Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Forward (+)

61288199 .. 61289500

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0440400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGTGTCCTAATCCAGATTGGCACCGGACTGTTCACTGCCCCAACCTCACTCCAGCGCTCAAGGAAAGGCTAAAAGTAGCAAGAAGCAGCAGTCGAACTAAGGCTTTCCACCCTGATGACATGGCTTGTCATATTTGTCTAAAGACGACAGACCACTGGTCTTCAGAATGCTCTTACCTGCTCGAATATCCGAGGGGTGCAATTGTTGGCCGTTTTGCTCAAATAATTTGCTTGTGTTGTGGTGAGGAGATGCCCCACCCTGGTGTGCCTGGTCTTGACTGGAAAGCAAGAGTTATTCTCAAGCCTGCTGTTACTTATCCCAGTATCAAGGAACAGCTGATGGCACTGACACTGGCATCAGAAGGCGCAGCTGATGGCACTAGCAACAACGCAAGTACATCAGAGGGCGCAGCATATGGCACTGGCATCAAGGCAAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

147

Amino Acids

15.89

Weight (kDa)

7.6

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	1 cut(s)	397
AfeI	AGCGCT	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	260
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	259, 268
AleI	CACNNNNGTG	1 cut(s)	261
AluBI	AGCT	2 cut(s)	337, 371
AluI	AGCT	2 cut(s)	337, 371
Aor51HI	AGCGCT	1 cut(s)	57
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	3 cut(s)	87, 368, 410
AspLEI	GCGC	3 cut(s)	58, 368, 410
AsuHPI	GGTGA	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	99, 380, 422
BccI	CCATC	2 cut(s)	334, 368
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	2 cut(s)	261, 270
BfaI	CTAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	59
BfuAI	ACCTGC	1 cut(s)	186
BisI	GCNGC	3 cut(s)	88, 369, 411
BlsI	GCNGC	3 cut(s)	89, 370, 412
Bme1390I	CCNGG	2 cut(s)	261, 270
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	2 cut(s)	261, 270
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	3 cut(s)	240, 365, 435
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	282, 314
BpmI	CTGGAG	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	44, 284
BsaJI	CCNNGG	2 cut(s)	191, 259
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	5 cut(s)	161, 284, 321, 357, 427
BseBI	CCWGG	2 cut(s)	261, 270
BseDI	CCNNGG	2 cut(s)	191, 259
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseNI	ACTGG	5 cut(s)	161, 284, 321, 357, 427
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	3 cut(s)	99, 380, 422
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	23
BspMI	ACCTGC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	21
BsrI	ACTGG	5 cut(s)	161, 284, 321, 357, 427
BssECI	CCNNGG	2 cut(s)	191, 259
Bst2UI	CCWGG	2 cut(s)	261, 270
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	3 cut(s)	58, 368, 410
BstNI	CCWGG	2 cut(s)	261, 270
BstSCI	CCNGG	2 cut(s)	259, 268
BstV1I	GCAGC	3 cut(s)	99, 380, 422
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	34
BtsIMutI	CAGTG	5 cut(s)	34, 154, 344, 350, 420
BveI	ACCTGC	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	306
CfoI	GCGC	3 cut(s)	58, 368, 410
Csp6I	GTAC	1 cut(s)	396
CspCI	CAANNNNNGTGG	1 cut(s)	418
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	7 cut(s)	70, 104, 125, 210, 304, 337, 371
CviKI_1	RGCY	7 cut(s)	70, 104, 125, 210, 304, 337, 371
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	99
DriI	GACNNNNNGTC	1 cut(s)	157
EaeI	YGGCCR	1 cut(s)	208
Eam1105I	GACNNNNNGTC	1 cut(s)	157
Eco47III	AGCGCT	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	259, 268
FaeI	CATG	1 cut(s)	124
FaiI	YATR	4 cut(s)	122, 132, 415, 417
FatI	CATG	1 cut(s)	120
FauNDI	CATATG	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	88, 369, 411
Fsp4HI	GCNGC	3 cut(s)	88, 369, 411
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	3 cut(s)	57, 367, 409
GluI	GCNGC	3 cut(s)	88, 369, 411
GsuI	CTGGAG	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	25
HhaI	GCGC	3 cut(s)	58, 368, 410
Hin1II	CATG	1 cut(s)	124
Hin6I	GCGC	3 cut(s)	56, 366, 408
HinP1I	GCGC	3 cut(s)	56, 366, 408
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	166, 192, 361, 403
Hpy188III	TCNNGA	2 cut(s)	14, 275
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	124
HspAI	GCGC	3 cut(s)	56, 366, 408
Lsp1109I	GCAGC	3 cut(s)	99, 380, 422
LweI	GCATC	3 cut(s)	240, 365, 435
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	153
MfeI	CAATTG	1 cut(s)	201
MluCI	AATT	2 cut(s)	201, 225
MnlI	CCTC	4 cut(s)	56, 186, 238, 397
MslI	CAYNNNNRTG	2 cut(s)	114, 261
MspA1I	CMGCKG	2 cut(s)	337, 371
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	2 cut(s)	261, 270
MunI	CAATTG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	173
MvaI	CCWGG	2 cut(s)	261, 270
NdeI	CATATG	1 cut(s)	415
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	23
OliI	CACNNNNGTG	1 cut(s)	261
PctI	GAATGC	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	89, 370, 412
Psp6I	CCWGG	2 cut(s)	259, 268
PspGI	CCWGG	2 cut(s)	259, 268
PspN4I	GGNNCC	1 cut(s)	23
PvuII	CAGCTG	2 cut(s)	337, 371
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	114, 261
SatI	GCNGC	3 cut(s)	88, 369, 411
ScrFI	CCNGG	2 cut(s)	261, 270
SetI	ASST	4 cut(s)	48, 180, 339, 373
SfaNI	GCATC	3 cut(s)	240, 365, 435
SmiMI	CAYNNNNRTG	2 cut(s)	114, 261
SmlI	CTYRAG	2 cut(s)	59, 299
SmoI	CTYRAG	2 cut(s)	59, 299
Sse9I	AATT	2 cut(s)	201, 225
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	259, 268
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	94, 183
TasI	AATT	2 cut(s)	201, 225
TatI	WGTACW	1 cut(s)	395
TscAI	CASTG	5 cut(s)	41, 161, 351, 357, 427
TseI	GCWGC	3 cut(s)	87, 368, 410
TspRI	CASTG	5 cut(s)	41, 161, 351, 357, 427
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.