Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Forward (+)

61280222 .. 61281558

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0440300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCAACAAAGGATTATGGAGGATCGTTATTAACATGCTGTGTGCTTTTGCTTGCGTTGTTTGCCGGAGGTGAAAGTTTCGCGCCAATGAGCAAGGAAAACTGTACATACGCAGTTACAATTGAAACAACATGCACAAAAGGCGCTTCAACCTCAAACAACATTAGCCTAAGATTTGGCGACACAAATTCTAATGGCGTTTTGGTAAAGCACCTAAACTCCAAGCACATAAGAAGGGTGGATCCACTAGAACCCCAAGTCCTTGACGATGTGCCTAGAAAACCATTTCAAGCTTGTGTTGTGGATCAGTTTCAAGTGAAGGGTCTATGCGTTGACTCACCCATCTGCTATTTGTATCTCAAACTGGCTGGAACTGATGACTGGCGGCCTGGTTTTGCTCAAGTCCATGTCATGGAGGGATCTCACTCTCATCTTAGCTCTGATTACTTCTACTTCCGCCGGTACCTGCCTCGCCGTGCTTGGCATGGTTTGGATGCGTGTGACAAAGAGGTCACTTCCTTTGGGATTAAGCAAAATAGGAAAGTCTTTGTAAAGAAACAAGGGAAACATATGTCCTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

194

Amino Acids

21.7

Weight (kDa)

8.89

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATS3	PF06232	26 - 167	2e-39	Embryo-specific protein 3, (ATS3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	474
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	412
AccII	CGCG	1 cut(s)	83
AciI	CCGC	2 cut(s)	385, 457
AclWI	GGATC	5 cut(s)	31, 236, 249, 312, 427
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	2 cut(s)	106, 464
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	4 cut(s)	125, 150, 290, 314
AjnI	CCWGG	1 cut(s)	388
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
AluBI	AGCT	2 cut(s)	293, 438
AluI	AGCT	2 cut(s)	293, 438
AlwI	GGATC	5 cut(s)	31, 236, 249, 312, 427
AoxI	GGCC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	187
Asp718I	GGTACC	1 cut(s)	462
AspLEI	GCGC	2 cut(s)	85, 146
AsuHPI	GGTGA	2 cut(s)	83, 330
BamHI	GGATCC	1 cut(s)	241
BanI	GGYRCC	1 cut(s)	462
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	459
BciT130I	CCWGG	1 cut(s)	390
BfaI	CTAG	2 cut(s)	248, 276
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	243, 464
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	384
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse118I	RCCGGY	1 cut(s)	459
Bse1I	ACTGG	2 cut(s)	369, 386
BseBI	CCWGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseNI	ACTGG	2 cut(s)	369, 386
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	388
BshNI	GGYRCC	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	66, 460
BslI	CCNNNNNNNGG	1 cut(s)	412
BsnI	GGCC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	104
Bsp143I	GATC	4 cut(s)	23, 241, 304, 419
BspACI	CCGC	2 cut(s)	385, 457
BspANI	GGCC	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	243, 464
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	5 cut(s)	31, 236, 249, 312, 427
BspT107I	GGYRCC	1 cut(s)	462
BsrFI	RCCGGY	1 cut(s)	459
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	369, 386
BssAI	RCCGGY	1 cut(s)	459
BssMI	GATC	4 cut(s)	23, 241, 304, 419
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	104
BstAUI	TGTACA	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	2 cut(s)	170, 434
BstF5I	GGATG	1 cut(s)	499
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	85, 146
BstKTI	GATC	4 cut(s)	26, 244, 307, 422
BstMBI	GATC	4 cut(s)	23, 241, 304, 419
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 141
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	2 cut(s)	39, 135
BstSCI	CCNGG	1 cut(s)	388
BstUI	CGCG	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	241, 419
BstYI	RGATCY	2 cut(s)	241, 419
BsuRI	GGCC	1 cut(s)	388
BtsCI	GGATG	1 cut(s)	499
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	54
CfoI	GCGC	2 cut(s)	85, 146
Cfr10I	RCCGGY	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	105, 463
CviAII	CATG	6 cut(s)	36, 132, 407, 412, 485, 582
CviJI	RGCY	5 cut(s)	168, 293, 368, 388, 438
CviKI_1	RGCY	5 cut(s)	168, 293, 368, 388, 438
CviQI	GTAC	2 cut(s)	105, 463
DdeI	CTNAG	2 cut(s)	170, 434
DpnI	GATC	4 cut(s)	25, 243, 306, 421
DpnII	GATC	4 cut(s)	23, 241, 304, 419
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
EciI	GGCGGA	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	388
FaeI	CATG	6 cut(s)	39, 135, 410, 415, 488, 585
FatI	CATG	6 cut(s)	35, 131, 406, 411, 484, 581
FauNDI	CATATG	1 cut(s)	570
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	2 cut(s)	248, 276
GlaI	GCGC	2 cut(s)	84, 145
GluI	GCNGC	1 cut(s)	386
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	2 cut(s)	66, 460
HhaI	GCGC	2 cut(s)	85, 146
Hin1II	CATG	6 cut(s)	39, 135, 410, 415, 488, 585
Hin6I	GCGC	2 cut(s)	83, 144
HinP1I	GCGC	2 cut(s)	83, 144
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	2 cut(s)	66, 460
HphI	GGTGA	2 cut(s)	83, 330
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	442
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	228, 313
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 141
HpyF3I	CTNAG	2 cut(s)	170, 434
Hsp92II	CATG	6 cut(s)	39, 135, 410, 415, 488, 585
HspAI	GCGC	2 cut(s)	83, 144
KpnI	GGTACC	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	23, 241, 304, 419
LpnPI	CCDG	8 cut(s)	79, 350, 354, 367, 375, 402, 473, 479
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	248, 276
MaeIII	GTNAC	3 cut(s)	115, 500, 511
MalI	GATC	4 cut(s)	25, 243, 306, 421
MboI	GATC	4 cut(s)	23, 241, 304, 419
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	2 cut(s)	241, 419
MluCI	AATT	2 cut(s)	120, 187
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	6 cut(s)	14, 62, 163, 409, 480, 502
MseI	TTAA	2 cut(s)	32, 528
MspI	CCGG	2 cut(s)	66, 460
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	62, 141
NdeI	CATATG	1 cut(s)	570
NdeII	GATC	4 cut(s)	23, 241, 304, 419
NlaIII	CATG	6 cut(s)	39, 135, 410, 415, 488, 585
NlaIV	GGNNCC	2 cut(s)	243, 464
NmuCI	GTSAC	2 cut(s)	500, 511
NspI	RCATGY	2 cut(s)	39, 135
PflMI	CCANNNNNTGG	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	243, 464
PsuI	RGATCY	2 cut(s)	241, 419
RsaI	GTAC	2 cut(s)	106, 464
RsaNI	GTAC	2 cut(s)	105, 463
SaqAI	TTAA	2 cut(s)	32, 528
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	4 cut(s)	23, 241, 304, 419
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	7 cut(s)	73, 155, 216, 295, 440, 468, 513
SfaNI	GCATC	1 cut(s)	484
SmlI	CTYRAG	1 cut(s)	399
SmoI	CTYRAG	1 cut(s)	399
Sse9I	AATT	2 cut(s)	120, 187
SsiI	CCGC	2 cut(s)	385, 457
SspMI	CTAG	2 cut(s)	248, 276
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	104
TasI	AATT	2 cut(s)	120, 187
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	32, 528
Tru9I	TTAA	2 cut(s)	32, 528
TseFI	GTSAC	2 cut(s)	500, 511
Tsp45I	GTSAC	2 cut(s)	500, 511
Van91I	CCANNNNNTGG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	2 cut(s)	39, 135
XspI	CTAG	2 cut(s)	248, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.