Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024773.1

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1262

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024773.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ttcaagacaaacaagaaagagagcttattcgctgatcgtgtatttgacttgtttgacacaaagcacaatggaatactaggttttgaagagtttgctcgcgctctctctgtctttcatcctaacgcccccatcgatgataagattgagttttcttttcaattatacgatctcaagcagcaaggcttcattgaaaggcaggaggtgaagcaaatggtagtggctaccctagcggaatctggcatgaatctttcagacgaggtgatagaaagtataatcgataagacatttgaggaagctgatacaaaacatgatgggaggatcgataaggaagagtggaggagccttgttttgcggcacccatcccttcttaaaaacatgactcttcagtacctcaaagacatcaccacaacattcccaagctttgtatttcactcacaagtcgacgacacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

150

Amino Acids

17.45

Weight (kDa)

4.98

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	230, 352
AclWI	GGATC	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	4, 86, 158, 191
AluBI	AGCT	3 cut(s)	24, 296, 420
AluI	AGCT	3 cut(s)	24, 296, 420
AlwI	GGATC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	214, 271, 394
BanI	GGYRCC	1 cut(s)	354
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	137, 305, 367
BfaI	CTAG	3 cut(s)	77, 227, 451
BisI	GCNGC	2 cut(s)	176, 353
BlsI	GCNGC	2 cut(s)	177, 354
BmiI	GGNNCC	2 cut(s)	341, 356
BpuEI	CTTGAG	1 cut(s)	155
Bsa29I	ATCGAT	3 cut(s)	132, 276, 321
BseCI	ATCGAT	3 cut(s)	132, 276, 321
BseGI	GGATG	2 cut(s)	115, 359
BseRI	GAGGAG	1 cut(s)	352
BseXI	GCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	354
BshVI	ATCGAT	3 cut(s)	132, 276, 321
Bsp143I	GATC	3 cut(s)	34, 166, 318
BspACI	CCGC	2 cut(s)	230, 352
BspDI	ATCGAT	3 cut(s)	132, 276, 321
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	341, 356
BspPI	GGATC	1 cut(s)	326
BspT107I	GGYRCC	1 cut(s)	354
BssMI	GATC	3 cut(s)	34, 166, 318
Bst6I	CTCTTC	3 cut(s)	81, 324, 387
BstC8I	GCNNGC	1 cut(s)	97
BstF5I	GGATG	2 cut(s)	115, 359
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	3 cut(s)	37, 169, 321
BstMBI	GATC	3 cut(s)	34, 166, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	187
Bsu15I	ATCGAT	3 cut(s)	132, 276, 321
BsuTUI	ATCGAT	3 cut(s)	132, 276, 321
BtsCI	GGATG	2 cut(s)	115, 359
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	101
ClaI	ATCGAT	3 cut(s)	132, 276, 321
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	3 cut(s)	241, 308, 376
CviJI	RGCY	6 cut(s)	24, 183, 221, 296, 342, 420
CviKI_1	RGCY	6 cut(s)	24, 183, 221, 296, 342, 420
CviQI	GTAC	1 cut(s)	388
DpnI	GATC	3 cut(s)	36, 168, 320
DpnII	GATC	3 cut(s)	34, 166, 318
Eam1104I	CTCTTC	3 cut(s)	81, 324, 387
EarI	CTCTTC	3 cut(s)	81, 324, 387
Eco57I	CTGAAG	1 cut(s)	368
FaeI	CATG	3 cut(s)	244, 311, 379
FaiI	YATR	5 cut(s)	163, 242, 272, 309, 377
FatI	CATG	3 cut(s)	240, 307, 375
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	2 cut(s)	176, 353
FokI	GGATG	2 cut(s)	102, 346
Fsp4HI	GCNGC	2 cut(s)	176, 353
FspBI	CTAG	3 cut(s)	77, 227, 451
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	2 cut(s)	176, 353
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	244, 311, 379
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	3 cut(s)	233, 244, 379
HphI	GGTGA	3 cut(s)	214, 271, 394
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	1 cut(s)	4
Hpy8I	GTNNAC	1 cut(s)	442
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
Hsp92II	CATG	3 cut(s)	244, 311, 379
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	3 cut(s)	34, 166, 318
LmnI	GCTCC	1 cut(s)	339
LpnPI	CCDG	2 cut(s)	182, 222
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	3 cut(s)	77, 227, 451
MalI	GATC	3 cut(s)	36, 168, 320
MboI	GATC	3 cut(s)	34, 166, 318
MboII	GAAGA	3 cut(s)	98, 341, 374
MluCI	AATT	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	6 cut(s)	193, 250, 283, 309, 330, 401
MseI	TTAA	1 cut(s)	369
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	3 cut(s)	34, 166, 318
NlaIII	CATG	3 cut(s)	244, 311, 379
NlaIV	GGNNCC	2 cut(s)	341, 356
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	233, 244
PkrI	GCNGC	2 cut(s)	177, 354
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	341, 356
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	2 cut(s)	176, 353
Sau3AI	GATC	3 cut(s)	34, 166, 318
SchI	GAGTC	1 cut(s)	373
SetI	ASST	8 cut(s)	26, 82, 204, 261, 298, 393, 422, 452
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	230, 352
SspMI	CTAG	3 cut(s)	77, 227, 451
TaqI	TCGA	4 cut(s)	132, 276, 321, 441
TasI	AATT	1 cut(s)	158
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	2 cut(s)	233, 244
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	104, 175, 257
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	77, 227, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.