Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Forward (+)

22671113 .. 22674100

Gene Structure 2988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G55990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCGCAGTGCGTTGACGGTATCAAGCATTTATGCACCTCTGTTTTAGGGTGTTTTGATCTTGATTTGTATAAACAATCTGGTGGCCTTGGAGATCCTGAATTGCTTGCAAGAGACACTGTTTTTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTTTTTAAGAAAATCAGCAGTGCCGTGATTGATGATGGGCTAATAAACAAGGAAGAGTTTCAGTTGGCTTTGTTTAAGACAAATAAAAAAGAGAGTTTGTTTGCAGATCGGGTTTTCGATTTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACAAAATTCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTTATCGAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCTGGAATGAATTTGAAGGATACTGTCATTGAGGATATAATCGACAAGACGTTTGAGGAAGCAGACACAAAACACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCCCAGCCTTCTGAAGAACATGACTCTTCAATATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTGTTCCATTCTCAGGTTGAAGATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0007154 GO:0007165 GO:0008150 GO:0009705 GO:0009987 GO:0016020 GO:0019722 GO:0019932 GO:0022626 GO:0023052 GO:0031090 GO:0032991 GO:0035556 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051716 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0098588 GO:0098771 GO:0098805 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

226

Amino Acids

25.81

Weight (kDa)

4.89

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	122 - 187	6.1e-09	EF-hand domain pair
EF-hand_1	PF00036	168 - 192	4.3e-06	EF hand domain
EF-hand_5	PF13202	168 - 192	4e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	317, 369, 472
AcuI	CTGAAG	1 cut(s)	617
AfiI	CCNNNNNNNGG	1 cut(s)	664
AgsI	TTSAA	3 cut(s)	478, 614, 671
AluBI	AGCT	4 cut(s)	146, 157, 388, 648
AluI	AGCT	4 cut(s)	146, 157, 388, 648
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	85
ApoI	RAATTY	3 cut(s)	317, 369, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	335, 442
BauI	CACGAG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	331
BccI	CCATC	2 cut(s)	185, 533
BceAI	ACGGC	2 cut(s)	164, 437
BciVI	GTATCC	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	475
BmrI	ACTGGG	1 cut(s)	314
BmuI	ACTGGG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse1I	ACTGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	58, 94, 262, 394, 546
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	676
BspDI	ATCGAT	1 cut(s)	549
BspPI	GGATC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	5 cut(s)	58, 94, 262, 394, 546
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	3 cut(s)	20, 121, 487
Bst6I	CTCTTC	3 cut(s)	204, 552, 615
BstC8I	GCNNGC	2 cut(s)	108, 456
BstDEI	CTNAG	2 cut(s)	578, 663
BstF5I	GGATG	1 cut(s)	583
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	5 cut(s)	61, 97, 265, 397, 549
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	5 cut(s)	58, 94, 262, 394, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
Bsu15I	ATCGAT	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	549
BtsCI	GGATG	1 cut(s)	583
BtsI	GCAGTG	2 cut(s)	14, 181
BtsIMutI	CAGTG	3 cut(s)	14, 117, 181
Cac8I	GCNNGC	2 cut(s)	108, 456
CfoI	GCGC	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	549
CviAII	CATG	1 cut(s)	604
CviJI	RGCY	9 cut(s)	87, 146, 157, 196, 224, 388, 570, 591, 648
CviKI_1	RGCY	9 cut(s)	87, 146, 157, 196, 224, 388, 570, 591, 648
DdeI	CTNAG	2 cut(s)	578, 663
DpnI	GATC	5 cut(s)	60, 96, 264, 396, 548
DpnII	GATC	5 cut(s)	58, 94, 262, 394, 546
Eam1104I	CTCTTC	3 cut(s)	204, 552, 615
EarI	CTCTTC	3 cut(s)	204, 552, 615
Eco130I	CCWWGG	1 cut(s)	88
Eco32I	GATATC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	617
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	607
FaiI	YATR	8 cut(s)	34, 72, 153, 359, 391, 393, 500, 605
FatI	CATG	1 cut(s)	603
FokI	GGATG	1 cut(s)	570
GlaI	GCGC	1 cut(s)	354
GsaI	CCCAGC	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	2 cut(s)	461, 607
HphI	GGTGA	2 cut(s)	335, 442
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	597
Hpy188III	TCNNGA	4 cut(s)	62, 98, 465, 631
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	472, 602
HpyCH4III	ACNGT	3 cut(s)	20, 121, 487
HpyCH4IV	ACGT	2 cut(s)	512, 638
HpyCH4V	TGCA	3 cut(s)	36, 110, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	578, 663
HpySE526I	ACGT	2 cut(s)	512, 638
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	5 cut(s)	58, 94, 262, 394, 546
LpnPI	CCDG	6 cut(s)	66, 111, 290, 450, 601, 650
MaeII	ACGT	2 cut(s)	512, 638
MalI	GATC	5 cut(s)	60, 96, 264, 396, 548
MboI	GATC	5 cut(s)	58, 94, 262, 394, 546
MboII	GAAGA	4 cut(s)	221, 569, 602, 610
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	101, 317, 369, 472
MlyI	GAGTC	1 cut(s)	601
MnlI	CCTC	5 cut(s)	49, 307, 421, 487, 511
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	3 cut(s)	162, 231, 399
MslI	CAYNNNNRTG	1 cut(s)	348
MwoI	GCNNNNNNNGC	1 cut(s)	455
NdeII	GATC	5 cut(s)	58, 94, 262, 394, 546
NlaIII	CATG	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	461
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	587
PsuI	RGATCY	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	162, 231, 399
Sau3AI	GATC	5 cut(s)	58, 94, 262, 394, 546
SchI	GAGTC	1 cut(s)	601
SduI	GDGCHC	1 cut(s)	331
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	4 cut(s)	101, 317, 369, 472
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	3 cut(s)	20, 121, 487
TaiI	ACGT	2 cut(s)	515, 641
TaqI	TCGA	4 cut(s)	273, 417, 504, 549
TasI	AATT	4 cut(s)	101, 317, 369, 472
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	3 cut(s)	162, 231, 399
Tru9I	TTAA	3 cut(s)	162, 231, 399
TscAI	CASTG	3 cut(s)	14, 124, 181
TspDTI	ATGAA	2 cut(s)	369, 485
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	3 cut(s)	14, 124, 181
XapI	RAATTY	3 cut(s)	317, 369, 472
XmnI	GAANNNNTTC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.