Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Reverse (-)

35265130 .. 35273097

Gene Structure 7968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42250.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTGCAGTGCATAGAGGGGTTAAAGCATTTATGTGCTTCCCTACTGAGGTGCTGTGATCTTGACTTGTATAAACAATCGAGAGGATTAGAAGACCCTGAAATTCTAGCTAGGGAGACAGTGTTTAGCGTTAGTGAAATAGAGGCACTTTATGAGTTATTTAAGAAGATTAGCAGTGCAGTGATTGATGACGGGTTGATCAACAAGGAGGAGTTTCAACTGGCATTATTCAAGACAAACAAGAAAGAGAGCTTATTCGCTGATCGTGTATTTGACTTGTTTGACACAAAACACAATGGAATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCTGTCTTTCATCCTAATGCCCCCATCGACGATAAGATTGAGTTTTCGTTTCAATTATACGACCTCAAGCAACAGGGCTTCATTGAAAGGCAGGAGGTGAAGCAAATGGTAGTGGCCACCTTAGCAGAATCTGGCATGAATCTTTCAGACGAGGTGATAGAAAGTATAATCGATAAGACATTTGAGGAAGCTGATACAAAACATGATGGGAGGATCGATAAGGAAGAGTGGAGAAGCCTTGTTTTGCGGCACCCATCCCTTCTTAAAAACATGACTCTTCAGTACCTCAAAGACATCACCACAACATTCCCGAGCTTTGTATTTCACTCACAAGTCGACGACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

227

Amino Acids

26.05

Weight (kDa)

4.82

Isoelectric Point (pI)

49.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	126 - 191	1.2e-09	EF-hand domain pair
EF-hand_5	PF13202	172 - 196	7.1e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	669
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	5 cut(s)	218, 232, 314, 386, 419
AluBI	AGCT	4 cut(s)	110, 252, 524, 648
AluI	AGCT	4 cut(s)	110, 252, 524, 648
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	554
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	102
AsuHPI	GGTGA	3 cut(s)	442, 499, 622
AvaI	CYCGRG	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	582
BauI	CACGAG	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	331
BccI	CCATC	3 cut(s)	365, 533, 595
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	4 cut(s)	107, 111, 305, 679
BisI	GCNGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	582
BmeT110I	CYCGRG	1 cut(s)	643
BmiI	GGNNCC	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	454
BpuEI	CTTGAG	1 cut(s)	383
Bsa29I	ATCGAT	2 cut(s)	504, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	225
BseCI	ATCGAT	2 cut(s)	504, 549
BseGI	GGATG	2 cut(s)	343, 587
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	449
BshNI	GGYRCC	1 cut(s)	582
BshVI	ATCGAT	2 cut(s)	504, 549
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	643
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	449
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	4 cut(s)	58, 198, 262, 546
BspACI	CCGC	1 cut(s)	580
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	2 cut(s)	504, 549
BspLI	GGNNCC	1 cut(s)	584
BspPI	GGATC	1 cut(s)	554
BspT107I	GGYRCC	1 cut(s)	582
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	4 cut(s)	58, 198, 262, 546
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	3 cut(s)	309, 552, 615
BstDEI	CTNAG	2 cut(s)	47, 454
BstF5I	GGATG	2 cut(s)	343, 587
BstKTI	GATC	4 cut(s)	61, 201, 265, 549
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	4 cut(s)	58, 198, 262, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	99
Bsu15I	ATCGAT	2 cut(s)	504, 549
BsuRI	GGCC	1 cut(s)	449
BsuTUI	ATCGAT	2 cut(s)	504, 549
BtsCI	GGATG	2 cut(s)	343, 587
BtsI	GCAGTG	3 cut(s)	14, 181, 186
BtsIMutI	CAGTG	4 cut(s)	14, 126, 181, 186
CaiI	CAGNNNCTG	1 cut(s)	464
ClaI	ATCGAT	2 cut(s)	504, 549
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	3 cut(s)	469, 536, 604
CviJI	RGCY	7 cut(s)	110, 252, 411, 449, 524, 570, 648
CviKI_1	RGCY	7 cut(s)	110, 252, 411, 449, 524, 570, 648
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	2 cut(s)	47, 454
DpnI	GATC	4 cut(s)	60, 200, 264, 548
DpnII	GATC	4 cut(s)	58, 198, 262, 546
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	3 cut(s)	309, 552, 615
EarI	CTCTTC	3 cut(s)	309, 552, 615
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	643
FaeI	CATG	3 cut(s)	472, 539, 607
FaiI	YATR	9 cut(s)	14, 34, 72, 153, 391, 470, 500, 537, 605
FatI	CATG	3 cut(s)	468, 535, 603
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	669
Fnu4HI	GCNGC	1 cut(s)	581
FokI	GGATG	2 cut(s)	330, 574
Fsp4HI	GCNGC	1 cut(s)	581
FspBI	CTAG	4 cut(s)	107, 111, 305, 679
GluI	GCNGC	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	472, 539, 607
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HinfI	GANTC	3 cut(s)	461, 472, 607
HphI	GGTGA	3 cut(s)	442, 499, 622
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	1 cut(s)	481
Hpy188III	TCNNGA	4 cut(s)	62, 81, 232, 643
Hpy8I	GTNNAC	1 cut(s)	670
Hpy99I	CGWCG	2 cut(s)	365, 674
HpyAV	CCTTC	1 cut(s)	602
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	7, 12, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	47, 454
Hsp92II	CATG	3 cut(s)	472, 539, 607
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	4 cut(s)	58, 198, 262, 546
LpnPI	CCDG	5 cut(s)	111, 206, 392, 410, 450
MaeI	CTAG	4 cut(s)	107, 111, 305, 679
MalI	GATC	4 cut(s)	60, 200, 264, 548
MboI	GATC	4 cut(s)	58, 198, 262, 546
MboII	GAAGA	5 cut(s)	104, 178, 326, 569, 602
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	2 cut(s)	102, 386
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	601
Mox20I	TGGCCA	1 cut(s)	449
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	3 cut(s)	23, 162, 597
MslI	CAYNNNNRTG	2 cut(s)	33, 348
Msp20I	TGGCCA	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	4 cut(s)	58, 198, 262, 546
NlaIII	CATG	3 cut(s)	472, 539, 607
NlaIV	GGNNCC	1 cut(s)	584
PfeI	GAWTC	2 cut(s)	461, 472
PkrI	GCNGC	1 cut(s)	582
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	584
PstNI	CAGNNNCTG	1 cut(s)	464
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	2 cut(s)	33, 348
SalI	GTCGAC	1 cut(s)	668
SaqAI	TTAA	3 cut(s)	23, 162, 597
SatI	GCNGC	1 cut(s)	581
Sau3AI	GATC	4 cut(s)	58, 198, 262, 546
SchI	GAGTC	1 cut(s)	601
SduI	GDGCHC	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	33, 348
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	102, 386
SsiI	CCGC	1 cut(s)	580
SspMI	CTAG	4 cut(s)	107, 111, 305, 679
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	5 cut(s)	80, 360, 504, 549, 669
TasI	AATT	2 cut(s)	102, 386
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	461, 472
Tru1I	TTAA	3 cut(s)	23, 162, 597
Tru9I	TTAA	3 cut(s)	23, 162, 597
TscAI	CASTG	4 cut(s)	14, 126, 181, 186
TspDTI	ATGAA	3 cut(s)	332, 403, 485
TspRI	CASTG	4 cut(s)	14, 126, 181, 186
XapI	RAATTY	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	669
XspI	CTAG	4 cut(s)	107, 111, 305, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.