(s)	398, 620
MspI	CCGG	3 cut(s)	49, 265, 465
MspR9I	CCNGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	1 cut(s)	455
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	2 cut(s)	394, 546
NlaIII	CATG	3 cut(s)	32, 472, 539
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	32
PaqCI	CACCTGC	1 cut(s)	655
PceI	AGGCCT	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	2 cut(s)	469, 601
PpsI	GAGTC	2 cut(s)	469, 601
PspEI	GGTNACC	1 cut(s)	92
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	162, 399, 621
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	2 cut(s)	394, 546
SchI	GAGTC	2 cut(s)	470, 601
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	592
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	398, 620
SmoI	CTYRAG	2 cut(s)	398, 620
Sse9I	AATT	1 cut(s)	212
SseBI	AGGCCT	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	20, 121
TaqI	TCGA	4 cut(s)	63, 273, 504, 549
TasI	AATT	1 cut(s)	212
Tru1I	TTAA	3 cut(s)	162, 399, 621
Tru9I	TTAA	3 cut(s)	162, 399, 621
TscAI	CASTG	2 cut(s)	14, 181
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	403
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	332, 403, 485
TspRI	CASTG	2 cut(s)	14, 181
Vha464I	CTTAAG	2 cut(s)	398, 620
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.