Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Reverse (-)

80220240 .. 80223359

Gene Structure 3120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G046130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTTGCAGTGCATAGAGGGGTTAAAGCATTTATGTGCTTCCCTACTGAGGTGCTGTGATCTTGACTTGTATAAACAATCAAGAGGATTAGAAGACCCTGAAATTCTAGCTAGAGAGACAGTGTTTAGCGTGAGTGAAATAGAGGCACTTTATGAGTTATTTAAGAAGATCAGCAGTGCAGTGATTGATGACGGATTGATCAACAAGGAGGAGTTTCAATTGGCATTATTCAAGACAAACAAGAAAGAGAGCTTATTCGCTGATCGTGTACGTTTTTCTGTATTTGACTTGTTTGACACAAAGCACAATGGAATACTAGGTTTTGAAGAGTTTGCTCGCGCTCTCTCTGTCTTTCATCCTAACGCCCCCATCGACGATAAGATTGAGTTTTCTTTTCAATTATACGATCTCAAGCAACAAGGCTTCATTGAAAGGCAGGAGGTGAAGCAAATGGTAGTGGCTACCCTAGCGGAATCTGGCATGAATCTTTCAGATGAGGTGATAGAAAGTATAATCGATAAGACATTCGAGGAAGCTGATACAAAACATGATGGGAGGATCGATAAGGAAGAGTGGAGGAGCCTTGTTTTGCGGCACCCATCCCTTCTTAAAAACATGACTCTTCAGTACCTCAAAGACATCACCACAACATTCCCAAGCTTTGTATTTCACTCACAAGTCGACGACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

230

Amino Acids

26.54

Weight (kDa)

4.88

Isoelectric Point (pI)

48.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	126 - 191	1.2e-09	EF-hand domain pair
EF-hand_5	PF13202	172 - 196	7.1e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	594
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	1 cut(s)	339
AciI	CCGC	2 cut(s)	470, 592
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	608
AfaI	GTAC	2 cut(s)	270, 629
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	5 cut(s)	218, 232, 326, 398, 431
AluBI	AGCT	4 cut(s)	110, 252, 536, 660
AluI	AGCT	4 cut(s)	110, 252, 536, 660
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	102
AspLEI	GCGC	1 cut(s)	341
AsuHPI	GGTGA	3 cut(s)	454, 511, 634
BanI	GGYRCC	1 cut(s)	594
BbsI	GAAGAC	1 cut(s)	99
BccI	CCATC	3 cut(s)	377, 545, 607
BclI	TGATCA	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	5 cut(s)	107, 111, 317, 467, 691
BisI	GCNGC	1 cut(s)	593
BlsI	GCNGC	1 cut(s)	594
BmiI	GGNNCC	2 cut(s)	581, 596
BpiI	GAAGAC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	395
Bsa29I	ATCGAT	2 cut(s)	516, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseCI	ATCGAT	2 cut(s)	516, 561
BseGI	GGATG	2 cut(s)	355, 599
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	2 cut(s)	224, 592
BsgI	GTGCAG	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	339
BshNI	GGYRCC	1 cut(s)	594
BshVI	ATCGAT	2 cut(s)	516, 561
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	110
Bsp143I	GATC	6 cut(s)	58, 168, 198, 262, 406, 558
BspACI	CCGC	2 cut(s)	470, 592
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	2 cut(s)	516, 561
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	581, 596
BspPI	GGATC	1 cut(s)	566
BspT107I	GGYRCC	1 cut(s)	594
BssMI	GATC	6 cut(s)	58, 168, 198, 262, 406, 558
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	3 cut(s)	321, 564, 627
BstC8I	GCNNGC	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	355, 599
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	6 cut(s)	61, 171, 201, 265, 409, 561
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	6 cut(s)	58, 168, 198, 262, 406, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstUI	CGCG	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	99
Bsu15I	ATCGAT	2 cut(s)	516, 561
BsuTUI	ATCGAT	2 cut(s)	516, 561
BtsCI	GGATG	2 cut(s)	355, 599
BtsI	GCAGTG	3 cut(s)	14, 181, 186
BtsIMutI	CAGTG	4 cut(s)	14, 126, 181, 186
Cac8I	GCNNGC	1 cut(s)	337
CfoI	GCGC	1 cut(s)	341
ClaI	ATCGAT	2 cut(s)	516, 561
Csp6I	GTAC	2 cut(s)	269, 628
CviAII	CATG	3 cut(s)	481, 548, 616
CviJI	RGCY	7 cut(s)	110, 252, 423, 461, 536, 582, 660
CviKI_1	RGCY	7 cut(s)	110, 252, 423, 461, 536, 582, 660
CviQI	GTAC	2 cut(s)	269, 628
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	6 cut(s)	60, 170, 200, 264, 408, 560
DpnII	GATC	6 cut(s)	58, 168, 198, 262, 406, 558
Eam1104I	CTCTTC	3 cut(s)	321, 564, 627
EarI	CTCTTC	3 cut(s)	321, 564, 627
Eco57I	CTGAAG	1 cut(s)	608
FaeI	CATG	3 cut(s)	484, 551, 619
FaiI	YATR	9 cut(s)	14, 34, 72, 153, 403, 482, 512, 549, 617
FatI	CATG	3 cut(s)	480, 547, 615
FbaI	TGATCA	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	1 cut(s)	593
FokI	GGATG	2 cut(s)	342, 586
Fsp4HI	GCNGC	1 cut(s)	593
FspBI	CTAG	5 cut(s)	107, 111, 317, 467, 691
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	1 cut(s)	593
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	484, 551, 619
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	3 cut(s)	473, 484, 619
HphI	GGTGA	3 cut(s)	454, 511, 634
Hpy166II	GTNNAC	2 cut(s)	269, 682
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	3 cut(s)	62, 81, 232
Hpy8I	GTNNAC	2 cut(s)	269, 682
Hpy99I	CGWCG	2 cut(s)	377, 686
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	7, 12, 179
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	484, 551, 619
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	6 cut(s)	58, 168, 198, 262, 406, 558
LmnI	GCTCC	1 cut(s)	579
LpnPI	CCDG	3 cut(s)	111, 422, 462
MaeI	CTAG	5 cut(s)	107, 111, 317, 467, 691
MaeII	ACGT	1 cut(s)	271
MalI	GATC	6 cut(s)	60, 170, 200, 264, 408, 560
MboI	GATC	6 cut(s)	58, 168, 198, 262, 406, 558
MboII	GAAGA	5 cut(s)	104, 178, 338, 581, 614
MfeI	CAATTG	1 cut(s)	218
MluCI	AATT	3 cut(s)	102, 218, 398
MlyI	GAGTC	1 cut(s)	613
MseI	TTAA	3 cut(s)	23, 162, 609
MslI	CAYNNNNRTG	1 cut(s)	33
MunI	CAATTG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	6 cut(s)	58, 168, 198, 262, 406, 558
NlaIII	CATG	3 cut(s)	484, 551, 619
NlaIV	GGNNCC	2 cut(s)	581, 596
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	473, 484
PkrI	GCNGC	1 cut(s)	594
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PspN4I	GGNNCC	2 cut(s)	581, 596
RsaI	GTAC	2 cut(s)	270, 629
RsaNI	GTAC	2 cut(s)	269, 628
RseI	CAYNNNNRTG	1 cut(s)	33
SalI	GTCGAC	1 cut(s)	680
SaqAI	TTAA	3 cut(s)	23, 162, 609
SatI	GCNGC	1 cut(s)	593
Sau3AI	GATC	6 cut(s)	58, 168, 198, 262, 406, 558
SchI	GAGTC	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	102, 218, 398
SsiI	CCGC	2 cut(s)	470, 592
SspMI	CTAG	5 cut(s)	107, 111, 317, 467, 691
TaaI	ACNGT	1 cut(s)	121
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	5 cut(s)	372, 516, 528, 561, 681
TasI	AATT	3 cut(s)	102, 218, 398
TauI	GCSGC	1 cut(s)	595
TfiI	GAWTC	2 cut(s)	473, 484
Tru1I	TTAA	3 cut(s)	23, 162, 609
Tru9I	TTAA	3 cut(s)	23, 162, 609
TscAI	CASTG	4 cut(s)	14, 126, 181, 186
TspDTI	ATGAA	3 cut(s)	344, 415, 497
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	4 cut(s)	14, 126, 181, 186
XapI	RAATTY	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	681
XspI	CTAG	5 cut(s)	107, 111, 317, 467, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.