Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8417431.1

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Reverse (-)

264 .. 1385

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8417431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

gtatttgacttgtttgacacaaagcacaatggaatactaggttttgaagagtttgctcgcgctctctctgtctttcatcctaacgcccccatcgatgataagattgagttttcttttcaattatacgatctcaagcagcaaggcttcattgaaaggcaggaggtgaagcaaatggtagtggctaccctagcggaatctggcatgaatctttcagacgaggtgatagaaagtataatcgataagacatttgaggaagctgatacaaaacatgatgggaggatcgataaggaagagtggaggagccttgttttgcggcacccatcccttcttaaaaacatgactcttcagtacctcaaagacatcaccacaacattcccaagctttgtatttcactcacaagtcgacgacacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

137

Amino Acids

15.88

Weight (kDa)

4.75

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	1 cut(s)	60
AciI	CCGC	2 cut(s)	191, 313
AclWI	GGATC	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	47, 119, 152
AluBI	AGCT	2 cut(s)	257, 381
AluI	AGCT	2 cut(s)	257, 381
AlwI	GGATC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	62
AsuHPI	GGTGA	3 cut(s)	175, 232, 355
BanI	GGYRCC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	98, 266, 328
BfaI	CTAG	3 cut(s)	38, 188, 412
BisI	GCNGC	2 cut(s)	137, 314
BlsI	GCNGC	2 cut(s)	138, 315
BmiI	GGNNCC	2 cut(s)	302, 317
BpuEI	CTTGAG	1 cut(s)	116
Bsa29I	ATCGAT	3 cut(s)	93, 237, 282
BseCI	ATCGAT	3 cut(s)	93, 237, 282
BseGI	GGATG	2 cut(s)	76, 320
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	60
BshNI	GGYRCC	1 cut(s)	315
BshVI	ATCGAT	3 cut(s)	93, 237, 282
Bsp143I	GATC	2 cut(s)	127, 279
BspACI	CCGC	2 cut(s)	191, 313
BspDI	ATCGAT	3 cut(s)	93, 237, 282
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	302, 317
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	315
BssMI	GATC	2 cut(s)	127, 279
Bst6I	CTCTTC	3 cut(s)	42, 285, 348
BstC8I	GCNNGC	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	76, 320
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	130, 282
BstMBI	GATC	2 cut(s)	127, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	148
Bsu15I	ATCGAT	3 cut(s)	93, 237, 282
BsuTUI	ATCGAT	3 cut(s)	93, 237, 282
BtsCI	GGATG	2 cut(s)	76, 320
Cac8I	GCNNGC	1 cut(s)	58
CfoI	GCGC	1 cut(s)	62
ClaI	ATCGAT	3 cut(s)	93, 237, 282
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	3 cut(s)	202, 269, 337
CviJI	RGCY	5 cut(s)	144, 182, 257, 303, 381
CviKI_1	RGCY	5 cut(s)	144, 182, 257, 303, 381
CviQI	GTAC	1 cut(s)	349
DpnI	GATC	2 cut(s)	129, 281
DpnII	GATC	2 cut(s)	127, 279
Eam1104I	CTCTTC	3 cut(s)	42, 285, 348
EarI	CTCTTC	3 cut(s)	42, 285, 348
Eco57I	CTGAAG	1 cut(s)	329
FaeI	CATG	3 cut(s)	205, 272, 340
FaiI	YATR	5 cut(s)	124, 203, 233, 270, 338
FatI	CATG	3 cut(s)	201, 268, 336
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	2 cut(s)	137, 314
FokI	GGATG	2 cut(s)	63, 307
Fsp4HI	GCNGC	2 cut(s)	137, 314
FspBI	CTAG	3 cut(s)	38, 188, 412
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	2 cut(s)	137, 314
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	205, 272, 340
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	1 cut(s)	379
HinfI	GANTC	3 cut(s)	194, 205, 340
HphI	GGTGA	3 cut(s)	175, 232, 355
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	205, 272, 340
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	127, 279
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	2 cut(s)	143, 183
Lsp1109I	GCAGC	1 cut(s)	148
MaeI	CTAG	3 cut(s)	38, 188, 412
MalI	GATC	2 cut(s)	129, 281
MboI	GATC	2 cut(s)	127, 279
MboII	GAAGA	3 cut(s)	59, 302, 335
MluCI	AATT	1 cut(s)	119
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	6 cut(s)	154, 211, 244, 270, 291, 362
MseI	TTAA	1 cut(s)	330
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	2 cut(s)	127, 279
NlaIII	CATG	3 cut(s)	205, 272, 340
NlaIV	GGNNCC	2 cut(s)	302, 317
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	194, 205
PkrI	GCNGC	2 cut(s)	138, 315
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	302, 317
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SalI	GTCGAC	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	137, 314
Sau3AI	GATC	2 cut(s)	127, 279
SchI	GAGTC	1 cut(s)	334
SetI	ASST	7 cut(s)	43, 165, 222, 259, 354, 383, 413
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	191, 313
SspMI	CTAG	3 cut(s)	38, 188, 412
TaqI	TCGA	4 cut(s)	93, 237, 282, 402
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	2 cut(s)	194, 205
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	65, 136, 218
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	3 cut(s)	38, 188, 412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.