Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Reverse (-)

82078123 .. 82080629

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036575

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTTGCAGTGCATAGAGGGGTTAAAGCATTTATGTGCTTCCCTACTGAGGTGCTGTGATCTTGACTTGTATAAACAATCAAGAGGATTAGAAGACCCTGAAATTCTAGCTAGAGAAACAGTGTTTAGCGTGAGTGAAATAGAGGCACTTTATGAGTTATTTAAGAAGATCAGCAGTGCAGTGATTGATGACGGATTGATCAACAAGGAGGAGTTTCAATTGGCATTATTCAAGACAAACAAGAAAGAGAGCTTATTCGCTGATCGTGTACGTTTTTCTGTATTTGACTTGTTTGACACAAAGCACAATGGAATACTAGGTTTTGAAGAGTTTGCTCGCGCTCTCTCTGTCTTTCATCCTAACGCCCCCATCGACGATAAGATTGAGTTTTCTTTTCAATTATACGATCTCAAGCAACAAGGCTTCATTGAAAGGCAGGAGGTGAAGCAAATGGTAGTGGCTACCCTAGCGGAATCGGGCATGAATCTTTCAGACGAGGTGATAGAAAGTATAATCGATAAGGTGCTTTCTCAATCCGTCTTTTTGATTTCTGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

187

Amino Acids

21.21

Weight (kDa)

4.75

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	470
AcsI	RAATTY	1 cut(s)	102
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	5 cut(s)	218, 232, 326, 398, 431
AluBI	AGCT	2 cut(s)	110, 252
AluI	AGCT	2 cut(s)	110, 252
ApoI	RAATTY	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	454, 511
BbsI	GAAGAC	1 cut(s)	99
BccI	CCATC	1 cut(s)	377
BclI	TGATCA	1 cut(s)	198
BfaI	CTAG	4 cut(s)	107, 111, 317, 467
BpiI	GAAGAC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseCI	ATCGAT	1 cut(s)	516
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	339
BshVI	ATCGAT	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	58, 168, 198, 262, 406
BspACI	CCGC	1 cut(s)	470
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	339
BssMI	GATC	5 cut(s)	58, 168, 198, 262, 406
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	5 cut(s)	61, 171, 201, 265, 409
BstMBI	GATC	5 cut(s)	58, 168, 198, 262, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstUI	CGCG	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	516
BsuTUI	ATCGAT	1 cut(s)	516
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	3 cut(s)	14, 181, 186
BtsIMutI	CAGTG	4 cut(s)	14, 126, 181, 186
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	341
ClaI	ATCGAT	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	1 cut(s)	481
CviJI	RGCY	4 cut(s)	110, 252, 423, 461
CviKI_1	RGCY	4 cut(s)	110, 252, 423, 461
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	5 cut(s)	60, 170, 200, 264, 408
DpnII	GATC	5 cut(s)	58, 168, 198, 262, 406
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
FaeI	CATG	1 cut(s)	484
FaiI	YATR	7 cut(s)	14, 34, 72, 153, 403, 482, 512
FatI	CATG	1 cut(s)	480
FbaI	TGATCA	1 cut(s)	198
FokI	GGATG	1 cut(s)	342
FspBI	CTAG	4 cut(s)	107, 111, 317, 467
GlaI	GCGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	473, 484
HphI	GGTGA	2 cut(s)	454, 511
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	3 cut(s)	62, 81, 232
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	377
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	7, 12, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	5 cut(s)	58, 168, 198, 262, 406
LpnPI	CCDG	2 cut(s)	111, 422
MaeI	CTAG	4 cut(s)	107, 111, 317, 467
MaeII	ACGT	1 cut(s)	271
MalI	GATC	5 cut(s)	60, 170, 200, 264, 408
MboI	GATC	5 cut(s)	58, 168, 198, 262, 406
MboII	GAAGA	3 cut(s)	104, 178, 338
MfeI	CAATTG	1 cut(s)	218
MluCI	AATT	3 cut(s)	102, 218, 398
MnlI	CCTC	7 cut(s)	10, 42, 77, 136, 202, 433, 490
MseI	TTAA	3 cut(s)	23, 162, 559
MslI	CAYNNNNRTG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	5 cut(s)	58, 168, 198, 262, 406
NlaIII	CATG	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	473, 484
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	23, 162, 559
Sau3AI	GATC	5 cut(s)	58, 168, 198, 262, 406
SetI	ASST	8 cut(s)	53, 112, 254, 274, 322, 444, 501, 525
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	102, 218, 398
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	4 cut(s)	107, 111, 317, 467
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	372, 516
TasI	AATT	3 cut(s)	102, 218, 398
TfiI	GAWTC	2 cut(s)	473, 484
Tru1I	TTAA	3 cut(s)	23, 162, 559
Tru9I	TTAA	3 cut(s)	23, 162, 559
TscAI	CASTG	4 cut(s)	14, 126, 181, 186
TspDTI	ATGAA	3 cut(s)	344, 415, 497
TspGWI	ACGGA	2 cut(s)	207, 526
TspRI	CASTG	4 cut(s)	14, 126, 181, 186
XapI	RAATTY	1 cut(s)	102
XspI	CTAG	4 cut(s)	107, 111, 317, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.